RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 WFDC13Q8IUB5 93 aa8.14□□□□□ -1.11
USP39-207ENST00000450066 IGHV6-1A0A0B4J1U7 121 aa8.14□□□□□ -1.11
USP39-207ENST00000450066 MMP24-AS1A0A0U1RRL7 71 aa8.14□□□□□ -1.11
USP39-207ENST00000450066 UQCRQO14949 82 aa8.14□□□□□ -1.11
USP39-207ENST00000450066 CASC2Q6XLA1 102 aa8.14□□□□□ -1.11
USP39-207ENST00000450066 CCDC179H3BU77 68 aa8.12□□□□□ -1.11
USP39-207ENST00000450066 OCR1Q9BZK8 76 aa8.12□□□□□ -1.11
USP39-207ENST00000450066 LRP1Q07954 4544 aaKnown RBP8.12□□□□□ -1.11
USP39-207ENST00000450066 C8orf17Q9NRJ1 99 aa8.12□□□□□ -1.11
USP39-207ENST00000450066 TNXBP22105 4242 aa8.1□□□□□ -1.11
USP39-207ENST00000450066 hDV103S1A0JD37 113 aa8.1□□□□□ -1.11
USP39-207ENST00000450066 KRTAP10-8P60410 259 aa8.09□□□□□ -1.11
USP39-207ENST00000450066 FAT3Q8TDW7 4589 aa8.08□□□□□ -1.12
USP39-207ENST00000450066 NOTCH2NLQ7Z3S9 236 aa8.07□□□□□ -1.12
USP39-207ENST00000450066 C8orf87E5RJ46 101 aa8.06□□□□□ -1.12
USP39-207ENST00000450066 MYCBP2O75592 4640 aa8.05□□□□□ -1.12
USP39-207ENST00000450066 TMEM254Q8TBM7 123 aa8.04□□□□□ -1.12
USP39-207ENST00000450066 FLG2Q5D862 2391 aaPredicted RBP8.03□□□□□ -1.12
USP39-207ENST00000450066 LINC00313P59037 77 aa8.02□□□□□ -1.12
USP39-207ENST00000450066 MRPL34Q9BQ48 92 aaKnown RBP8.02□□□□□ -1.13
USP39-207ENST00000450066 C20orf197Q8N268 126 aa8.01□□□□□ -1.13
USP39-207ENST00000450066 C5orf47Q569G3 176 aa7.99□□□□□ -1.13
USP39-207ENST00000450066 BIRC6Q9NR09 4857 aa7.99□□□□□ -1.13
USP39-207ENST00000450066 TP53AIP1Q9HCN2 124 aa7.98□□□□□ -1.13
USP39-207ENST00000450066 MT1HL1P0DM35 61 aa7.97□□□□□ -1.13
USP39-207ENST00000450066 KLKP1Q107X0 134 aa7.97□□□□□ -1.13
USP39-207ENST00000450066 KRTAP4-5Q9BYR2 181 aa7.96□□□□□ -1.14
USP39-207ENST00000450066 NDUFS5O43920 106 aa7.95□□□□□ -1.14
USP39-207ENST00000450066 OXTP01178 125 aa7.94□□□□□ -1.14
USP39-207ENST00000450066 CYSTM1Q9H1C7 97 aa7.94□□□□□ -1.14
USP39-207ENST00000450066 A0A0U1RQV1 116 aa7.94□□□□□ -1.14
USP39-207ENST00000450066 KRTAP16-1A8MUX0 517 aa7.94□□□□□ -1.14
USP39-207ENST00000450066 RETNLBQ9BQ08 111 aa7.94□□□□□ -1.14
USP39-207ENST00000450066 SNURFQ9Y675 71 aa7.94□□□□□ -1.14
USP39-207ENST00000450066 Q8N9P0 234 aaPredicted RBP7.93□□□□□ -1.14
USP39-207ENST00000450066 MP68P56378 58 aa7.92□□□□□ -1.14
USP39-207ENST00000450066 HERC2O95714 4834 aa7.91□□□□□ -1.14
USP39-207ENST00000450066 DMBT1Q9UGM3 2413 aaPredicted RBP7.91□□□□□ -1.14
USP39-207ENST00000450066 TRAV22A0A0B4J277 110 aa7.91□□□□□ -1.14
USP39-207ENST00000450066 H0Y9P7 68 aa7.9□□□□□ -1.14
USP39-207ENST00000450066 ABCA13Q86UQ4 5058 aa7.89□□□□□ -1.15
USP39-207ENST00000450066 H3BPC8 53 aa7.88□□□□□ -1.15
USP39-207ENST00000450066 NDUFC1O43677 76 aa7.88□□□□□ -1.15
USP39-207ENST00000450066 ZCCHC13Q8WW36 166 aaKnown RBP7.88□□□□□ -1.15
USP39-207ENST00000450066 FP248Q71RG6 208 aaPredicted RBP7.87□□□□□ -1.15
USP39-207ENST00000450066 H7BZZ5 65 aa7.86□□□□□ -1.15
USP39-207ENST00000450066 LINC00208Q96KT6 92 aa7.86□□□□□ -1.15
USP39-207ENST00000450066 C9orf92A6NGG3 77 aa7.83□□□□□ -1.16
USP39-207ENST00000450066 KRTAP13-3Q3SY46 172 aa7.83□□□□□ -1.16
USP39-207ENST00000450066 Q5W150 140 aa7.83□□□□□ -1.16
USP39-207ENST00000450066 C1orf64Q8NEQ6 169 aa7.83□□□□□ -1.16
USP39-207ENST00000450066 TMEM258P61165 79 aa7.83□□□□□ -1.16
USP39-207ENST00000450066 C20orf166-AS1Q96NR2 134 aa7.79□□□□□ -1.16
USP39-207ENST00000450066 IGLV7-46A0A075B6I9 117 aa7.78□□□□□ -1.16
USP39-207ENST00000450066 A8MUU9 505 aa7.78□□□□□ -1.16
USP39-207ENST00000450066 LOC101927531A0A1B0GV80 90 aa7.76□□□□□ -1.17
USP39-207ENST00000450066 FAM236DA0A1B0GTK5 79 aa7.73□□□□□ -1.17
USP39-207ENST00000450066 FAM236CP0DP71 79 aa7.73□□□□□ -1.17
USP39-207ENST00000450066 J3QL48 77 aa7.72□□□□□ -1.17
USP39-207ENST00000450066 PRR4Q16378 134 aa7.72□□□□□ -1.17
USP39-207ENST00000450066 Q75L30 129 aa7.72□□□□□ -1.17
USP39-207ENST00000450066 ATP5EP56381 51 aaPredicted RBP7.71□□□□□ -1.18
USP39-207ENST00000450066 CYP4F30PQ9H0H9 118 aa7.71□□□□□ -1.18
USP39-207ENST00000450066 IGKV2-30P06310 120 aa7.69□□□□□ -1.18
USP39-207ENST00000450066 PCOTHQ58A44 107 aa7.68□□□□□ -1.18
USP39-207ENST00000450066 SPANXA2-OT1Q8N9U9 137 aa7.67□□□□□ -1.18
USP39-207ENST00000450066 XP32Q5T750 250 aa7.66□□□□□ -1.18
USP39-207ENST00000450066 TPRXLQ17RH7 258 aa7.64□□□□□ -1.19
USP39-207ENST00000450066 PCLOQ9Y6V0 5065 aa7.64□□□□□ -1.19
USP39-207ENST00000450066 IGKV2D-30A0A075B6S6 120 aa7.63□□□□□ -1.19
USP39-207ENST00000450066 RPL37P61927 97 aaKnown RBP7.63□□□□□ -1.19
USP39-207ENST00000450066 C7orf65Q6ZTY9 151 aa7.61□□□□□ -1.19
USP39-207ENST00000450066 ATP11AUNQ6ZP68 121 aa7.6□□□□□ -1.19
USP39-207ENST00000450066 RPS28P62857 69 aaKnown RBP7.59□□□□□ -1.19
USP39-207ENST00000450066 SERP1Q9Y6X1 66 aa7.58□□□□□ -1.2
USP39-207ENST00000450066 HRES1P13985 223 aa7.58□□□□□ -1.2
USP39-207ENST00000450066 SPINK7P58062 85 aa7.53□□□□□ -1.2
USP39-207ENST00000450066 LPAP08519 4548 aa7.53□□□□□ -1.2
USP39-207ENST00000450066 LRP2P98164 4655 aa7.51□□□□□ -1.21
USP39-207ENST00000450066 DMAC1Q96GE9 116 aa7.48□□□□□ -1.21
USP39-207ENST00000450066 HERC1Q15751 4861 aa7.47□□□□□ -1.21
USP39-207ENST00000450066 ACYP2P14621 99 aa7.43□□□□□ -1.22
USP39-207ENST00000450066 C4orf26Q17RF5 130 aa7.43□□□□□ -1.22
USP39-207ENST00000450066 COA5Q86WW8 74 aa7.43□□□□□ -1.22
USP39-207ENST00000450066 A8MUN3 132 aa7.39□□□□□ -1.23
USP39-207ENST00000450066 SMIM26A0A096LP01 95 aa7.39□□□□□ -1.23
USP39-207ENST00000450066 SEC61BP60468 96 aaKnown RBP7.38□□□□□ -1.23
USP39-207ENST00000450066 HMCN2Q8NDA2 5059 aa7.37□□□□□ -1.23
USP39-207ENST00000450066 COX6B2Q6YFQ2 88 aa7.34□□□□□ -1.23
USP39-207ENST00000450066 KRTAP3-1Q9BYR8 98 aa7.34□□□□□ -1.23
USP39-207ENST00000450066 CHKB-CPT1BH3BT56 60 aa7.31□□□□□ -1.24
USP39-207ENST00000450066 MUC17Q685J3 4493 aa7.27□□□□□ -1.25
USP39-207ENST00000450066 MPLKIPQ8TAP9 179 aa7.26□□□□□ -1.25
USP39-207ENST00000450066 Q1T7F1 81 aa7.25□□□□□ -1.25
USP39-207ENST00000450066 V9GYY9 64 aa7.22□□□□□ -1.25
USP39-207ENST00000450066 RBM12B-AS1Q9P1G2 102 aa7.21□□□□□ -1.25
USP39-207ENST00000450066 KRTAP4-1Q9BYQ7 146 aa7.2□□□□□ -1.26
USP39-207ENST00000450066 SPTSSBQ8NFR3 76 aa7.16□□□□□ -1.26
USP39-207ENST00000450066 H1FX-AS1Q4G0G2 97 aa7.16□□□□□ -1.26
USP39-207ENST00000450066 LINC01558Q9Y6Z2 57 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms