RNA–Protein interactions for RNA: ENST00000445497.1

UBBP3-201, Transcript of ubiquitin B pseudogene 3, humanhuman

BASIC

Gene UBBP3, Length 241 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP3-201ENST00000445497 LRRK2Q5S007 2527 aa0.8□□□□□ -2.28
UBBP3-201ENST00000445497 USP24Q9UPU5 2620 aa0.8□□□□□ -2.28
UBBP3-201ENST00000445497 MTORP42345 2549 aa0.8□□□□□ -2.28
UBBP3-201ENST00000445497 BDP1A6H8Y1 2624 aa0.8□□□□□ -2.28
UBBP3-201ENST00000445497 VWFP04275 2813 aa0.79□□□□□ -2.28
UBBP3-201ENST00000445497 NOTCH2Q04721 2471 aa0.78□□□□□ -2.28
UBBP3-201ENST00000445497 PTPN13Q12923 2485 aa0.78□□□□□ -2.28
UBBP3-201ENST00000445497 CSMD3Q7Z407 3707 aa0.78□□□□□ -2.28
UBBP3-201ENST00000445497 OTOGQ6ZRI0 2925 aa0.78□□□□□ -2.28
UBBP3-201ENST00000445497 ANKHD1Q8IWZ3 2542 aaKnown RBP0.78□□□□□ -2.28
UBBP3-201ENST00000445497 ACANP16112 2415 aa0.77□□□□□ -2.29
UBBP3-201ENST00000445497 MGAQ8IWI9 3026 aa0.77□□□□□ -2.29
UBBP3-201ENST00000445497 CHD9Q3L8U1 2897 aa0.76□□□□□ -2.29
UBBP3-201ENST00000445497 CACNA1AO00555 2505 aa0.76□□□□□ -2.29
UBBP3-201ENST00000445497 PRM1P04553 51 aa0.76□□□□□ -2.29
UBBP3-201ENST00000445497 LCE3AQ5TA76 89 aa0.76□□□□□ -2.29
UBBP3-201ENST00000445497 HELZ2Q9BYK8 2649 aaKnown RBP0.75□□□□□ -2.29
UBBP3-201ENST00000445497 SONP18583 2426 aaKnown RBP0.75□□□□□ -2.29
UBBP3-201ENST00000445497 HTN3P15516 51 aa0.75□□□□□ -2.29
UBBP3-201ENST00000445497 VPS13DQ5THJ4 4388 aa0.75□□□□□ -2.29
UBBP3-201ENST00000445497 USP9YO00507 2555 aaPredicted RBP0.74□□□□□ -2.29
UBBP3-201ENST00000445497 CRYBG3Q68DQ2 2970 aa0.74□□□□□ -2.29
UBBP3-201ENST00000445497 FLNCQ14315 2725 aa0.74□□□□□ -2.29
UBBP3-201ENST00000445497 TNRC18O15417 2968 aaPredicted RBP0.74□□□□□ -2.29
UBBP3-201ENST00000445497 MT1AP04731 61 aa0.73□□□□□ -2.29
UBBP3-201ENST00000445497 CELSR1Q9NYQ6 3014 aa0.73□□□□□ -2.29
UBBP3-201ENST00000445497 NSD1Q96L73 2696 aaPredicted RBP0.72□□□□□ -2.29
UBBP3-201ENST00000445497 SMR3BP02814 79 aaPredicted RBP0.72□□□□□ -2.29
UBBP3-201ENST00000445497 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.72□□□□□ -2.29
UBBP3-201ENST00000445497 DNAH11Q96DT5 4516 aa0.72□□□□□ -2.29
UBBP3-201ENST00000445497 APCP25054 2843 aa0.71□□□□□ -2.3
UBBP3-201ENST00000445497 STAB1Q9NY15 2570 aa0.71□□□□□ -2.3
UBBP3-201ENST00000445497 MYCBP2O75592 4640 aa0.71□□□□□ -2.3
UBBP3-201ENST00000445497 UTP20O75691 2785 aaKnown RBP0.71□□□□□ -2.3
UBBP3-201ENST00000445497 ITPR3Q14573 2671 aa0.7□□□□□ -2.3
UBBP3-201ENST00000445497 SPRR2BP35325 72 aa0.7□□□□□ -2.3
UBBP3-201ENST00000445497 SPG11Q96JI7 2443 aa0.7□□□□□ -2.3
UBBP3-201ENST00000445497 ZFYVE26Q68DK2 2539 aa0.7□□□□□ -2.3
UBBP3-201ENST00000445497 WDR87Q6ZQQ6 2873 aa0.7□□□□□ -2.3
UBBP3-201ENST00000445497 GCN1Q92616 2671 aaKnown RBP0.7□□□□□ -2.3
UBBP3-201ENST00000445497 ACACBO00763 2458 aa0.7□□□□□ -2.3
UBBP3-201ENST00000445497 TNXBP22105 4242 aa0.69□□□□□ -2.3
UBBP3-201ENST00000445497 SPRR2DP22532 72 aa0.69□□□□□ -2.3
UBBP3-201ENST00000445497 KRTAP19-3Q7Z4W3 81 aa0.69□□□□□ -2.3
UBBP3-201ENST00000445497 SETXQ7Z333 2677 aaKnown RBP0.68□□□□□ -2.3
UBBP3-201ENST00000445497 SPRR2AP35326 72 aa0.68□□□□□ -2.3
UBBP3-201ENST00000445497 ITPR1Q14643 2758 aa0.68□□□□□ -2.3
UBBP3-201ENST00000445497 LCE1CQ5T751 118 aa0.68□□□□□ -2.3
UBBP3-201ENST00000445497 LCE1BQ5T7P3 118 aa0.68□□□□□ -2.3
UBBP3-201ENST00000445497 ZFHX4Q86UP3 3567 aa0.68□□□□□ -2.3
UBBP3-201ENST00000445497 NF1P21359 2839 aa0.68□□□□□ -2.3
UBBP3-201ENST00000445497 SACSQ9NZJ4 4579 aa0.67□□□□□ -2.3
UBBP3-201ENST00000445497 DEFB4AO15263 64 aa0.67□□□□□ -2.3
UBBP3-201ENST00000445497 KRTAP19-5Q3LI72 72 aa0.67□□□□□ -2.3
UBBP3-201ENST00000445497 KRTAP5-5Q701N2 237 aaPredicted RBP0.67□□□□□ -2.3
UBBP3-201ENST00000445497 COL12A1Q99715 3063 aa0.66□□□□□ -2.3
UBBP3-201ENST00000445497 KMT2AQ03164 3969 aa0.66□□□□□ -2.3
UBBP3-201ENST00000445497 KRTAP5-1Q6L8H4 278 aa0.66□□□□□ -2.3
UBBP3-201ENST00000445497 CFAP46Q8IYW2 2715 aa0.66□□□□□ -2.3
UBBP3-201ENST00000445497 FBN2P35556 2912 aa0.66□□□□□ -2.3
UBBP3-201ENST00000445497 COL7A1Q02388 2944 aa0.66□□□□□ -2.3
UBBP3-201ENST00000445497 DOPEY1Q5JWR5 2465 aa0.65□□□□□ -2.3
UBBP3-201ENST00000445497 BSNQ9UPA5 3926 aa0.65□□□□□ -2.3
UBBP3-201ENST00000445497 MAP1AP78559 2803 aaPredicted RBP0.65□□□□□ -2.31
UBBP3-201ENST00000445497 NIPBLQ6KC79 2804 aaeCLIP0.65□□□□□ -2.31
UBBP3-201ENST00000445497 FRYLO94915 3013 aa0.65□□□□□ -2.31
UBBP3-201ENST00000445497 TEX15Q9BXT5 2789 aa0.65□□□□□ -2.31
UBBP3-201ENST00000445497 NBPF19A0A087WUL8 3843 aa0.65□□□□□ -2.31
UBBP3-201ENST00000445497 AKAP9Q99996 3911 aa0.65□□□□□ -2.31
UBBP3-201ENST00000445497 TLN2Q9Y4G6 2542 aa0.65□□□□□ -2.31
UBBP3-201ENST00000445497 FLNBO75369 2602 aaKnown RBP0.65□□□□□ -2.31
UBBP3-201ENST00000445497 MYO18BQ8IUG5 2567 aa0.64□□□□□ -2.31
UBBP3-201ENST00000445497 ANKRD11Q6UB99 2663 aaPredicted RBP0.64□□□□□ -2.31
UBBP3-201ENST00000445497 TGP01266 2768 aa0.64□□□□□ -2.31
UBBP3-201ENST00000445497 UNC79Q9P2D8 2635 aa0.64□□□□□ -2.31
UBBP3-201ENST00000445497 FRYQ5TBA9 3013 aa0.64□□□□□ -2.31
UBBP3-201ENST00000445497 VPS13BQ7Z7G8 4022 aa0.64□□□□□ -2.31
UBBP3-201ENST00000445497 NOTCH1P46531 2555 aa0.64□□□□□ -2.31
UBBP3-201ENST00000445497 DYNC2H1Q8NCM8 4307 aaKnown RBP0.64□□□□□ -2.31
UBBP3-201ENST00000445497 USP9XQ93008 2570 aaPredicted RBP0.63□□□□□ -2.31
UBBP3-201ENST00000445497 PRKDCP78527 4128 aaKnown RBP0.63□□□□□ -2.31
UBBP3-201ENST00000445497 RANBP2P49792 3224 aaKnown RBP0.63□□□□□ -2.31
UBBP3-201ENST00000445497 CENPEQ02224 2701 aa0.63□□□□□ -2.31
UBBP3-201ENST00000445497 ANK2Q01484 3957 aa0.63□□□□□ -2.31
UBBP3-201ENST00000445497 LAMA5O15230 3695 aa0.63□□□□□ -2.31
UBBP3-201ENST00000445497 ANK3Q12955 4377 aaKnown RBP0.63□□□□□ -2.31
UBBP3-201ENST00000445497 CELSR3Q9NYQ7 3312 aa0.63□□□□□ -2.31
UBBP3-201ENST00000445497 DNAH3Q8TD57 4116 aa0.62□□□□□ -2.31
UBBP3-201ENST00000445497 FLNAP21333 2647 aaKnown RBP0.62□□□□□ -2.31
UBBP3-201ENST00000445497 FAT2Q9NYQ8 4349 aa0.62□□□□□ -2.31
UBBP3-201ENST00000445497 DCHS2Q6V1P9 2916 aa0.62□□□□□ -2.31
UBBP3-201ENST00000445497 LYSTQ99698 3801 aa0.62□□□□□ -2.31
UBBP3-201ENST00000445497 NBEAL2Q6ZNJ1 2754 aa0.62□□□□□ -2.31
UBBP3-201ENST00000445497 DNAH8Q96JB1 4490 aa0.62□□□□□ -2.31
UBBP3-201ENST00000445497 NBEAL1Q6ZS30 2694 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 SZT2Q5T011 3432 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 FBN3Q75N90 2809 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 CFAP54Q96N23 3096 aa0.61□□□□□ -2.31
UBBP3-201ENST00000445497 FASNP49327 2511 aaKnown RBP0.61□□□□□ -2.31
UBBP3-201ENST00000445497 ZNF469Q96JG9 3925 aaPredicted RBP0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 133.3 ms