RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 C4orf26Q17RF5 130 aa9.78□□□□□ -0.84
CCDC43-202ENST00000457422 FAM229BQ4G0N7 80 aa9.76□□□□□ -0.85
CCDC43-202ENST00000457422 C1orf64Q8NEQ6 169 aa9.75□□□□□ -0.85
CCDC43-202ENST00000457422 A0A087X002 238 aa9.75□□□□□ -0.85
CCDC43-202ENST00000457422 SPINK6Q6UWN8 80 aa9.75□□□□□ -0.85
CCDC43-202ENST00000457422 MRPL34Q9BQ48 92 aaKnown RBP9.75□□□□□ -0.85
CCDC43-202ENST00000457422 SPANXA2-OT1Q8N9U9 137 aa9.74□□□□□ -0.85
CCDC43-202ENST00000457422 NOTCH2NLQ7Z3S9 236 aa9.73□□□□□ -0.85
CCDC43-202ENST00000457422 KRTAP13-2Q52LG2 175 aa9.73□□□□□ -0.85
CCDC43-202ENST00000457422 VPS13BQ7Z7G8 4022 aa9.72□□□□□ -0.85
CCDC43-202ENST00000457422 PRR4Q16378 134 aa9.71□□□□□ -0.85
CCDC43-202ENST00000457422 NDUFS5O43920 106 aa9.69□□□□□ -0.86
CCDC43-202ENST00000457422 KRTAP1-4P0C5Y4 121 aa9.68□□□□□ -0.86
CCDC43-202ENST00000457422 PKHD1P08F94 4074 aa9.67□□□□□ -0.86
CCDC43-202ENST00000457422 C8orf87E5RJ46 101 aa9.66□□□□□ -0.86
CCDC43-202ENST00000457422 DYNC1H1Q14204 4646 aaKnown RBP9.62□□□□□ -0.87
CCDC43-202ENST00000457422 IGLV7-46A0A075B6I9 117 aa9.6□□□□□ -0.87
CCDC43-202ENST00000457422 C1orf195Q5TG92 126 aa9.6□□□□□ -0.87
CCDC43-202ENST00000457422 LINC00336Q6ZUF6 198 aa9.6□□□□□ -0.87
CCDC43-202ENST00000457422 MPLKIPQ8TAP9 179 aa9.59□□□□□ -0.87
CCDC43-202ENST00000457422 LIMD2Q9BT23 127 aa9.59□□□□□ -0.87
CCDC43-202ENST00000457422 PCOTHQ58A44 107 aa9.58□□□□□ -0.88
CCDC43-202ENST00000457422 KRTAP13-3Q3SY46 172 aa9.57□□□□□ -0.88
CCDC43-202ENST00000457422 PLA2G1BP04054 148 aaKnown RBP9.55□□□□□ -0.88
CCDC43-202ENST00000457422 LINC00313P59037 77 aa9.55□□□□□ -0.88
CCDC43-202ENST00000457422 Q1T7F1 81 aa9.55□□□□□ -0.88
CCDC43-202ENST00000457422 LOC101927531A0A1B0GV80 90 aa9.54□□□□□ -0.88
CCDC43-202ENST00000457422 Q5W150 140 aa9.53□□□□□ -0.88
CCDC43-202ENST00000457422 TYMSOSQ8TAI1 123 aa9.52□□□□□ -0.88
CCDC43-202ENST00000457422 Q8N9P0 234 aaPredicted RBP9.52□□□□□ -0.89
CCDC43-202ENST00000457422 A0A1B0GVY2 172 aa9.51□□□□□ -0.89
CCDC43-202ENST00000457422 APOBP04114 4563 aaKnown RBP9.5□□□□□ -0.89
CCDC43-202ENST00000457422 SPINK1P00995 79 aa9.5□□□□□ -0.89
CCDC43-202ENST00000457422 C4orf48Q5BLP8 95 aa9.5□□□□□ -0.89
CCDC43-202ENST00000457422 RYR2Q92736 4967 aa9.49□□□□□ -0.89
CCDC43-202ENST00000457422 SMR3BP02814 79 aaPredicted RBP9.47□□□□□ -0.89
CCDC43-202ENST00000457422 KRTAP16-1A8MUX0 517 aa9.47□□□□□ -0.89
CCDC43-202ENST00000457422 FAM229AH3BQW9 127 aa9.46□□□□□ -0.89
CCDC43-202ENST00000457422 COA5Q86WW8 74 aa9.46□□□□□ -0.89
CCDC43-202ENST00000457422 V9GYY9 64 aa9.45□□□□□ -0.9
CCDC43-202ENST00000457422 RPS29P62273 56 aaKnown RBP9.44□□□□□ -0.9
CCDC43-202ENST00000457422 PRR26Q8N8Z3 221 aa9.44□□□□□ -0.9
CCDC43-202ENST00000457422 FAT1Q14517 4588 aa9.44□□□□□ -0.9
CCDC43-202ENST00000457422 LINC00304Q8N9R0 145 aa9.41□□□□□ -0.9
CCDC43-202ENST00000457422 SPAG11AQ6PDA7 123 aa9.4□□□□□ -0.9
CCDC43-202ENST00000457422 RETNLBQ9BQ08 111 aa9.4□□□□□ -0.9
CCDC43-202ENST00000457422 KRTAP10-4P60372 401 aaPredicted RBP9.39□□□□□ -0.91
CCDC43-202ENST00000457422 PRO0628Q9UI54 55 aa9.38□□□□□ -0.91
CCDC43-202ENST00000457422 PKHD1L1Q86WI1 4243 aa9.36□□□□□ -0.91
CCDC43-202ENST00000457422 KMT2CQ8NEZ4 4911 aaKnown RBP9.36□□□□□ -0.91
CCDC43-202ENST00000457422 IGKV2-30P06310 120 aa9.35□□□□□ -0.91
CCDC43-202ENST00000457422 HRES1P13985 223 aa9.35□□□□□ -0.91
CCDC43-202ENST00000457422 PSPHP1O15172 72 aa9.34□□□□□ -0.91
CCDC43-202ENST00000457422 BRK1Q8WUW1 75 aa9.32□□□□□ -0.92
CCDC43-202ENST00000457422 A8MUN3 132 aa9.31□□□□□ -0.92
CCDC43-202ENST00000457422 Q5VV11 94 aa9.28□□□□□ -0.92
CCDC43-202ENST00000457422 DMAC1Q96GE9 116 aa9.28□□□□□ -0.92
CCDC43-202ENST00000457422 ACYP2P14621 99 aa9.27□□□□□ -0.93
CCDC43-202ENST00000457422 PRR15LQ9BU68 103 aa9.24□□□□□ -0.93
CCDC43-202ENST00000457422 LINC01558Q9Y6Z2 57 aa9.24□□□□□ -0.93
CCDC43-202ENST00000457422 IGKV2D-30A0A075B6S6 120 aa9.22□□□□□ -0.93
CCDC43-202ENST00000457422 Q75L30 129 aa9.19□□□□□ -0.94
CCDC43-202ENST00000457422 CHKB-CPT1BH3BT56 60 aa9.16□□□□□ -0.94
CCDC43-202ENST00000457422 C9orf92A6NGG3 77 aa9.14□□□□□ -0.95
CCDC43-202ENST00000457422 C20orf166-AS1Q96NR2 134 aa9.14□□□□□ -0.95
CCDC43-202ENST00000457422 A8MUU9 505 aa9.13□□□□□ -0.95
CCDC43-202ENST00000457422 C7orf65Q6ZTY9 151 aa9.13□□□□□ -0.95
CCDC43-202ENST00000457422 HSPG2P98160 4391 aa9.13□□□□□ -0.95
CCDC43-202ENST00000457422 RYR3Q15413 4870 aa9.11□□□□□ -0.95
CCDC43-202ENST00000457422 TNXBP22105 4242 aa9.08□□□□□ -0.96
CCDC43-202ENST00000457422 FLG2Q5D862 2391 aaPredicted RBP9.06□□□□□ -0.96
CCDC43-202ENST00000457422 LRP1Q07954 4544 aaKnown RBP9.06□□□□□ -0.96
CCDC43-202ENST00000457422 Q5VSD8 79 aa9.06□□□□□ -0.96
CCDC43-202ENST00000457422 FAT3Q8TDW7 4589 aa9.05□□□□□ -0.96
CCDC43-202ENST00000457422 A6NED7 52 aa9.04□□□□□ -0.96
CCDC43-202ENST00000457422 RYR1P21817 5038 aa9.04□□□□□ -0.96
CCDC43-202ENST00000457422 Q8N1X5 172 aa9.03□□□□□ -0.96
CCDC43-202ENST00000457422 A8MU10 97 aa9.03□□□□□ -0.96
CCDC43-202ENST00000457422 KRTAP10-8P60410 259 aa9.03□□□□□ -0.96
CCDC43-202ENST00000457422 LCA10Q71F78 164 aa9□□□□□ -0.97
CCDC43-202ENST00000457422 CDC42SE1Q9NRR8 79 aa8.98□□□□□ -0.97
CCDC43-202ENST00000457422 SPINK7P58062 85 aa8.95□□□□□ -0.98
CCDC43-202ENST00000457422 KRTAP17-1Q9BYP8 105 aa8.94□□□□□ -0.98
CCDC43-202ENST00000457422 A0A1B0GU69 56 aa8.92□□□□□ -0.98
CCDC43-202ENST00000457422 ATP11AUNQ6ZP68 121 aa8.9□□□□□ -0.98
CCDC43-202ENST00000457422 KIAA1109Q2LD37 5005 aa8.86□□□□□ -0.99
CCDC43-202ENST00000457422 KRTAP3-1Q9BYR8 98 aa8.84□□□□□ -0.99
CCDC43-202ENST00000457422 SPTSSBQ8NFR3 76 aa8.83□□□□□ -1
CCDC43-202ENST00000457422 PMAIP1Q13794 54 aa8.82□□□□□ -1
CCDC43-202ENST00000457422 MYCBP2O75592 4640 aa8.8□□□□□ -1
CCDC43-202ENST00000457422 DMBT1Q9UGM3 2413 aaPredicted RBP8.79□□□□□ -1
CCDC43-202ENST00000457422 MT1HL1P0DM35 61 aa8.78□□□□□ -1
CCDC43-202ENST00000457422 RPL37P61927 97 aaKnown RBP8.78□□□□□ -1
CCDC43-202ENST00000457422 COX6B2Q6YFQ2 88 aa8.76□□□□□ -1.01
CCDC43-202ENST00000457422 EPPK1P58107 5090 aaKnown RBP8.76□□□□□ -1.01
CCDC43-202ENST00000457422 UQCR11O14957 56 aa8.74□□□□□ -1.01
CCDC43-202ENST00000457422 XP32Q5T750 250 aa8.74□□□□□ -1.01
CCDC43-202ENST00000457422 SPATA8Q6RVD6 105 aa8.74□□□□□ -1.01
CCDC43-202ENST00000457422 A6NN06 94 aa8.73□□□□□ -1.01
CCDC43-202ENST00000457422 SEC61GP60059 68 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms