RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 INE1O15225 51 aa4.78□□□□□ -1.64
NIPBL-202ENST00000448238 PRUNE2Q8WUY3 3088 aa4.76□□□□□ -1.65
NIPBL-202ENST00000448238 DMXL2Q8TDJ6 3036 aa4.73□□□□□ -1.65
NIPBL-202ENST00000448238 KRTAP10-10P60014 251 aa4.73□□□□□ -1.65
NIPBL-202ENST00000448238 KRTAP13-2Q52LG2 175 aa4.72□□□□□ -1.65
NIPBL-202ENST00000448238 TENM2Q9NT68 2774 aa4.71□□□□□ -1.65
NIPBL-202ENST00000448238 MGAQ8IWI9 3026 aa4.7□□□□□ -1.66
NIPBL-202ENST00000448238 TNRC18O15417 2968 aaPredicted RBP4.69□□□□□ -1.66
NIPBL-202ENST00000448238 KRTAP13-1Q8IUC0 172 aa4.69□□□□□ -1.66
NIPBL-202ENST00000448238 REV3LO60673 3130 aa4.67□□□□□ -1.66
NIPBL-202ENST00000448238 KRTAP12-2P59991 146 aa4.66□□□□□ -1.66
NIPBL-202ENST00000448238 WDFY4Q6ZS81 3184 aa4.64□□□□□ -1.67
NIPBL-202ENST00000448238 LAMA1P25391 3075 aa4.64□□□□□ -1.67
NIPBL-202ENST00000448238 TPRXLQ17RH7 258 aa4.63□□□□□ -1.67
NIPBL-202ENST00000448238 KRTAP13-4Q3LI77 160 aa4.63□□□□□ -1.67
NIPBL-202ENST00000448238 XP32Q5T750 250 aa4.61□□□□□ -1.67
NIPBL-202ENST00000448238 A0A1B0GVY2 172 aa4.6□□□□□ -1.67
NIPBL-202ENST00000448238 TENM4Q6N022 2769 aa4.57□□□□□ -1.68
NIPBL-202ENST00000448238 ATMQ13315 3056 aa4.57□□□□□ -1.68
NIPBL-202ENST00000448238 KRTAP15-1Q3LI76 137 aa4.55□□□□□ -1.68
NIPBL-202ENST00000448238 CELSR1Q9NYQ6 3014 aa4.54□□□□□ -1.68
NIPBL-202ENST00000448238 VPS13AQ96RL7 3174 aa4.54□□□□□ -1.68
NIPBL-202ENST00000448238 UNC80Q8N2C7 3258 aa4.54□□□□□ -1.68
NIPBL-202ENST00000448238 DCHS2Q6V1P9 2916 aa4.54□□□□□ -1.68
NIPBL-202ENST00000448238 NBEAQ8NFP9 2946 aa4.54□□□□□ -1.68
NIPBL-202ENST00000448238 ADGRG4Q8IZF6 3080 aa4.53□□□□□ -1.68
NIPBL-202ENST00000448238 UTRNP46939 3433 aa4.53□□□□□ -1.68
NIPBL-202ENST00000448238 ZANQ9Y493 2812 aa4.51□□□□□ -1.69
NIPBL-202ENST00000448238 VWFP04275 2813 aa4.5□□□□□ -1.69
NIPBL-202ENST00000448238 KRTAP7-1Q8IUC3 87 aa4.5□□□□□ -1.69
NIPBL-202ENST00000448238 PKD1L1Q8TDX9 2849 aa4.5□□□□□ -1.69
NIPBL-202ENST00000448238 ZZEF1O43149 2961 aa4.48□□□□□ -1.69
NIPBL-202ENST00000448238 TACC2O95359 2948 aa4.46□□□□□ -1.69
NIPBL-202ENST00000448238 DMXL1Q9Y485 3027 aa4.45□□□□□ -1.7
NIPBL-202ENST00000448238 HTTP42858 3142 aa4.44□□□□□ -1.7
NIPBL-202ENST00000448238 COL7A1Q02388 2944 aa4.43□□□□□ -1.7
NIPBL-202ENST00000448238 RANBP2P49792 3224 aaKnown RBP4.41□□□□□ -1.7
NIPBL-202ENST00000448238 KRTAP23-1A1A580 65 aa4.38□□□□□ -1.71
NIPBL-202ENST00000448238 KRTAP12-1P59990 96 aa4.38□□□□□ -1.71
NIPBL-202ENST00000448238 KRTAP13-3Q3SY46 172 aa4.38□□□□□ -1.71
NIPBL-202ENST00000448238 BOD1L1Q8NFC6 3051 aa4.37□□□□□ -1.71
NIPBL-202ENST00000448238 XIRP2A4UGR9 3374 aa4.37□□□□□ -1.71
NIPBL-202ENST00000448238 KRTAP1-4P0C5Y4 121 aa4.37□□□□□ -1.71
NIPBL-202ENST00000448238 OTOGQ6ZRI0 2925 aa4.32□□□□□ -1.72
NIPBL-202ENST00000448238 MEGF8Q7Z7M0 2845 aa4.29□□□□□ -1.72
NIPBL-202ENST00000448238 CELSR3Q9NYQ7 3312 aa4.29□□□□□ -1.72
NIPBL-202ENST00000448238 KRTAP21-3Q3LHN1 58 aa4.28□□□□□ -1.72
NIPBL-202ENST00000448238 MXRA5Q9NR99 2828 aa4.28□□□□□ -1.72
NIPBL-202ENST00000448238 FBN2P35556 2912 aa4.22□□□□□ -1.73
NIPBL-202ENST00000448238 MKI67P46013 3256 aaKnown RBP4.21□□□□□ -1.74
NIPBL-202ENST00000448238 SZT2Q5T011 3432 aa4.18□□□□□ -1.74
NIPBL-202ENST00000448238 COL6A3P12111 3177 aa4.18□□□□□ -1.74
NIPBL-202ENST00000448238 ZFHX4Q86UP3 3567 aa4.18□□□□□ -1.74
NIPBL-202ENST00000448238 DNAH14Q0VDD8 3507 aa4.17□□□□□ -1.74
NIPBL-202ENST00000448238 KRTAP10-12P60413 245 aa4.16□□□□□ -1.74
NIPBL-202ENST00000448238 CFAP47Q6ZTR5 3102 aa4.16□□□□□ -1.74
NIPBL-202ENST00000448238 SPEGQ15772 3267 aa4.15□□□□□ -1.75
NIPBL-202ENST00000448238 FBN3Q75N90 2809 aa4.14□□□□□ -1.75
NIPBL-202ENST00000448238 KRTAP10-6P60371 365 aaPredicted RBP4.14□□□□□ -1.75
NIPBL-202ENST00000448238 VCANP13611 3396 aa4.13□□□□□ -1.75
NIPBL-202ENST00000448238 CRCT1Q9UGL9 99 aa4.13□□□□□ -1.75
NIPBL-202ENST00000448238 HRNRQ86YZ3 2850 aaPredicted RBP4.12□□□□□ -1.75
NIPBL-202ENST00000448238 KRTAP12-3P60328 96 aa4.05□□□□□ -1.76
NIPBL-202ENST00000448238 CDH23Q9H251 3354 aa4.03□□□□□ -1.77
NIPBL-202ENST00000448238 LAMA3Q16787 3333 aa4.02□□□□□ -1.77
NIPBL-202ENST00000448238 KRTAP10-5P60370 271 aa4.02□□□□□ -1.77
NIPBL-202ENST00000448238 USP34Q70CQ2 3546 aa4□□□□□ -1.77
NIPBL-202ENST00000448238 BRCA2P51587 3418 aa4□□□□□ -1.77
NIPBL-202ENST00000448238 KRTAP3-1Q9BYR8 98 aa3.93□□□□□ -1.78
NIPBL-202ENST00000448238 LOC400499M0QZD8 3231 aa3.88□□□□□ -1.79
NIPBL-202ENST00000448238 EYSQ5T1H1 3165 aa3.85□□□□□ -1.79
NIPBL-202ENST00000448238 SPTBN5Q9NRC6 3674 aaKnown RBP3.81□□□□□ -1.8
NIPBL-202ENST00000448238 MYO15AQ9UKN7 3530 aa3.81□□□□□ -1.8
NIPBL-202ENST00000448238 ZFHX3Q15911 3703 aa3.8□□□□□ -1.8
NIPBL-202ENST00000448238 LCE3AQ5TA76 89 aa3.8□□□□□ -1.8
NIPBL-202ENST00000448238 ASPMQ8IZT6 3477 aa3.79□□□□□ -1.8
NIPBL-202ENST00000448238 KRTAP10-7P60409 375 aaPredicted RBP3.78□□□□□ -1.8
NIPBL-202ENST00000448238 FBN1P35555 2871 aaKnown RBP3.76□□□□□ -1.81
NIPBL-202ENST00000448238 KRTAP8-1Q8IUC2 63 aa3.76□□□□□ -1.81
NIPBL-202ENST00000448238 WDFY3Q8IZQ1 3526 aa3.75□□□□□ -1.81
NIPBL-202ENST00000448238 KRTAP3-2Q9BYR7 98 aa3.74□□□□□ -1.81
NIPBL-202ENST00000448238 NBPF19A0A087WUL8 3843 aa3.71□□□□□ -1.82
NIPBL-202ENST00000448238 KRTAP3-3Q9BYR6 98 aa3.68□□□□□ -1.82
NIPBL-202ENST00000448238 KRTAP19-4Q3LI73 84 aa3.67□□□□□ -1.82
NIPBL-202ENST00000448238 DCHS1Q96JQ0 3298 aa3.66□□□□□ -1.82
NIPBL-202ENST00000448238 MT3P25713 68 aa3.64□□□□□ -1.83
NIPBL-202ENST00000448238 LAMA5O15230 3695 aa3.6□□□□□ -1.83
NIPBL-202ENST00000448238 CUBNO60494 3623 aa3.59□□□□□ -1.83
NIPBL-202ENST00000448238 SPENQ96T58 3664 aaKnown RBP3.59□□□□□ -1.84
NIPBL-202ENST00000448238 RELNP78509 3460 aa3.58□□□□□ -1.84
NIPBL-202ENST00000448238 KRTAP10-4P60372 401 aaPredicted RBP3.57□□□□□ -1.84
NIPBL-202ENST00000448238 SMG1Q96Q15 3661 aaKnown RBP3.57□□□□□ -1.84
NIPBL-202ENST00000448238 CSMD1Q96PZ7 3565 aa3.49□□□□□ -1.85
NIPBL-202ENST00000448238 LORP23490 312 aaPredicted RBP3.47□□□□□ -1.85
NIPBL-202ENST00000448238 LCE3CQ5T5A8 94 aa3.45□□□□□ -1.86
NIPBL-202ENST00000448238 DMDP11532 3685 aa3.44□□□□□ -1.86
NIPBL-202ENST00000448238 MT1HL1P0DM35 61 aa3.43□□□□□ -1.86
NIPBL-202ENST00000448238 SPRR2FQ96RM1 72 aa3.37□□□□□ -1.87
NIPBL-202ENST00000448238 TRRAPQ9Y4A5 3859 aa3.36□□□□□ -1.87
NIPBL-202ENST00000448238 KRTAP12-4P60329 112 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms