RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 DMBT1Q9UGM3 2413 aaPredicted RBP8.63□□□□□ -1.03
PTPRU-205ENST00000460170 NOTCH2NLQ7Z3S9 236 aa8.62□□□□□ -1.03
PTPRU-205ENST00000460170 LCE6AA0A183 80 aa8.61□□□□□ -1.03
PTPRU-205ENST00000460170 CSAG1Q6PB30 78 aa8.61□□□□□ -1.03
PTPRU-205ENST00000460170 CRYBG3Q68DQ2 2970 aa8.61□□□□□ -1.03
PTPRU-205ENST00000460170 KRTAP13-1Q8IUC0 172 aa8.58□□□□□ -1.04
PTPRU-205ENST00000460170 TENM4Q6N022 2769 aa8.56□□□□□ -1.04
PTPRU-205ENST00000460170 ASB16-AS1Q495Z4 193 aa8.56□□□□□ -1.04
PTPRU-205ENST00000460170 FLG2Q5D862 2391 aaPredicted RBP8.55□□□□□ -1.04
PTPRU-205ENST00000460170 MXRA5Q9NR99 2828 aa8.53□□□□□ -1.04
PTPRU-205ENST00000460170 S4R3F8 94 aa8.53□□□□□ -1.04
PTPRU-205ENST00000460170 Q5VSD8 79 aa8.51□□□□□ -1.05
PTPRU-205ENST00000460170 A0A0A0MQY5 61 aa8.51□□□□□ -1.05
PTPRU-205ENST00000460170 RELNP78509 3460 aa8.46□□□□□ -1.06
PTPRU-205ENST00000460170 WDFY3Q8IZQ1 3526 aa8.44□□□□□ -1.06
PTPRU-205ENST00000460170 KRTAP13-2Q52LG2 175 aa8.44□□□□□ -1.06
PTPRU-205ENST00000460170 RPS29P62273 56 aaKnown RBP8.4□□□□□ -1.06
PTPRU-205ENST00000460170 H1FX-AS1Q4G0G2 97 aa8.39□□□□□ -1.07
PTPRU-205ENST00000460170 CAMK2N1Q7Z7J9 78 aa8.38□□□□□ -1.07
PTPRU-205ENST00000460170 RPL37P61927 97 aaKnown RBP8.36□□□□□ -1.07
PTPRU-205ENST00000460170 SEC61BP60468 96 aaKnown RBP8.34□□□□□ -1.07
PTPRU-205ENST00000460170 SPATA8Q6RVD6 105 aa8.34□□□□□ -1.07
PTPRU-205ENST00000460170 DCHS1Q96JQ0 3298 aa8.33□□□□□ -1.08
PTPRU-205ENST00000460170 R4GN34 69 aa8.32□□□□□ -1.08
PTPRU-205ENST00000460170 LAMA5O15230 3695 aa8.3□□□□□ -1.08
PTPRU-205ENST00000460170 CELSR1Q9NYQ6 3014 aa8.3□□□□□ -1.08
PTPRU-205ENST00000460170 TENM3Q9P273 2699 aa8.28□□□□□ -1.08
PTPRU-205ENST00000460170 ZFHX4Q86UP3 3567 aa8.28□□□□□ -1.08
PTPRU-205ENST00000460170 ASPMQ8IZT6 3477 aa8.27□□□□□ -1.09
PTPRU-205ENST00000460170 ROMO1P60602 79 aa8.26□□□□□ -1.09
PTPRU-205ENST00000460170 A6NN06 94 aa8.23□□□□□ -1.09
PTPRU-205ENST00000460170 M0R2T5 61 aa8.23□□□□□ -1.09
PTPRU-205ENST00000460170 MUC3AQ02505 3323 aa8.23□□□□□ -1.09
PTPRU-205ENST00000460170 A8MU10 97 aa8.21□□□□□ -1.1
PTPRU-205ENST00000460170 ADM2Q7Z4H4 148 aa8.19□□□□□ -1.1
PTPRU-205ENST00000460170 M0QZ58 72 aa8.19□□□□□ -1.1
PTPRU-205ENST00000460170 KRTAP16-1A8MUX0 517 aa8.18□□□□□ -1.1
PTPRU-205ENST00000460170 DMDP11532 3685 aa8.18□□□□□ -1.1
PTPRU-205ENST00000460170 TENM1Q9UKZ4 2725 aa8.14□□□□□ -1.11
PTPRU-205ENST00000460170 KRTAP21-3Q3LHN1 58 aa8.12□□□□□ -1.11
PTPRU-205ENST00000460170 KRTAP1-4P0C5Y4 121 aa8.12□□□□□ -1.11
PTPRU-205ENST00000460170 A8MUU9 505 aa8.11□□□□□ -1.11
PTPRU-205ENST00000460170 PDZD2O15018 2839 aa8.11□□□□□ -1.11
PTPRU-205ENST00000460170 C20orf166-AS1Q96NR2 134 aa8.09□□□□□ -1.11
PTPRU-205ENST00000460170 CSMD1Q96PZ7 3565 aa8.06□□□□□ -1.12
PTPRU-205ENST00000460170 SMG1Q96Q15 3661 aaKnown RBP8.05□□□□□ -1.12
PTPRU-205ENST00000460170 KRTAP25-1Q3LHN0 102 aa8.04□□□□□ -1.12
PTPRU-205ENST00000460170 VWFP04275 2813 aa8.02□□□□□ -1.13
PTPRU-205ENST00000460170 NDUFAF8A1L188 74 aa8□□□□□ -1.13
PTPRU-205ENST00000460170 TENM2Q9NT68 2774 aa7.99□□□□□ -1.13
PTPRU-205ENST00000460170 FBN1P35555 2871 aaKnown RBP7.96□□□□□ -1.13
PTPRU-205ENST00000460170 PKD1L1Q8TDX9 2849 aa7.95□□□□□ -1.14
PTPRU-205ENST00000460170 TGP01266 2768 aa7.94□□□□□ -1.14
PTPRU-205ENST00000460170 OTOGQ6ZRI0 2925 aa7.92□□□□□ -1.14
PTPRU-205ENST00000460170 SVEP1Q4LDE5 3571 aa7.86□□□□□ -1.15
PTPRU-205ENST00000460170 NBPF19A0A087WUL8 3843 aa7.85□□□□□ -1.15
PTPRU-205ENST00000460170 XP32Q5T750 250 aa7.84□□□□□ -1.15
PTPRU-205ENST00000460170 PLAC4Q8WY50 150 aa7.84□□□□□ -1.15
PTPRU-205ENST00000460170 KRTAP13-3Q3SY46 172 aa7.79□□□□□ -1.16
PTPRU-205ENST00000460170 H0YAA0 97 aa7.75□□□□□ -1.17
PTPRU-205ENST00000460170 SPENQ96T58 3664 aaKnown RBP7.72□□□□□ -1.17
PTPRU-205ENST00000460170 ZFHX3Q15911 3703 aa7.71□□□□□ -1.18
PTPRU-205ENST00000460170 CUBNO60494 3623 aa7.69□□□□□ -1.18
PTPRU-205ENST00000460170 ANK3Q12955 4377 aaKnown RBP7.67□□□□□ -1.18
PTPRU-205ENST00000460170 CSMD2Q7Z408 3487 aa7.66□□□□□ -1.18
PTPRU-205ENST00000460170 TPRXLQ17RH7 258 aa7.65□□□□□ -1.18
PTPRU-205ENST00000460170 A0A1B0GVY2 172 aa7.61□□□□□ -1.19
PTPRU-205ENST00000460170 BSNQ9UPA5 3926 aa7.59□□□□□ -1.19
PTPRU-205ENST00000460170 KRTAP10-8P60410 259 aa7.58□□□□□ -1.2
PTPRU-205ENST00000460170 FBN3Q75N90 2809 aa7.57□□□□□ -1.2
PTPRU-205ENST00000460170 TNP1P09430 55 aa7.57□□□□□ -1.2
PTPRU-205ENST00000460170 C10orf95Q9H7T3 257 aa7.55□□□□□ -1.2
PTPRU-205ENST00000460170 P0C880 135 aa7.54□□□□□ -1.2
PTPRU-205ENST00000460170 TRRAPQ9Y4A5 3859 aa7.54□□□□□ -1.2
PTPRU-205ENST00000460170 SRRM2Q9UQ35 2752 aaKnown RBP7.46□□□□□ -1.22
PTPRU-205ENST00000460170 PP632Q6XCG6 107 aa7.44□□□□□ -1.22
PTPRU-205ENST00000460170 MEGF8Q7Z7M0 2845 aa7.44□□□□□ -1.22
PTPRU-205ENST00000460170 KRTAP3-1Q9BYR8 98 aa7.37□□□□□ -1.23
PTPRU-205ENST00000460170 COL7A1Q02388 2944 aa7.31□□□□□ -1.24
PTPRU-205ENST00000460170 KRTAP12-2P59991 146 aa7.25□□□□□ -1.25
PTPRU-205ENST00000460170 VPS13CQ709C8 3753 aa7.25□□□□□ -1.25
PTPRU-205ENST00000460170 KRTAP10-10P60014 251 aa7.21□□□□□ -1.25
PTPRU-205ENST00000460170 KRTAP12-1P59990 96 aa7.17□□□□□ -1.26
PTPRU-205ENST00000460170 HUWE1Q7Z6Z7 4374 aaKnown RBP7.16□□□□□ -1.26
PTPRU-205ENST00000460170 KRTAP10-6P60371 365 aaPredicted RBP7.13□□□□□ -1.27
PTPRU-205ENST00000460170 KRTAP13-4Q3LI77 160 aa7.09□□□□□ -1.27
PTPRU-205ENST00000460170 ZNF469Q96JG9 3925 aaPredicted RBP7.03□□□□□ -1.28
PTPRU-205ENST00000460170 MT1HL1P0DM35 61 aa7.02□□□□□ -1.29
PTPRU-205ENST00000460170 KRTAP10-4P60372 401 aaPredicted RBP7.02□□□□□ -1.29
PTPRU-205ENST00000460170 PRO2289Q9P1D8 64 aa7.01□□□□□ -1.29
PTPRU-205ENST00000460170 KRTAP3-3Q9BYR6 98 aa6.94□□□□□ -1.3
PTPRU-205ENST00000460170 KRTAP3-2Q9BYR7 98 aa6.92□□□□□ -1.3
PTPRU-205ENST00000460170 AKAP9Q99996 3911 aa6.89□□□□□ -1.31
PTPRU-205ENST00000460170 CSMD3Q7Z407 3707 aa6.87□□□□□ -1.31
PTPRU-205ENST00000460170 DNAH9Q9NYC9 4486 aa6.86□□□□□ -1.31
PTPRU-205ENST00000460170 PLECQ15149 4684 aaKnown RBP6.72□□□□□ -1.33
PTPRU-205ENST00000460170 KRTAP4-5Q9BYR2 181 aa6.72□□□□□ -1.33
PTPRU-205ENST00000460170 DNAH1Q9P2D7 4330 aa6.71□□□□□ -1.33
PTPRU-205ENST00000460170 DNAH5Q8TE73 4624 aa6.7□□□□□ -1.34
PTPRU-205ENST00000460170 ALMS1Q8TCU4 4167 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms