RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 A0A1B0GVX0 72 aa10.67□□□□□ -0.7
COL9A3-204ENST00000463487 DSCR10P59022 87 aa10.67□□□□□ -0.7
COL9A3-204ENST00000463487 Q75L30 129 aa10.67□□□□□ -0.7
COL9A3-204ENST00000463487 C8orf87E5RJ46 101 aa10.66□□□□□ -0.7
COL9A3-204ENST00000463487 PCOTHQ58A44 107 aa10.65□□□□□ -0.7
COL9A3-204ENST00000463487 ATP11AUNQ6ZP68 121 aa10.63□□□□□ -0.71
COL9A3-204ENST00000463487 A8MWP4 228 aa10.62□□□□□ -0.71
COL9A3-204ENST00000463487 MUC17Q685J3 4493 aa10.61□□□□□ -0.71
COL9A3-204ENST00000463487 ETDBQ3ZM63 59 aa10.61□□□□□ -0.71
COL9A3-204ENST00000463487 C20orf166-AS1Q96NR2 134 aa10.61□□□□□ -0.71
COL9A3-204ENST00000463487 UBL5Q9BZL1 73 aa10.58□□□□□ -0.72
COL9A3-204ENST00000463487 A8MUU9 505 aa10.57□□□□□ -0.72
COL9A3-204ENST00000463487 BPY2O14599 106 aa10.57□□□□□ -0.72
COL9A3-204ENST00000463487 Q6ZVQ6 151 aa10.56□□□□□ -0.72
COL9A3-204ENST00000463487 MUC2Q02817 5179 aa10.53□□□□□ -0.72
COL9A3-204ENST00000463487 IGKV3D-7A0A0C4DH55 119 aa10.53□□□□□ -0.72
COL9A3-204ENST00000463487 KRTAP16-1A8MUX0 517 aa10.53□□□□□ -0.72
COL9A3-204ENST00000463487 NOTCH2NLQ7Z3S9 236 aa10.53□□□□□ -0.72
COL9A3-204ENST00000463487 PRR15Q8IV56 129 aa10.53□□□□□ -0.72
COL9A3-204ENST00000463487 A0A1B0GV90 55 aa10.52□□□□□ -0.73
COL9A3-204ENST00000463487 LINC00846Q9NV44 126 aa10.52□□□□□ -0.73
COL9A3-204ENST00000463487 C8orf17Q9NRJ1 99 aa10.51□□□□□ -0.73
COL9A3-204ENST00000463487 KRTAP4-1Q9BYQ7 146 aa10.49□□□□□ -0.73
COL9A3-204ENST00000463487 K7EQZ3 153 aa10.46□□□□□ -0.73
COL9A3-204ENST00000463487 ACYP1P07311 99 aa10.44□□□□□ -0.74
COL9A3-204ENST00000463487 MMP24-AS1A0A0U1RRL7 71 aa10.4□□□□□ -0.74
COL9A3-204ENST00000463487 Q8N9P0 234 aaPredicted RBP10.4□□□□□ -0.74
COL9A3-204ENST00000463487 TMEM254Q8TBM7 123 aa10.4□□□□□ -0.74
COL9A3-204ENST00000463487 FAM240AA0A1B0GVK7 77 aa10.39□□□□□ -0.75
COL9A3-204ENST00000463487 hDV103S1A0JD37 113 aa10.39□□□□□ -0.75
COL9A3-204ENST00000463487 MRPL34Q9BQ48 92 aaKnown RBP10.38□□□□□ -0.75
COL9A3-204ENST00000463487 CXCL6P80162 114 aa10.36□□□□□ -0.75
COL9A3-204ENST00000463487 Q8N9L7 120 aa10.36□□□□□ -0.75
COL9A3-204ENST00000463487 ZCCHC13Q8WW36 166 aaKnown RBP10.34□□□□□ -0.75
COL9A3-204ENST00000463487 NDUFS5O43920 106 aa10.32□□□□□ -0.76
COL9A3-204ENST00000463487 CASC2Q6XLA1 102 aa10.32□□□□□ -0.76
COL9A3-204ENST00000463487 WFDC13Q8IUB5 93 aa10.29□□□□□ -0.76
COL9A3-204ENST00000463487 J3QR89 54 aa10.28□□□□□ -0.76
COL9A3-204ENST00000463487 ATP5EP2Q5VTU8 51 aa10.28□□□□□ -0.76
COL9A3-204ENST00000463487 HCG22E2RYF7 251 aa10.27□□□□□ -0.77
COL9A3-204ENST00000463487 COX6B2Q6YFQ2 88 aa10.27□□□□□ -0.77
COL9A3-204ENST00000463487 FAT4Q6V0I7 4981 aa10.22□□□□□ -0.77
COL9A3-204ENST00000463487 KRTAP19-2Q3LHN2 52 aa10.18□□□□□ -0.78
COL9A3-204ENST00000463487 LCE2AQ5TA79 106 aaPredicted RBP10.18□□□□□ -0.78
COL9A3-204ENST00000463487 LINC00643Q86TS7 51 aa10.18□□□□□ -0.78
COL9A3-204ENST00000463487 SPINK7P58062 85 aa10.16□□□□□ -0.78
COL9A3-204ENST00000463487 RBM12B-AS1Q9P1G2 102 aa10.16□□□□□ -0.78
COL9A3-204ENST00000463487 LCE2CQ5TA81 110 aa10.15□□□□□ -0.78
COL9A3-204ENST00000463487 HIST1H4AP62805 103 aaKnown RBP10.13□□□□□ -0.79
COL9A3-204ENST00000463487 FAM236DA0A1B0GTK5 79 aa10.11□□□□□ -0.79
COL9A3-204ENST00000463487 FAM236CP0DP71 79 aa10.11□□□□□ -0.79
COL9A3-204ENST00000463487 TP53AIP1Q9HCN2 124 aa10.11□□□□□ -0.79
COL9A3-204ENST00000463487 HRES1P13985 223 aa10.08□□□□□ -0.8
COL9A3-204ENST00000463487 MT1HP80294 61 aa10.05□□□□□ -0.8
COL9A3-204ENST00000463487 C7orf65Q6ZTY9 151 aa10.05□□□□□ -0.8
COL9A3-204ENST00000463487 M0R2T5 61 aa10.04□□□□□ -0.8
COL9A3-204ENST00000463487 Q5W150 140 aa10.04□□□□□ -0.8
COL9A3-204ENST00000463487 IGKV2D-30A0A075B6S6 120 aa10.03□□□□□ -0.8
COL9A3-204ENST00000463487 K7ERU9 68 aa10.03□□□□□ -0.8
COL9A3-204ENST00000463487 IGKV2-30P06310 120 aa10.03□□□□□ -0.8
COL9A3-204ENST00000463487 MPLKIPQ8TAP9 179 aa10.03□□□□□ -0.8
COL9A3-204ENST00000463487 A0A087WVE0 104 aa9.94□□□□□ -0.82
COL9A3-204ENST00000463487 TRAV22A0A0B4J277 110 aa9.91□□□□□ -0.82
COL9A3-204ENST00000463487 UQCRQO14949 82 aa9.89□□□□□ -0.83
COL9A3-204ENST00000463487 FLGP20930 4061 aaPredicted RBP9.87□□□□□ -0.83
COL9A3-204ENST00000463487 ATOX1O00244 68 aa9.84□□□□□ -0.83
COL9A3-204ENST00000463487 IMUPQ9GZP8 106 aa9.83□□□□□ -0.84
COL9A3-204ENST00000463487 LOC101927531A0A1B0GV80 90 aa9.82□□□□□ -0.84
COL9A3-204ENST00000463487 KRTAP10-6P60371 365 aaPredicted RBP9.81□□□□□ -0.84
COL9A3-204ENST00000463487 SCGB1A1P11684 91 aa9.8□□□□□ -0.84
COL9A3-204ENST00000463487 H0Y9P7 68 aa9.79□□□□□ -0.84
COL9A3-204ENST00000463487 C4orf26Q17RF5 130 aa9.78□□□□□ -0.84
COL9A3-204ENST00000463487 LORP23490 312 aaPredicted RBP9.77□□□□□ -0.85
COL9A3-204ENST00000463487 H1FX-AS1Q4G0G2 97 aa9.77□□□□□ -0.85
COL9A3-204ENST00000463487 CYP4F30PQ9H0H9 118 aa9.75□□□□□ -0.85
COL9A3-204ENST00000463487 MT-ATP8P03928 68 aa9.74□□□□□ -0.85
COL9A3-204ENST00000463487 MP68P56378 58 aa9.74□□□□□ -0.85
COL9A3-204ENST00000463487 OCR1Q9BZK8 76 aa9.74□□□□□ -0.85
COL9A3-204ENST00000463487 C5orf47Q569G3 176 aa9.7□□□□□ -0.86
COL9A3-204ENST00000463487 C1orf64Q8NEQ6 169 aa9.69□□□□□ -0.86
COL9A3-204ENST00000463487 LINC00208Q96KT6 92 aa9.67□□□□□ -0.86
COL9A3-204ENST00000463487 H3BPC8 53 aa9.64□□□□□ -0.87
COL9A3-204ENST00000463487 SMIM20Q8N5G0 67 aa9.64□□□□□ -0.87
COL9A3-204ENST00000463487 FAM236AA0A1B0GUQ0 79 aa9.63□□□□□ -0.87
COL9A3-204ENST00000463487 FAM236BA0A1B0GV22 79 aa9.63□□□□□ -0.87
COL9A3-204ENST00000463487 KRTAP9-2Q9BYQ4 174 aa9.6□□□□□ -0.87
COL9A3-204ENST00000463487 LCE2DQ5TA82 110 aaPredicted RBP9.57□□□□□ -0.88
COL9A3-204ENST00000463487 KRTAP3-1Q9BYR8 98 aa9.56□□□□□ -0.88
COL9A3-204ENST00000463487 S4R3F8 94 aa9.55□□□□□ -0.88
COL9A3-204ENST00000463487 TRAV7A0A075B6U4 112 aa9.54□□□□□ -0.88
COL9A3-204ENST00000463487 KRTAP9-8Q9BYQ0 159 aa9.54□□□□□ -0.88
COL9A3-204ENST00000463487 A8MUN3 132 aa9.49□□□□□ -0.89
COL9A3-204ENST00000463487 KLKP1Q107X0 134 aa9.49□□□□□ -0.89
COL9A3-204ENST00000463487 MT2AP02795 61 aa9.47□□□□□ -0.89
COL9A3-204ENST00000463487 KRTAP10-10P60014 251 aa9.45□□□□□ -0.9
COL9A3-204ENST00000463487 CSAG1Q6PB30 78 aa9.44□□□□□ -0.9
COL9A3-204ENST00000463487 LCA10Q71F78 164 aa9.43□□□□□ -0.9
COL9A3-204ENST00000463487 MT1FP04733 61 aa9.39□□□□□ -0.91
COL9A3-204ENST00000463487 SERP2Q8N6R1 65 aa9.36□□□□□ -0.91
COL9A3-204ENST00000463487 NDUFC1O43677 76 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms