RNA–Protein interactions for RNA: ENST00000460633.1

HLA-DQA1-205, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

Gene HLA-DQA1, Length 5,450 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-205ENST00000460633 KRTAP1-5Q9BYS1 174 aa3.62□□□□□ -1.83
HLA-DQA1-205ENST00000460633 FRYLO94915 3013 aa3.62□□□□□ -1.83
HLA-DQA1-205ENST00000460633 NSD1Q96L73 2696 aaPredicted RBP3.61□□□□□ -1.83
HLA-DQA1-205ENST00000460633 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
HLA-DQA1-205ENST00000460633 HIVEP1P15822 2718 aa3.61□□□□□ -1.83
HLA-DQA1-205ENST00000460633 TPRXLQ17RH7 258 aa3.6□□□□□ -1.83
HLA-DQA1-205ENST00000460633 SPATA8Q6RVD6 105 aa3.6□□□□□ -1.83
HLA-DQA1-205ENST00000460633 A0A087X002 238 aa3.58□□□□□ -1.84
HLA-DQA1-205ENST00000460633 DMXL1Q9Y485 3027 aa3.57□□□□□ -1.84
HLA-DQA1-205ENST00000460633 A0A1B0GVY2 172 aa3.57□□□□□ -1.84
HLA-DQA1-205ENST00000460633 KRTAP7-1Q8IUC3 87 aa3.57□□□□□ -1.84
HLA-DQA1-205ENST00000460633 FLNCQ14315 2725 aa3.56□□□□□ -1.84
HLA-DQA1-205ENST00000460633 ITPR2Q14571 2701 aa3.56□□□□□ -1.84
HLA-DQA1-205ENST00000460633 TENM4Q6N022 2769 aa3.56□□□□□ -1.84
HLA-DQA1-205ENST00000460633 ZZEF1O43149 2961 aa3.55□□□□□ -1.84
HLA-DQA1-205ENST00000460633 NBEAL2Q6ZNJ1 2754 aa3.55□□□□□ -1.84
HLA-DQA1-205ENST00000460633 TNP1P09430 55 aa3.55□□□□□ -1.84
HLA-DQA1-205ENST00000460633 LRBAP50851 2863 aa3.55□□□□□ -1.84
HLA-DQA1-205ENST00000460633 KRTAP11-1Q8IUC1 163 aa3.55□□□□□ -1.84
HLA-DQA1-205ENST00000460633 UTP20O75691 2785 aaKnown RBP3.54□□□□□ -1.84
HLA-DQA1-205ENST00000460633 ANK3Q12955 4377 aaKnown RBP3.54□□□□□ -1.84
HLA-DQA1-205ENST00000460633 MAST4O15021 2626 aa3.54□□□□□ -1.84
HLA-DQA1-205ENST00000460633 TEP1Q99973 2627 aaKnown RBP3.54□□□□□ -1.84
HLA-DQA1-205ENST00000460633 A8MUU9 505 aa3.54□□□□□ -1.84
HLA-DQA1-205ENST00000460633 ADGRG4Q8IZF6 3080 aa3.53□□□□□ -1.84
HLA-DQA1-205ENST00000460633 MAP1AP78559 2803 aaPredicted RBP3.53□□□□□ -1.84
HLA-DQA1-205ENST00000460633 BOD1L1Q8NFC6 3051 aa3.53□□□□□ -1.84
HLA-DQA1-205ENST00000460633 KRTAP23-1A1A580 65 aa3.53□□□□□ -1.85
HLA-DQA1-205ENST00000460633 MGAM2Q2M2H8 2515 aa3.52□□□□□ -1.85
HLA-DQA1-205ENST00000460633 CENPEQ02224 2701 aa3.52□□□□□ -1.85
HLA-DQA1-205ENST00000460633 TACC2O95359 2948 aa3.52□□□□□ -1.85
HLA-DQA1-205ENST00000460633 ALMS1Q8TCU4 4167 aa3.51□□□□□ -1.85
HLA-DQA1-205ENST00000460633 ATRQ13535 2644 aa3.51□□□□□ -1.85
HLA-DQA1-205ENST00000460633 DMBT1Q9UGM3 2413 aaPredicted RBP3.51□□□□□ -1.85
HLA-DQA1-205ENST00000460633 DMXL2Q8TDJ6 3036 aa3.51□□□□□ -1.85
HLA-DQA1-205ENST00000460633 CUBNO60494 3623 aa3.5□□□□□ -1.85
HLA-DQA1-205ENST00000460633 KRTAP10-10P60014 251 aa3.5□□□□□ -1.85
HLA-DQA1-205ENST00000460633 TEX15Q9BXT5 2789 aa3.49□□□□□ -1.85
HLA-DQA1-205ENST00000460633 HRNRQ86YZ3 2850 aaPredicted RBP3.48□□□□□ -1.85
HLA-DQA1-205ENST00000460633 PP632Q6XCG6 107 aa3.48□□□□□ -1.85
HLA-DQA1-205ENST00000460633 ZNF469Q96JG9 3925 aaPredicted RBP3.47□□□□□ -1.85
HLA-DQA1-205ENST00000460633 OTOGQ6ZRI0 2925 aa3.46□□□□□ -1.85
HLA-DQA1-205ENST00000460633 SETXQ7Z333 2677 aaKnown RBP3.46□□□□□ -1.86
HLA-DQA1-205ENST00000460633 FBN2P35556 2912 aa3.46□□□□□ -1.86
HLA-DQA1-205ENST00000460633 CFAP47Q6ZTR5 3102 aa3.45□□□□□ -1.86
HLA-DQA1-205ENST00000460633 COL6A5A8TX70 2615 aa3.45□□□□□ -1.86
HLA-DQA1-205ENST00000460633 ATMQ13315 3056 aa3.45□□□□□ -1.86
HLA-DQA1-205ENST00000460633 SVEP1Q4LDE5 3571 aa3.45□□□□□ -1.86
HLA-DQA1-205ENST00000460633 P0C880 135 aa3.45□□□□□ -1.86
HLA-DQA1-205ENST00000460633 KRTAP13-1Q8IUC0 172 aa3.43□□□□□ -1.86
HLA-DQA1-205ENST00000460633 KRTAP10-8P60410 259 aa3.41□□□□□ -1.86
HLA-DQA1-205ENST00000460633 DCHS1Q96JQ0 3298 aa3.41□□□□□ -1.86
HLA-DQA1-205ENST00000460633 LOC400499M0QZD8 3231 aa3.4□□□□□ -1.87
HLA-DQA1-205ENST00000460633 NBEAL1Q6ZS30 2694 aa3.39□□□□□ -1.87
HLA-DQA1-205ENST00000460633 CSMD3Q7Z407 3707 aa3.39□□□□□ -1.87
HLA-DQA1-205ENST00000460633 XP32Q5T750 250 aa3.39□□□□□ -1.87
HLA-DQA1-205ENST00000460633 STAB1Q9NY15 2570 aa3.39□□□□□ -1.87
HLA-DQA1-205ENST00000460633 KRTAP13-2Q52LG2 175 aa3.37□□□□□ -1.87
HLA-DQA1-205ENST00000460633 COL12A1Q99715 3063 aa3.36□□□□□ -1.87
HLA-DQA1-205ENST00000460633 AKAP9Q99996 3911 aa3.34□□□□□ -1.87
HLA-DQA1-205ENST00000460633 NOTCH1P46531 2555 aa3.34□□□□□ -1.87
HLA-DQA1-205ENST00000460633 FBN3Q75N90 2809 aa3.33□□□□□ -1.88
HLA-DQA1-205ENST00000460633 STAB2Q8WWQ8 2551 aa3.33□□□□□ -1.88
HLA-DQA1-205ENST00000460633 H0YAA0 97 aa3.33□□□□□ -1.88
HLA-DQA1-205ENST00000460633 ANK2Q01484 3957 aa3.32□□□□□ -1.88
HLA-DQA1-205ENST00000460633 DNAH6Q9C0G6 4158 aa3.31□□□□□ -1.88
HLA-DQA1-205ENST00000460633 CELSR2Q9HCU4 2923 aa3.31□□□□□ -1.88
HLA-DQA1-205ENST00000460633 C10orf95Q9H7T3 257 aa3.31□□□□□ -1.88
HLA-DQA1-205ENST00000460633 MXRA5Q9NR99 2828 aa3.31□□□□□ -1.88
HLA-DQA1-205ENST00000460633 KRTAP1-4P0C5Y4 121 aa3.3□□□□□ -1.88
HLA-DQA1-205ENST00000460633 KRTAP13-3Q3SY46 172 aa3.3□□□□□ -1.88
HLA-DQA1-205ENST00000460633 HUWE1Q7Z6Z7 4374 aaKnown RBP3.27□□□□□ -1.89
HLA-DQA1-205ENST00000460633 ZANQ9Y493 2812 aa3.27□□□□□ -1.89
HLA-DQA1-205ENST00000460633 NIPBLQ6KC79 2804 aaeCLIP3.26□□□□□ -1.89
HLA-DQA1-205ENST00000460633 DNAH3Q8TD57 4116 aa3.23□□□□□ -1.89
HLA-DQA1-205ENST00000460633 DYNC2H1Q8NCM8 4307 aaKnown RBP3.21□□□□□ -1.89
HLA-DQA1-205ENST00000460633 DNAH9Q9NYC9 4486 aa3.2□□□□□ -1.9
HLA-DQA1-205ENST00000460633 DCHS2Q6V1P9 2916 aa3.2□□□□□ -1.9
HLA-DQA1-205ENST00000460633 DNAH1Q9P2D7 4330 aa3.2□□□□□ -1.9
HLA-DQA1-205ENST00000460633 NF1P21359 2839 aa3.2□□□□□ -1.9
HLA-DQA1-205ENST00000460633 FBN1P35555 2871 aaKnown RBP3.19□□□□□ -1.9
HLA-DQA1-205ENST00000460633 KRTAP15-1Q3LI76 137 aa3.18□□□□□ -1.9
HLA-DQA1-205ENST00000460633 KRTAP3-3Q9BYR6 98 aa3.17□□□□□ -1.9
HLA-DQA1-205ENST00000460633 KRTAP3-2Q9BYR7 98 aa3.17□□□□□ -1.9
HLA-DQA1-205ENST00000460633 KRTAP10-4P60372 401 aaPredicted RBP3.17□□□□□ -1.9
HLA-DQA1-205ENST00000460633 CRYBG3Q68DQ2 2970 aa3.16□□□□□ -1.9
HLA-DQA1-205ENST00000460633 CELSR1Q9NYQ6 3014 aa3.13□□□□□ -1.91
HLA-DQA1-205ENST00000460633 DNAH10Q8IVF4 4471 aa3.13□□□□□ -1.91
HLA-DQA1-205ENST00000460633 MT1HL1P0DM35 61 aa3.12□□□□□ -1.91
HLA-DQA1-205ENST00000460633 CMYA5Q8N3K9 4069 aa3.1□□□□□ -1.91
HLA-DQA1-205ENST00000460633 SRRM2Q9UQ35 2752 aaKnown RBP3.1□□□□□ -1.91
HLA-DQA1-205ENST00000460633 TGP01266 2768 aa3.1□□□□□ -1.91
HLA-DQA1-205ENST00000460633 DNAH17Q9UFH2 4485 aa3.09□□□□□ -1.91
HLA-DQA1-205ENST00000460633 DNAH11Q96DT5 4516 aa3.09□□□□□ -1.91
HLA-DQA1-205ENST00000460633 KRTAP12-2P59991 146 aa3.09□□□□□ -1.92
HLA-DQA1-205ENST00000460633 VPS13DQ5THJ4 4388 aa3.08□□□□□ -1.92
HLA-DQA1-205ENST00000460633 VWFP04275 2813 aa3.06□□□□□ -1.92
HLA-DQA1-205ENST00000460633 TENM3Q9P273 2699 aa3.06□□□□□ -1.92
HLA-DQA1-205ENST00000460633 TENM1Q9UKZ4 2725 aa3.06□□□□□ -1.92
HLA-DQA1-205ENST00000460633 KRTAP3-1Q9BYR8 98 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms