RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 C6orf48Q9UBA6 75 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 ASPMQ8IZT6 3477 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 ATRQ13535 2644 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 NF1P21359 2839 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 CSPG4Q6UVK1 2322 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 PLXNC1O60486 1568 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 GLI2P10070 1586 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 ITPR2Q14571 2701 aa0.36□□□□□ -2.35
VPS13A-211ENST00000484581 C4AP0C0L4 1744 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 C4BP0C0L5 1744 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 PARP4Q9UKK3 1724 aaKnown RBP0.35□□□□□ -2.35
VPS13A-211ENST00000484581 SPG11Q96JI7 2443 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 KIAA0586Q9BVV6 1533 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 GOLGB1Q14789 3259 aaKnown RBP0.35□□□□□ -2.35
VPS13A-211ENST00000484581 DEFB106AQ8N104 65 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 HUWE1Q7Z6Z7 4374 aaKnown RBP0.35□□□□□ -2.35
VPS13A-211ENST00000484581 ABCA13Q86UQ4 5058 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 TGP01266 2768 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 ITPR1Q14643 2758 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 THOC2Q8NI27 1593 aaKnown RBP0.35□□□□□ -2.35
VPS13A-211ENST00000484581 BIRC6Q9NR09 4857 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 BSNQ9UPA5 3926 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 STAB2Q8WWQ8 2551 aa0.35□□□□□ -2.35
VPS13A-211ENST00000484581 MAP1BP46821 2468 aaKnown RBP0.35□□□□□ -2.35
VPS13A-211ENST00000484581 RELNP78509 3460 aa0.34□□□□□ -2.35
VPS13A-211ENST00000484581 KMT2DO14686 5537 aa0.34□□□□□ -2.35
VPS13A-211ENST00000484581 MTORP42345 2549 aa0.34□□□□□ -2.35
VPS13A-211ENST00000484581 BRCA2P51587 3418 aa0.34□□□□□ -2.35
VPS13A-211ENST00000484581 SSPOA2VEC9 5147 aa0.34□□□□□ -2.35
VPS13A-211ENST00000484581 HYDINQ4G0P3 5121 aa0.34□□□□□ -2.35
VPS13A-211ENST00000484581 LYNX1G3V0Z9 82 aa0.34□□□□□ -2.36
VPS13A-211ENST00000484581 TIMM8BQ9Y5J9 83 aaPredicted RBP0.34□□□□□ -2.36
VPS13A-211ENST00000484581 TLN2Q9Y4G6 2542 aa0.34□□□□□ -2.36
VPS13A-211ENST00000484581 DEPDC5O75140 1603 aa0.34□□□□□ -2.36
VPS13A-211ENST00000484581 PRRC2CQ9Y520 2896 aaKnown RBP0.34□□□□□ -2.36
VPS13A-211ENST00000484581 DSPP15924 2871 aaKnown RBP0.33□□□□□ -2.36
VPS13A-211ENST00000484581 HTTP42858 3142 aa0.33□□□□□ -2.36
VPS13A-211ENST00000484581 PRM1P04553 51 aa0.33□□□□□ -2.36
VPS13A-211ENST00000484581 SPTAN1Q13813 2472 aaKnown RBP0.33□□□□□ -2.36
VPS13A-211ENST00000484581 EP300Q09472 2414 aaPredicted RBP0.33□□□□□ -2.36
VPS13A-211ENST00000484581 VPS13AQ96RL7 3174 aa0.33□□□□□ -2.36
VPS13A-211ENST00000484581 SPTBN5Q9NRC6 3674 aaKnown RBP0.32□□□□□ -2.36
VPS13A-211ENST00000484581 DMXL2Q8TDJ6 3036 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 IGIPA6NJ69 53 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 PLNP26678 52 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 PRLHP81277 87 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 ABRACLQ9P1F3 81 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 C3P01024 1663 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 LAMA1P25391 3075 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 PDE4DIPQ5VU43 2346 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 CNOT1A5YKK6 2376 aaKnown RBP0.32□□□□□ -2.36
VPS13A-211ENST00000484581 CEP250Q9BV73 2442 aa0.32□□□□□ -2.36
VPS13A-211ENST00000484581 RNF17Q9BXT8 1623 aaKnown RBP0.31□□□□□ -2.36
VPS13A-211ENST00000484581 ALS2Q96Q42 1657 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 WDR87Q6ZQQ6 2873 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 RPS27P42677 84 aaKnown RBP0.31□□□□□ -2.36
VPS13A-211ENST00000484581 RPS27LQ71UM5 84 aaKnown RBP0.31□□□□□ -2.36
VPS13A-211ENST00000484581 LINC00308Q8TCZ7 52 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 TMEM167BQ9NRX6 74 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 CDH23Q9H251 3354 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 CEP290O15078 2479 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 USP34Q70CQ2 3546 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 PCNX1Q96RV3 2341 aa0.31□□□□□ -2.36
VPS13A-211ENST00000484581 NIPBLQ6KC79 2804 aaeCLIP0.3□□□□□ -2.36
VPS13A-211ENST00000484581 SYCP2Q9BX26 1530 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 S4R3F8 94 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 DMXL1Q9Y485 3027 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 MGAM2Q2M2H8 2515 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 FREM2Q5SZK8 3169 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 ITSN2Q9NZM3 1697 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 HERC2O95714 4834 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 TJP1Q07157 1748 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 RNF213Q63HN8 5207 aa0.3□□□□□ -2.36
VPS13A-211ENST00000484581 MYCBP2O75592 4640 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 DMBT1Q9UGM3 2413 aaPredicted RBP0.29□□□□□ -2.36
VPS13A-211ENST00000484581 ADGRG4Q8IZF6 3080 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 MAP1AP78559 2803 aaPredicted RBP0.29□□□□□ -2.36
VPS13A-211ENST00000484581 EFCAB6Q5THR3 1501 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 DCHS2Q6V1P9 2916 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 FAT2Q9NYQ8 4349 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 MGAQ8IWI9 3026 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 PREX2Q70Z35 1606 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 H0YGX0 51 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 WT1-ASQ06250 92 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 HMCN2Q8NDA2 5059 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 FRYLO94915 3013 aa0.29□□□□□ -2.36
VPS13A-211ENST00000484581 CLASP1Q7Z460 1538 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 SPTA1P02549 2419 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 ACANP16112 2415 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 NBPF19A0A087WUL8 3843 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 UTRNP46939 3433 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 PRUNE2Q8WUY3 3088 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 WFDC10BQ8IUB3 73 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 CMC2Q9NRP2 79 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 KAAG1Q9UBP8 84 aa0.28□□□□□ -2.36
VPS13A-211ENST00000484581 FANCD2Q9BXW9 1451 aa0.28□□□□□ -2.37
VPS13A-211ENST00000484581 XIRP2A4UGR9 3374 aa0.28□□□□□ -2.37
VPS13A-211ENST00000484581 MYO15AQ9UKN7 3530 aa0.27□□□□□ -2.37
VPS13A-211ENST00000484581 FRYQ5TBA9 3013 aa0.27□□□□□ -2.37
VPS13A-211ENST00000484581 CSMD2Q7Z408 3487 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms