RNA–Protein interactions for RNA: ENST00000453091.6

RIF1-206, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 8,053 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-206ENST00000453091 UNC79Q9P2D8 2635 aa4.24□□□□□ -1.73
RIF1-206ENST00000453091 A8MUU9 505 aa4.23□□□□□ -1.73
RIF1-206ENST00000453091 A0A0A0MQY5 61 aa4.22□□□□□ -1.73
RIF1-206ENST00000453091 ASB16-AS1Q495Z4 193 aa4.22□□□□□ -1.73
RIF1-206ENST00000453091 SEC61BP60468 96 aaKnown RBP4.22□□□□□ -1.73
RIF1-206ENST00000453091 TEX15Q9BXT5 2789 aa4.21□□□□□ -1.74
RIF1-206ENST00000453091 ITPR1Q14643 2758 aa4.19□□□□□ -1.74
RIF1-206ENST00000453091 A0A1B0GVY2 172 aa4.19□□□□□ -1.74
RIF1-206ENST00000453091 ASH1LQ9NR48 2969 aaKnown RBP4.18□□□□□ -1.74
RIF1-206ENST00000453091 CSMD1Q96PZ7 3565 aa4.18□□□□□ -1.74
RIF1-206ENST00000453091 UBR5O95071 2799 aaPredicted RBP4.17□□□□□ -1.74
RIF1-206ENST00000453091 DMDP11532 3685 aa4.17□□□□□ -1.74
RIF1-206ENST00000453091 H0YAA0 97 aa4.17□□□□□ -1.74
RIF1-206ENST00000453091 KRTAP1-4P0C5Y4 121 aa4.16□□□□□ -1.74
RIF1-206ENST00000453091 KRTAP16-1A8MUX0 517 aa4.15□□□□□ -1.74
RIF1-206ENST00000453091 CRYBG3Q68DQ2 2970 aa4.15□□□□□ -1.74
RIF1-206ENST00000453091 LAMA5O15230 3695 aa4.15□□□□□ -1.74
RIF1-206ENST00000453091 SETXQ7Z333 2677 aaKnown RBP4.15□□□□□ -1.75
RIF1-206ENST00000453091 BAHCC1Q9P281 2608 aa4.14□□□□□ -1.75
RIF1-206ENST00000453091 STAB1Q9NY15 2570 aa4.14□□□□□ -1.75
RIF1-206ENST00000453091 COL6A5A8TX70 2615 aa4.13□□□□□ -1.75
RIF1-206ENST00000453091 NOTCH1P46531 2555 aa4.13□□□□□ -1.75
RIF1-206ENST00000453091 C20orf166-AS1Q96NR2 134 aa4.13□□□□□ -1.75
RIF1-206ENST00000453091 HIVEP1P15822 2718 aa4.12□□□□□ -1.75
RIF1-206ENST00000453091 FBN2P35556 2912 aa4.12□□□□□ -1.75
RIF1-206ENST00000453091 UTP20O75691 2785 aaKnown RBP4.11□□□□□ -1.75
RIF1-206ENST00000453091 PLAC4Q8WY50 150 aa4.11□□□□□ -1.75
RIF1-206ENST00000453091 SMG1Q96Q15 3661 aaKnown RBP4.1□□□□□ -1.75
RIF1-206ENST00000453091 RPS29P62273 56 aaKnown RBP4.09□□□□□ -1.75
RIF1-206ENST00000453091 NBEAL1Q6ZS30 2694 aa4.07□□□□□ -1.76
RIF1-206ENST00000453091 MUC3AQ02505 3323 aa4.06□□□□□ -1.76
RIF1-206ENST00000453091 P0C880 135 aa4.05□□□□□ -1.76
RIF1-206ENST00000453091 SVEP1Q4LDE5 3571 aa4.05□□□□□ -1.76
RIF1-206ENST00000453091 HRNRQ86YZ3 2850 aaPredicted RBP4.05□□□□□ -1.76
RIF1-206ENST00000453091 XP32Q5T750 250 aa4.05□□□□□ -1.76
RIF1-206ENST00000453091 ANK3Q12955 4377 aaKnown RBP4.05□□□□□ -1.76
RIF1-206ENST00000453091 FLNCQ14315 2725 aa4.04□□□□□ -1.76
RIF1-206ENST00000453091 STAB2Q8WWQ8 2551 aa4.04□□□□□ -1.76
RIF1-206ENST00000453091 KRTAP10-8P60410 259 aa4.03□□□□□ -1.76
RIF1-206ENST00000453091 NSD1Q96L73 2696 aaPredicted RBP4.01□□□□□ -1.77
RIF1-206ENST00000453091 KRTAP13-3Q3SY46 172 aa4.01□□□□□ -1.77
RIF1-206ENST00000453091 APCP25054 2843 aa3.99□□□□□ -1.77
RIF1-206ENST00000453091 CSMD2Q7Z408 3487 aa3.99□□□□□ -1.77
RIF1-206ENST00000453091 CELSR2Q9HCU4 2923 aa3.98□□□□□ -1.77
RIF1-206ENST00000453091 DMBT1Q9UGM3 2413 aaPredicted RBP3.98□□□□□ -1.77
RIF1-206ENST00000453091 ZANQ9Y493 2812 aa3.98□□□□□ -1.77
RIF1-206ENST00000453091 FLG2Q5D862 2391 aaPredicted RBP3.97□□□□□ -1.77
RIF1-206ENST00000453091 DCHS2Q6V1P9 2916 aa3.97□□□□□ -1.77
RIF1-206ENST00000453091 TNP1P09430 55 aa3.95□□□□□ -1.78
RIF1-206ENST00000453091 KRTAP12-2P59991 146 aa3.94□□□□□ -1.78
RIF1-206ENST00000453091 CUBNO60494 3623 aa3.94□□□□□ -1.78
RIF1-206ENST00000453091 TENM4Q6N022 2769 aa3.94□□□□□ -1.78
RIF1-206ENST00000453091 TENM2Q9NT68 2774 aa3.92□□□□□ -1.78
RIF1-206ENST00000453091 TPRXLQ17RH7 258 aa3.91□□□□□ -1.78
RIF1-206ENST00000453091 KRTAP3-1Q9BYR8 98 aa3.91□□□□□ -1.78
RIF1-206ENST00000453091 ITPR2Q14571 2701 aa3.9□□□□□ -1.79
RIF1-206ENST00000453091 NBPF19A0A087WUL8 3843 aa3.88□□□□□ -1.79
RIF1-206ENST00000453091 KMT2BQ9UMN6 2715 aaPredicted RBP3.87□□□□□ -1.79
RIF1-206ENST00000453091 KRTAP21-3Q3LHN1 58 aa3.86□□□□□ -1.79
RIF1-206ENST00000453091 KRTAP13-4Q3LI77 160 aa3.86□□□□□ -1.79
RIF1-206ENST00000453091 KRTAP10-10P60014 251 aa3.85□□□□□ -1.79
RIF1-206ENST00000453091 CELSR1Q9NYQ6 3014 aa3.84□□□□□ -1.79
RIF1-206ENST00000453091 FBN1P35555 2871 aaKnown RBP3.82□□□□□ -1.8
RIF1-206ENST00000453091 NF1P21359 2839 aa3.81□□□□□ -1.8
RIF1-206ENST00000453091 NIPBLQ6KC79 2804 aaeCLIP3.81□□□□□ -1.81e-8■■□□□ 13.7
RIF1-206ENST00000453091 SPENQ96T58 3664 aaKnown RBP3.8□□□□□ -1.8
RIF1-206ENST00000453091 KRTAP12-1P59990 96 aa3.79□□□□□ -1.8
RIF1-206ENST00000453091 HUWE1Q7Z6Z7 4374 aaKnown RBP3.79□□□□□ -1.8
RIF1-206ENST00000453091 PDZD2O15018 2839 aa3.78□□□□□ -1.8
RIF1-206ENST00000453091 PP632Q6XCG6 107 aa3.76□□□□□ -1.81
RIF1-206ENST00000453091 TENM3Q9P273 2699 aa3.75□□□□□ -1.81
RIF1-206ENST00000453091 KRTAP10-6P60371 365 aaPredicted RBP3.74□□□□□ -1.81
RIF1-206ENST00000453091 KRTAP4-5Q9BYR2 181 aa3.73□□□□□ -1.81
RIF1-206ENST00000453091 BSNQ9UPA5 3926 aa3.72□□□□□ -1.81
RIF1-206ENST00000453091 OTOGQ6ZRI0 2925 aa3.72□□□□□ -1.81
RIF1-206ENST00000453091 MXRA5Q9NR99 2828 aa3.7□□□□□ -1.82
RIF1-206ENST00000453091 TGP01266 2768 aa3.7□□□□□ -1.82
RIF1-206ENST00000453091 ZFHX3Q15911 3703 aa3.67□□□□□ -1.82
RIF1-206ENST00000453091 TENM1Q9UKZ4 2725 aa3.65□□□□□ -1.82
RIF1-206ENST00000453091 KRTAP3-2Q9BYR7 98 aa3.63□□□□□ -1.83
RIF1-206ENST00000453091 KRTAP3-3Q9BYR6 98 aa3.63□□□□□ -1.83
RIF1-206ENST00000453091 TRRAPQ9Y4A5 3859 aa3.61□□□□□ -1.83
RIF1-206ENST00000453091 MT1HL1P0DM35 61 aa3.6□□□□□ -1.83
RIF1-206ENST00000453091 PKD1L1Q8TDX9 2849 aa3.6□□□□□ -1.83
RIF1-206ENST00000453091 KRTAP15-1Q3LI76 137 aa3.6□□□□□ -1.83
RIF1-206ENST00000453091 VWFP04275 2813 aa3.59□□□□□ -1.83
RIF1-206ENST00000453091 DNAH9Q9NYC9 4486 aa3.58□□□□□ -1.84
RIF1-206ENST00000453091 DNAH5Q8TE73 4624 aa3.57□□□□□ -1.84
RIF1-206ENST00000453091 PLECQ15149 4684 aaKnown RBP3.56□□□□□ -1.84
RIF1-206ENST00000453091 VPS13CQ709C8 3753 aa3.55□□□□□ -1.84
RIF1-206ENST00000453091 LORP23490 312 aaPredicted RBP3.55□□□□□ -1.84
RIF1-206ENST00000453091 DNHD1Q96M86 4753 aa3.54□□□□□ -1.84
RIF1-206ENST00000453091 KRTAP10-4P60372 401 aaPredicted RBP3.54□□□□□ -1.84
RIF1-206ENST00000453091 DYNC1H1Q14204 4646 aaKnown RBP3.52□□□□□ -1.85
RIF1-206ENST00000453091 DNAH10Q8IVF4 4471 aa3.52□□□□□ -1.85
RIF1-206ENST00000453091 PRO2289Q9P1D8 64 aa3.49□□□□□ -1.85
RIF1-206ENST00000453091 CSMD3Q7Z407 3707 aa3.49□□□□□ -1.85
RIF1-206ENST00000453091 DNAH11Q96DT5 4516 aa3.49□□□□□ -1.85
RIF1-206ENST00000453091 CRCT1Q9UGL9 99 aa3.48□□□□□ -1.85
RIF1-206ENST00000453091 FAT1Q14517 4588 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms