RNA–Protein interactions for RNA: ENST00000461195.5

TRAF4-207, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 787 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-207ENST00000461195 Q6ZQT0 140 aa11.69□□□□□ -0.54
TRAF4-207ENST00000461195 NOTCH2NLQ7Z3S9 236 aa11.69□□□□□ -0.54
TRAF4-207ENST00000461195 LOC110117498A0A087WWA1 95 aa11.68□□□□□ -0.54
TRAF4-207ENST00000461195 C9orf118A6NHY6 69 aa11.66□□□□□ -0.54
TRAF4-207ENST00000461195 J3KT08 172 aa11.66□□□□□ -0.54
TRAF4-207ENST00000461195 PDE6GP18545 87 aa11.66□□□□□ -0.54
TRAF4-207ENST00000461195 A0A1B0GVX0 72 aa11.65□□□□□ -0.54
TRAF4-207ENST00000461195 A0A1B0GW54 56 aa11.64□□□□□ -0.55
TRAF4-207ENST00000461195 C8orf87E5RJ46 101 aa11.64□□□□□ -0.55
TRAF4-207ENST00000461195 TAX1BP3O14907 124 aa11.63□□□□□ -0.55
TRAF4-207ENST00000461195 C14orf132Q9NPU4 83 aa11.63□□□□□ -0.55
TRAF4-207ENST00000461195 A0A1W2PPM0 123 aa11.6□□□□□ -0.55
TRAF4-207ENST00000461195 M0R2T5 61 aa11.58□□□□□ -0.56
TRAF4-207ENST00000461195 H3BT86 120 aa11.56□□□□□ -0.56
TRAF4-207ENST00000461195 NDUFB1O75438 58 aa11.55□□□□□ -0.56
TRAF4-207ENST00000461195 FLGP20930 4061 aaPredicted RBP11.54□□□□□ -0.56
TRAF4-207ENST00000461195 KRTAP10-6P60371 365 aaPredicted RBP11.51□□□□□ -0.57
TRAF4-207ENST00000461195 MTURNQ8N3F0 131 aa11.51□□□□□ -0.57
TRAF4-207ENST00000461195 A8MWP4 228 aa11.5□□□□□ -0.57
TRAF4-207ENST00000461195 LORP23490 312 aaPredicted RBP11.5□□□□□ -0.57
TRAF4-207ENST00000461195 NREPQ16612 68 aa11.48□□□□□ -0.57
TRAF4-207ENST00000461195 IGKV3D-7A0A0C4DH55 119 aa11.45□□□□□ -0.58
TRAF4-207ENST00000461195 C8orf17Q9NRJ1 99 aa11.45□□□□□ -0.58
TRAF4-207ENST00000461195 SPCS1Q9Y6A9 102 aa11.45□□□□□ -0.58
TRAF4-207ENST00000461195 COL5A1-AS1Q5SY13 56 aa11.41□□□□□ -0.58
TRAF4-207ENST00000461195 Q8N9P0 234 aaPredicted RBP11.41□□□□□ -0.58
TRAF4-207ENST00000461195 ZCCHC13Q8WW36 166 aaKnown RBP11.41□□□□□ -0.58
TRAF4-207ENST00000461195 PRR15Q8IV56 129 aa11.4□□□□□ -0.58
TRAF4-207ENST00000461195 HRES1P13985 223 aa11.37□□□□□ -0.59
TRAF4-207ENST00000461195 FAM236DA0A1B0GTK5 79 aa11.36□□□□□ -0.59
TRAF4-207ENST00000461195 FAM236CP0DP71 79 aa11.36□□□□□ -0.59
TRAF4-207ENST00000461195 RBM12B-AS1Q9P1G2 102 aa11.36□□□□□ -0.59
TRAF4-207ENST00000461195 Q6ZVQ6 151 aa11.35□□□□□ -0.59
TRAF4-207ENST00000461195 MPLKIPQ8TAP9 179 aa11.34□□□□□ -0.59
TRAF4-207ENST00000461195 SMCPP49901 116 aaPredicted RBP11.32□□□□□ -0.6
TRAF4-207ENST00000461195 MMP24-AS1A0A0U1RRL7 71 aa11.3□□□□□ -0.6
TRAF4-207ENST00000461195 K7EQZ3 153 aa11.28□□□□□ -0.6
TRAF4-207ENST00000461195 BPY2O14599 106 aa11.28□□□□□ -0.6
TRAF4-207ENST00000461195 SPINK7P58062 85 aa11.28□□□□□ -0.6
TRAF4-207ENST00000461195 TMEM254Q8TBM7 123 aa11.28□□□□□ -0.6
TRAF4-207ENST00000461195 K7EP34 96 aa11.27□□□□□ -0.61
TRAF4-207ENST00000461195 MRPL34Q9BQ48 92 aaKnown RBP11.27□□□□□ -0.61
TRAF4-207ENST00000461195 PRO0461Q9UI25 63 aa11.26□□□□□ -0.61
TRAF4-207ENST00000461195 hDV103S1A0JD37 113 aa11.24□□□□□ -0.61
TRAF4-207ENST00000461195 PCP4L1A6NKN8 68 aa11.18□□□□□ -0.62
TRAF4-207ENST00000461195 NDUFS5O43920 106 aa11.17□□□□□ -0.62
TRAF4-207ENST00000461195 GTF2H5Q6ZYL4 71 aa11.16□□□□□ -0.62
TRAF4-207ENST00000461195 Q8N9L7 120 aa11.14□□□□□ -0.63
TRAF4-207ENST00000461195 KRTAP9-8Q9BYQ0 159 aa11.14□□□□□ -0.63
TRAF4-207ENST00000461195 UBL5Q9BZL1 73 aa11.13□□□□□ -0.63
TRAF4-207ENST00000461195 LINC00846Q9NV44 126 aa11.13□□□□□ -0.63
TRAF4-207ENST00000461195 WFDC13Q8IUB5 93 aa11.12□□□□□ -0.63
TRAF4-207ENST00000461195 CASC2Q6XLA1 102 aa11.09□□□□□ -0.63
TRAF4-207ENST00000461195 F8W1H4 67 aa11.07□□□□□ -0.64
TRAF4-207ENST00000461195 KRTAP9-7A8MTY7 169 aa11.04□□□□□ -0.64
TRAF4-207ENST00000461195 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.03□□□□□ -0.64
TRAF4-207ENST00000461195 HCG22E2RYF7 251 aa11.02□□□□□ -0.65
TRAF4-207ENST00000461195 ETDBQ3ZM63 59 aa11.01□□□□□ -0.65
TRAF4-207ENST00000461195 Q5W150 140 aa11.01□□□□□ -0.65
TRAF4-207ENST00000461195 MT2AP02795 61 aa11□□□□□ -0.65
TRAF4-207ENST00000461195 IGKV2D-30A0A075B6S6 120 aa10.97□□□□□ -0.65
TRAF4-207ENST00000461195 IGKV2-30P06310 120 aa10.97□□□□□ -0.65
TRAF4-207ENST00000461195 CXCL6P80162 114 aa10.96□□□□□ -0.65
TRAF4-207ENST00000461195 C7orf65Q6ZTY9 151 aa10.96□□□□□ -0.65
TRAF4-207ENST00000461195 USH2AO75445 5202 aa10.96□□□□□ -0.66
TRAF4-207ENST00000461195 SSPOA2VEC9 5147 aa10.96□□□□□ -0.66
TRAF4-207ENST00000461195 MT1FP04733 61 aa10.91□□□□□ -0.66
TRAF4-207ENST00000461195 KRTAP10-10P60014 251 aa10.89□□□□□ -0.67
TRAF4-207ENST00000461195 H1FX-AS1Q4G0G2 97 aa10.88□□□□□ -0.67
TRAF4-207ENST00000461195 KRTAP9-3Q9BYQ3 159 aa10.79□□□□□ -0.68
TRAF4-207ENST00000461195 FCGBPQ9Y6R7 5405 aaPredicted RBP10.78□□□□□ -0.68
TRAF4-207ENST00000461195 ACYP1P07311 99 aa10.78□□□□□ -0.68
TRAF4-207ENST00000461195 TP53AIP1Q9HCN2 124 aa10.78□□□□□ -0.68
TRAF4-207ENST00000461195 C4orf26Q17RF5 130 aa10.77□□□□□ -0.69
TRAF4-207ENST00000461195 FAM240AA0A1B0GVK7 77 aa10.72□□□□□ -0.69
TRAF4-207ENST00000461195 LCE2BO14633 110 aa10.71□□□□□ -0.69
TRAF4-207ENST00000461195 KRTAP19-1Q8IUB9 90 aa10.67□□□□□ -0.7
TRAF4-207ENST00000461195 ATP5EP2Q5VTU8 51 aa10.66□□□□□ -0.7
TRAF4-207ENST00000461195 C1orf64Q8NEQ6 169 aa10.6□□□□□ -0.71
TRAF4-207ENST00000461195 KRTAP3-1Q9BYR8 98 aa10.6□□□□□ -0.71
TRAF4-207ENST00000461195 HIST1H4AP62805 103 aaKnown RBP10.59□□□□□ -0.71
TRAF4-207ENST00000461195 A0A1B0GV90 55 aa10.56□□□□□ -0.72
TRAF4-207ENST00000461195 TRAV22A0A0B4J277 110 aa10.55□□□□□ -0.72
TRAF4-207ENST00000461195 CYP4F30PQ9H0H9 118 aa10.53□□□□□ -0.72
TRAF4-207ENST00000461195 S4R3F8 94 aa10.53□□□□□ -0.72
TRAF4-207ENST00000461195 LINC00643Q86TS7 51 aa10.52□□□□□ -0.73
TRAF4-207ENST00000461195 MACF1Q9UPN3 7388 aaKnown RBP10.52□□□□□ -0.73
TRAF4-207ENST00000461195 C5orf47Q569G3 176 aa10.51□□□□□ -0.73
TRAF4-207ENST00000461195 LOC101927531A0A1B0GV80 90 aa10.49□□□□□ -0.73
TRAF4-207ENST00000461195 UQCRQO14949 82 aa10.47□□□□□ -0.73
TRAF4-207ENST00000461195 SYNE2Q8WXH0 6885 aaKnown RBP10.47□□□□□ -0.73
TRAF4-207ENST00000461195 LCA10Q71F78 164 aa10.45□□□□□ -0.74
TRAF4-207ENST00000461195 A0A087WVE0 104 aa10.44□□□□□ -0.74
TRAF4-207ENST00000461195 CSAG1Q6PB30 78 aa10.44□□□□□ -0.74
TRAF4-207ENST00000461195 H0Y9P7 68 aa10.41□□□□□ -0.74
TRAF4-207ENST00000461195 ATOX1O00244 68 aa10.41□□□□□ -0.74
TRAF4-207ENST00000461195 FAM236AA0A1B0GUQ0 79 aa10.35□□□□□ -0.75
TRAF4-207ENST00000461195 FAM236BA0A1B0GV22 79 aa10.35□□□□□ -0.75
TRAF4-207ENST00000461195 J3QR89 54 aa10.33□□□□□ -0.76
TRAF4-207ENST00000461195 KRTAP19-6Q3LI70 58 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms