RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 SMIM20Q8N5G0 67 aa6.82□□□□□ -1.32
USP54-209ENST00000464635 A8MWP4 228 aa6.81□□□□□ -1.32
USP54-209ENST00000464635 PCP4P48539 62 aa6.81□□□□□ -1.32
USP54-209ENST00000464635 TYMSOSQ8TAI1 123 aa6.81□□□□□ -1.32
USP54-209ENST00000464635 Q96NJ1 140 aa6.81□□□□□ -1.32
USP54-209ENST00000464635 LIMD2Q9BT23 127 aa6.81□□□□□ -1.32
USP54-209ENST00000464635 NDUFB1O75438 58 aa6.8□□□□□ -1.32
USP54-209ENST00000464635 C4orf48Q5BLP8 95 aa6.79□□□□□ -1.32
USP54-209ENST00000464635 PRR15Q8IV56 129 aa6.79□□□□□ -1.32
USP54-209ENST00000464635 A0A087WVE0 104 aa6.78□□□□□ -1.32
USP54-209ENST00000464635 ANAPC13Q9BS18 74 aa6.76□□□□□ -1.33
USP54-209ENST00000464635 K7EQZ3 153 aa6.75□□□□□ -1.33
USP54-209ENST00000464635 HRCT1Q6UXD1 115 aa6.75□□□□□ -1.33
USP54-209ENST00000464635 LINC00304Q8N9R0 145 aa6.74□□□□□ -1.33
USP54-209ENST00000464635 HCG22E2RYF7 251 aa6.73□□□□□ -1.33
USP54-209ENST00000464635 SERP2Q8N6R1 65 aa6.73□□□□□ -1.33
USP54-209ENST00000464635 TRAV7A0A075B6U4 112 aa6.71□□□□□ -1.34
USP54-209ENST00000464635 A0A1B0GVX0 72 aa6.71□□□□□ -1.34
USP54-209ENST00000464635 UQCRQO14949 82 aa6.71□□□□□ -1.34
USP54-209ENST00000464635 PRR4Q16378 134 aa6.71□□□□□ -1.34
USP54-209ENST00000464635 Q8N9L7 120 aa6.71□□□□□ -1.34
USP54-209ENST00000464635 C8orf87E5RJ46 101 aa6.7□□□□□ -1.34
USP54-209ENST00000464635 COX7CP15954 63 aa6.7□□□□□ -1.34
USP54-209ENST00000464635 DEFB116Q30KQ4 102 aa6.7□□□□□ -1.34
USP54-209ENST00000464635 C1orf195Q5TG92 126 aa6.7□□□□□ -1.34
USP54-209ENST00000464635 OCR1Q9BZK8 76 aa6.68□□□□□ -1.34
USP54-209ENST00000464635 LCE2DQ5TA82 110 aaPredicted RBP6.67□□□□□ -1.34
USP54-209ENST00000464635 MMP24-AS1A0A0U1RRL7 71 aa6.66□□□□□ -1.34
USP54-209ENST00000464635 CASC2Q6XLA1 102 aa6.66□□□□□ -1.34
USP54-209ENST00000464635 C8orf17Q9NRJ1 99 aa6.66□□□□□ -1.34
USP54-209ENST00000464635 hDV103S1A0JD37 113 aa6.65□□□□□ -1.34
USP54-209ENST00000464635 TMEM254Q8TBM7 123 aa6.64□□□□□ -1.35
USP54-209ENST00000464635 TP53AIP1Q9HCN2 124 aa6.64□□□□□ -1.35
USP54-209ENST00000464635 C5orf47Q569G3 176 aa6.63□□□□□ -1.35
USP54-209ENST00000464635 RETNLBQ9BQ08 111 aa6.62□□□□□ -1.35
USP54-209ENST00000464635 IGHV6-1A0A0B4J1U7 121 aa6.61□□□□□ -1.35
USP54-209ENST00000464635 LINC00313P59037 77 aa6.61□□□□□ -1.35
USP54-209ENST00000464635 MRPL34Q9BQ48 92 aaKnown RBP6.61□□□□□ -1.35
USP54-209ENST00000464635 H3BPC8 53 aa6.59□□□□□ -1.35
USP54-209ENST00000464635 KLKP1Q107X0 134 aa6.59□□□□□ -1.35
USP54-209ENST00000464635 WFDC13Q8IUB5 93 aa6.59□□□□□ -1.35
USP54-209ENST00000464635 MUC2Q02817 5179 aa6.58□□□□□ -1.36
USP54-209ENST00000464635 CCDC179H3BU77 68 aa6.57□□□□□ -1.36
USP54-209ENST00000464635 FP248Q71RG6 208 aaPredicted RBP6.57□□□□□ -1.36
USP54-209ENST00000464635 Q8N9P0 234 aaPredicted RBP6.57□□□□□ -1.36
USP54-209ENST00000464635 NDUFC1O43677 76 aa6.56□□□□□ -1.36
USP54-209ENST00000464635 MP68P56378 58 aa6.53□□□□□ -1.36
USP54-209ENST00000464635 NOTCH2NLQ7Z3S9 236 aa6.53□□□□□ -1.36
USP54-209ENST00000464635 A0A0U1RQV1 116 aa6.52□□□□□ -1.37
USP54-209ENST00000464635 KRTAP16-1A8MUX0 517 aa6.52□□□□□ -1.37
USP54-209ENST00000464635 C20orf197Q8N268 126 aa6.51□□□□□ -1.37
USP54-209ENST00000464635 IGLV7-46A0A075B6I9 117 aa6.5□□□□□ -1.37
USP54-209ENST00000464635 TRAV22A0A0B4J277 110 aa6.5□□□□□ -1.37
USP54-209ENST00000464635 TPRXLQ17RH7 258 aa6.5□□□□□ -1.37
USP54-209ENST00000464635 ZCCHC13Q8WW36 166 aaKnown RBP6.5□□□□□ -1.37
USP54-209ENST00000464635 MUC17Q685J3 4493 aa6.49□□□□□ -1.37
USP54-209ENST00000464635 FAT4Q6V0I7 4981 aa6.46□□□□□ -1.37
USP54-209ENST00000464635 H0Y9P7 68 aa6.45□□□□□ -1.38
USP54-209ENST00000464635 NDUFS5O43920 106 aa6.45□□□□□ -1.38
USP54-209ENST00000464635 TMEM258P61165 79 aa6.45□□□□□ -1.38
USP54-209ENST00000464635 C20orf166-AS1Q96NR2 134 aa6.45□□□□□ -1.38
USP54-209ENST00000464635 A8MUU9 505 aa6.44□□□□□ -1.38
USP54-209ENST00000464635 H7BZZ5 65 aa6.44□□□□□ -1.38
USP54-209ENST00000464635 KRTAP13-3Q3SY46 172 aa6.44□□□□□ -1.38
USP54-209ENST00000464635 KRTAP3-3Q9BYR6 98 aa6.44□□□□□ -1.38
USP54-209ENST00000464635 KRTAP3-2Q9BYR7 98 aa6.44□□□□□ -1.38
USP54-209ENST00000464635 LCE2AQ5TA79 106 aaPredicted RBP6.43□□□□□ -1.38
USP54-209ENST00000464635 LOC101927531A0A1B0GV80 90 aa6.42□□□□□ -1.38
USP54-209ENST00000464635 ATP5EP56381 51 aaPredicted RBP6.42□□□□□ -1.38
USP54-209ENST00000464635 C1orf64Q8NEQ6 169 aa6.41□□□□□ -1.38
USP54-209ENST00000464635 LINC00208Q96KT6 92 aa6.41□□□□□ -1.38
USP54-209ENST00000464635 SNURFQ9Y675 71 aa6.41□□□□□ -1.38
USP54-209ENST00000464635 Q75L30 129 aa6.4□□□□□ -1.38
USP54-209ENST00000464635 SPANXA2-OT1Q8N9U9 137 aa6.39□□□□□ -1.39
USP54-209ENST00000464635 CYSTM1Q9H1C7 97 aa6.39□□□□□ -1.39
USP54-209ENST00000464635 Q5W150 140 aa6.38□□□□□ -1.39
USP54-209ENST00000464635 KRTAP9-2Q9BYQ4 174 aa6.35□□□□□ -1.39
USP54-209ENST00000464635 KRTAP4-1Q9BYQ7 146 aa6.35□□□□□ -1.39
USP54-209ENST00000464635 CYP4F30PQ9H0H9 118 aa6.34□□□□□ -1.39
USP54-209ENST00000464635 IGKV2-30P06310 120 aa6.33□□□□□ -1.4
USP54-209ENST00000464635 RPS28P62857 69 aaKnown RBP6.33□□□□□ -1.4
USP54-209ENST00000464635 FAM236DA0A1B0GTK5 79 aa6.32□□□□□ -1.4
USP54-209ENST00000464635 C9orf92A6NGG3 77 aa6.32□□□□□ -1.4
USP54-209ENST00000464635 FAM236CP0DP71 79 aa6.32□□□□□ -1.4
USP54-209ENST00000464635 RPL37P61927 97 aaKnown RBP6.29□□□□□ -1.4
USP54-209ENST00000464635 XP32Q5T750 250 aa6.29□□□□□ -1.4
USP54-209ENST00000464635 SEC61BP60468 96 aaKnown RBP6.27□□□□□ -1.41
USP54-209ENST00000464635 C7orf65Q6ZTY9 151 aa6.27□□□□□ -1.41
USP54-209ENST00000464635 ATP11AUNQ6ZP68 121 aa6.26□□□□□ -1.41
USP54-209ENST00000464635 SERP1Q9Y6X1 66 aa6.24□□□□□ -1.41
USP54-209ENST00000464635 PCOTHQ58A44 107 aa6.2□□□□□ -1.42
USP54-209ENST00000464635 HRES1P13985 223 aa6.19□□□□□ -1.42
USP54-209ENST00000464635 IGKV2D-30A0A075B6S6 120 aa6.18□□□□□ -1.42
USP54-209ENST00000464635 A8MUN3 132 aa6.18□□□□□ -1.42
USP54-209ENST00000464635 LCE2CQ5TA81 110 aa6.18□□□□□ -1.42
USP54-209ENST00000464635 SPINK7P58062 85 aa6.17□□□□□ -1.42
USP54-209ENST00000464635 KRTAP19-2Q3LHN2 52 aa6.17□□□□□ -1.42
USP54-209ENST00000464635 DMAC1Q96GE9 116 aa6.17□□□□□ -1.42
USP54-209ENST00000464635 KRTAP9-6A0A140TA67 174 aa6.16□□□□□ -1.42
USP54-209ENST00000464635 ACYP2P14621 99 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms