RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	MRPL34	Q9BQ48	92 aa	Known RBP	9.98	□□□□□ -0.81
TOM1-210	ENST00000449058		A0A087X002	238 aa		9.97	□□□□□ -0.81
TOM1-210	ENST00000449058	NOTCH2NL	Q7Z3S9	236 aa		9.97	□□□□□ -0.81
TOM1-210	ENST00000449058	DNAH6	Q9C0G6	4158 aa		9.97	□□□□□ -0.81
TOM1-210	ENST00000449058	IGLV7-46	A0A075B6I9	117 aa		9.96	□□□□□ -0.82
TOM1-210	ENST00000449058	CIRBP-AS1	Q8TBR5	109 aa		9.96	□□□□□ -0.82
TOM1-210	ENST00000449058	KRTAP10-2	P60368	255 aa		9.95	□□□□□ -0.82
TOM1-210	ENST00000449058	NDUFS5	O43920	106 aa		9.94	□□□□□ -0.82
TOM1-210	ENST00000449058	SSBP3-AS1	Q7Z2R9	100 aa		9.93	□□□□□ -0.82
TOM1-210	ENST00000449058	C4orf48	Q5BLP8	95 aa		9.91	□□□□□ -0.82
TOM1-210	ENST00000449058	ALMS1	Q8TCU4	4167 aa		9.91	□□□□□ -0.82
TOM1-210	ENST00000449058	PCOTH	Q58A44	107 aa		9.9	□□□□□ -0.82
TOM1-210	ENST00000449058	DNAH5	Q8TE73	4624 aa		9.9	□□□□□ -0.82
TOM1-210	ENST00000449058	SPINK6	Q6UWN8	80 aa		9.9	□□□□□ -0.82
TOM1-210	ENST00000449058	DNAH11	Q96DT5	4516 aa		9.89	□□□□□ -0.83
TOM1-210	ENST00000449058		Q6ZSA8	131 aa		9.88	□□□□□ -0.83
TOM1-210	ENST00000449058	PSPHP1	O15172	72 aa		9.87	□□□□□ -0.83
TOM1-210	ENST00000449058	COA5	Q86WW8	74 aa		9.86	□□□□□ -0.83
TOM1-210	ENST00000449058		Q8N9P0	234 aa	Predicted RBP	9.85	□□□□□ -0.83
TOM1-210	ENST00000449058	KRTAP10-1	P60331	282 aa		9.83	□□□□□ -0.84
TOM1-210	ENST00000449058	KRTAP13-3	Q3SY46	172 aa		9.83	□□□□□ -0.84
TOM1-210	ENST00000449058	KRTAP13-2	Q52LG2	175 aa		9.82	□□□□□ -0.84
TOM1-210	ENST00000449058		A8MUN3	132 aa		9.82	□□□□□ -0.84
TOM1-210	ENST00000449058	C8orf87	E5RJ46	101 aa		9.82	□□□□□ -0.84
TOM1-210	ENST00000449058	PKD1	P98161	4303 aa		9.81	□□□□□ -0.84
TOM1-210	ENST00000449058		Q5W150	140 aa		9.81	□□□□□ -0.84
TOM1-210	ENST00000449058	LOC101927531	A0A1B0GV80	90 aa		9.8	□□□□□ -0.84
TOM1-210	ENST00000449058	RBM12B-AS1	Q9P1G2	102 aa		9.8	□□□□□ -0.84
TOM1-210	ENST00000449058	LIMD2	Q9BT23	127 aa		9.8	□□□□□ -0.84
TOM1-210	ENST00000449058		Q5VV11	94 aa		9.78	□□□□□ -0.84
TOM1-210	ENST00000449058	KTN1-AS1	Q86SY8	53 aa		9.76	□□□□□ -0.85
TOM1-210	ENST00000449058	LRP1B	Q9NZR2	4599 aa		9.74	□□□□□ -0.85
TOM1-210	ENST00000449058	KRTAP1-4	P0C5Y4	121 aa		9.74	□□□□□ -0.85
TOM1-210	ENST00000449058	FAT2	Q9NYQ8	4349 aa		9.74	□□□□□ -0.85
TOM1-210	ENST00000449058	LINC00313	P59037	77 aa		9.73	□□□□□ -0.85
TOM1-210	ENST00000449058	HRES1	P13985	223 aa		9.73	□□□□□ -0.85
TOM1-210	ENST00000449058	HYDIN	Q4G0P3	5121 aa		9.73	□□□□□ -0.85
TOM1-210	ENST00000449058	PRR15L	Q9BU68	103 aa		9.71	□□□□□ -0.85
TOM1-210	ENST00000449058	FAM229A	H3BQW9	127 aa		9.66	□□□□□ -0.86
TOM1-210	ENST00000449058		Q75L30	129 aa		9.66	□□□□□ -0.86
TOM1-210	ENST00000449058	KRTAP16-1	A8MUX0	517 aa		9.65	□□□□□ -0.86
TOM1-210	ENST00000449058	CHKB-CPT1B	H3BT56	60 aa		9.65	□□□□□ -0.86
TOM1-210	ENST00000449058	LINC01558	Q9Y6Z2	57 aa		9.65	□□□□□ -0.87
TOM1-210	ENST00000449058	SPAG11A	Q6PDA7	123 aa		9.63	□□□□□ -0.87
TOM1-210	ENST00000449058	VPS13B	Q7Z7G8	4022 aa		9.6	□□□□□ -0.87
TOM1-210	ENST00000449058	PLA2G1B	P04054	148 aa	Known RBP	9.6	□□□□□ -0.87
TOM1-210	ENST00000449058		A8MU10	97 aa		9.59	□□□□□ -0.87
TOM1-210	ENST00000449058	IGKV2-30	P06310	120 aa		9.59	□□□□□ -0.87
TOM1-210	ENST00000449058	ACYP2	P14621	99 aa		9.57	□□□□□ -0.88
TOM1-210	ENST00000449058	DMAC1	Q96GE9	116 aa		9.57	□□□□□ -0.88
TOM1-210	ENST00000449058	RETNLB	Q9BQ08	111 aa		9.57	□□□□□ -0.88
TOM1-210	ENST00000449058	TYMSOS	Q8TAI1	123 aa		9.57	□□□□□ -0.88
TOM1-210	ENST00000449058	SPTSSB	Q8NFR3	76 aa		9.56	□□□□□ -0.88
TOM1-210	ENST00000449058	SPINK1	P00995	79 aa		9.55	□□□□□ -0.88
TOM1-210	ENST00000449058		H3BS24	57 aa		9.55	□□□□□ -0.88
TOM1-210	ENST00000449058	PRR26	Q8N8Z3	221 aa		9.54	□□□□□ -0.88
TOM1-210	ENST00000449058		A6NED7	52 aa		9.52	□□□□□ -0.88
TOM1-210	ENST00000449058	ATP11AUN	Q6ZP68	121 aa		9.52	□□□□□ -0.89
TOM1-210	ENST00000449058	LCA10	Q71F78	164 aa		9.52	□□□□□ -0.89
TOM1-210	ENST00000449058	RPS29	P62273	56 aa	Known RBP	9.46	□□□□□ -0.89
TOM1-210	ENST00000449058	C7orf65	Q6ZTY9	151 aa		9.46	□□□□□ -0.9
TOM1-210	ENST00000449058		A6NN06	94 aa		9.45	□□□□□ -0.9
TOM1-210	ENST00000449058	CDC42SE1	Q9NRR8	79 aa		9.45	□□□□□ -0.9
TOM1-210	ENST00000449058	LINC00304	Q8N9R0	145 aa		9.45	□□□□□ -0.9
TOM1-210	ENST00000449058	PKHD1	P08F94	4074 aa		9.44	□□□□□ -0.9
TOM1-210	ENST00000449058	SACS	Q9NZJ4	4579 aa		9.43	□□□□□ -0.9
TOM1-210	ENST00000449058	IGKV2D-30	A0A075B6S6	120 aa		9.42	□□□□□ -0.9
TOM1-210	ENST00000449058	SPINK7	P58062	85 aa		9.42	□□□□□ -0.9
TOM1-210	ENST00000449058	DYNC1H1	Q14204	4646 aa	Known RBP	9.37	□□□□□ -0.91
TOM1-210	ENST00000449058		A0A1B0GVY2	172 aa		9.36	□□□□□ -0.91
TOM1-210	ENST00000449058	SMR3B	P02814	79 aa	Predicted RBP	9.36	□□□□□ -0.91
TOM1-210	ENST00000449058	KRTAP10-4	P60372	401 aa	Predicted RBP	9.34	□□□□□ -0.91
TOM1-210	ENST00000449058		A0A1B0GU69	56 aa		9.28	□□□□□ -0.92
TOM1-210	ENST00000449058	PKHD1L1	Q86WI1	4243 aa		9.26	□□□□□ -0.93
TOM1-210	ENST00000449058	APOB	P04114	4563 aa	Known RBP	9.26	□□□□□ -0.93
TOM1-210	ENST00000449058		A8MUU9	505 aa		9.24	□□□□□ -0.93
TOM1-210	ENST00000449058	C20orf166-AS1	Q96NR2	134 aa		9.24	□□□□□ -0.93
TOM1-210	ENST00000449058	FAT1	Q14517	4588 aa		9.21	□□□□□ -0.94
TOM1-210	ENST00000449058	C9orf92	A6NGG3	77 aa		9.21	□□□□□ -0.94
TOM1-210	ENST00000449058	KMT2C	Q8NEZ4	4911 aa	Known RBP	9.2	□□□□□ -0.94
TOM1-210	ENST00000449058		Q8N1X5	172 aa		9.2	□□□□□ -0.94
TOM1-210	ENST00000449058	RYR2	Q92736	4967 aa		9.19	□□□□□ -0.94
TOM1-210	ENST00000449058	LINC01554	Q52M75	96 aa		9.19	□□□□□ -0.94
TOM1-210	ENST00000449058	SPATA8	Q6RVD6	105 aa		9.15	□□□□□ -0.94
TOM1-210	ENST00000449058	UQCR11	O14957	56 aa		9.11	□□□□□ -0.95
TOM1-210	ENST00000449058	PRAC1	Q96KF2	57 aa		9.1	□□□□□ -0.95
TOM1-210	ENST00000449058	MIR22HG	Q0VDD5	57 aa		9.08	□□□□□ -0.96
TOM1-210	ENST00000449058	KRTAP3-1	Q9BYR8	98 aa		9.06	□□□□□ -0.96
TOM1-210	ENST00000449058	FLG2	Q5D862	2391 aa	Predicted RBP	9.05	□□□□□ -0.96
TOM1-210	ENST00000449058	RYR3	Q15413	4870 aa		8.97	□□□□□ -0.97
TOM1-210	ENST00000449058	KRTAP10-8	P60410	259 aa		8.97	□□□□□ -0.97
TOM1-210	ENST00000449058	ADM2	Q7Z4H4	148 aa		8.97	□□□□□ -0.97
TOM1-210	ENST00000449058	FAT3	Q8TDW7	4589 aa		8.94	□□□□□ -0.98
TOM1-210	ENST00000449058	TNXB	P22105	4242 aa		8.92	□□□□□ -0.98
TOM1-210	ENST00000449058	COX6B2	Q6YFQ2	88 aa		8.92	□□□□□ -0.98
TOM1-210	ENST00000449058		Q5VSD8	79 aa		8.9	□□□□□ -0.99
TOM1-210	ENST00000449058	LRP1	Q07954	4544 aa	Known RBP	8.88	□□□□□ -0.99
TOM1-210	ENST00000449058	HSPG2	P98160	4391 aa		8.85	□□□□□ -0.99
TOM1-210	ENST00000449058		H0YAA0	97 aa		8.83	□□□□□ -1
TOM1-210	ENST00000449058	RPL37	P61927	97 aa	Known RBP	8.82	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms