RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 KRTAP21-3Q3LHN1 58 aa6.34□□□□□ -1.39
SCN4A-201ENST00000435607 KRTAP4-16G5E9R7 235 aaPredicted RBP6.34□□□□□ -1.4
SCN4A-201ENST00000435607 DCHS1Q96JQ0 3298 aa6.33□□□□□ -1.4
SCN4A-201ENST00000435607 KRTAP29-1A8MX34 341 aaPredicted RBP6.32□□□□□ -1.4
SCN4A-201ENST00000435607 RELNP78509 3460 aa6.31□□□□□ -1.4
SCN4A-201ENST00000435607 KRTAP25-1Q3LHN0 102 aa6.31□□□□□ -1.4
SCN4A-201ENST00000435607 KALRNO60229 2985 aa6.31□□□□□ -1.4
SCN4A-201ENST00000435607 C10orf95Q9H7T3 257 aa6.3□□□□□ -1.4
SCN4A-201ENST00000435607 NOTCH2NLQ7Z3S9 236 aa6.29□□□□□ -1.4
SCN4A-201ENST00000435607 ZNF292O60281 2723 aa6.29□□□□□ -1.4
SCN4A-201ENST00000435607 KRTAP10-8P60410 259 aa6.29□□□□□ -1.4
SCN4A-201ENST00000435607 PRO2289Q9P1D8 64 aa6.28□□□□□ -1.4
SCN4A-201ENST00000435607 ITPR2Q14571 2701 aa6.28□□□□□ -1.4
SCN4A-201ENST00000435607 PP632Q6XCG6 107 aa6.27□□□□□ -1.41
SCN4A-201ENST00000435607 GCN1Q92616 2671 aaKnown RBP6.26□□□□□ -1.41
SCN4A-201ENST00000435607 IGSF10Q6WRI0 2623 aa6.25□□□□□ -1.41
SCN4A-201ENST00000435607 A8MU10 97 aa6.25□□□□□ -1.41
SCN4A-201ENST00000435607 Q6ZRN7 208 aaPredicted RBP6.25□□□□□ -1.41
SCN4A-201ENST00000435607 CYSTM1Q9H1C7 97 aa6.25□□□□□ -1.41
SCN4A-201ENST00000435607 NBEAQ8NFP9 2946 aa6.21□□□□□ -1.42
SCN4A-201ENST00000435607 NSD1Q96L73 2696 aaPredicted RBP6.21□□□□□ -1.42
SCN4A-201ENST00000435607 NBPF19A0A087WUL8 3843 aa6.2□□□□□ -1.42
SCN4A-201ENST00000435607 CRYBG3Q68DQ2 2970 aa6.18□□□□□ -1.42
SCN4A-201ENST00000435607 CSMD1Q96PZ7 3565 aa6.18□□□□□ -1.42
SCN4A-201ENST00000435607 P0C880 135 aa6.18□□□□□ -1.42
SCN4A-201ENST00000435607 KRTAP13-2Q52LG2 175 aa6.18□□□□□ -1.42
SCN4A-201ENST00000435607 ASH1LQ9NR48 2969 aaKnown RBP6.16□□□□□ -1.42
SCN4A-201ENST00000435607 NDUFAF8A1L188 74 aa6.16□□□□□ -1.42
SCN4A-201ENST00000435607 TACC2O95359 2948 aa6.16□□□□□ -1.42
SCN4A-201ENST00000435607 SMG1Q96Q15 3661 aaKnown RBP6.16□□□□□ -1.42
SCN4A-201ENST00000435607 SPENQ96T58 3664 aaKnown RBP6.15□□□□□ -1.43
SCN4A-201ENST00000435607 ZZEF1O43149 2961 aa6.14□□□□□ -1.43
SCN4A-201ENST00000435607 KRTAP10-10P60014 251 aa6.12□□□□□ -1.43
SCN4A-201ENST00000435607 KRTAP11-1Q8IUC1 163 aa6.09□□□□□ -1.43
SCN4A-201ENST00000435607 A0A1B0GVY2 172 aa6.08□□□□□ -1.44
SCN4A-201ENST00000435607 SVEP1Q4LDE5 3571 aa6.07□□□□□ -1.44
SCN4A-201ENST00000435607 KRTAP13-1Q8IUC0 172 aa6.07□□□□□ -1.44
SCN4A-201ENST00000435607 A6NN06 94 aa6.05□□□□□ -1.44
SCN4A-201ENST00000435607 TPRXLQ17RH7 258 aa6.04□□□□□ -1.44
SCN4A-201ENST00000435607 NBEAL2Q6ZNJ1 2754 aa6.03□□□□□ -1.44
SCN4A-201ENST00000435607 UTP20O75691 2785 aaKnown RBP6.02□□□□□ -1.45
SCN4A-201ENST00000435607 XP32Q5T750 250 aa6.02□□□□□ -1.45
SCN4A-201ENST00000435607 APCP25054 2843 aa6□□□□□ -1.45
SCN4A-201ENST00000435607 UBR5O95071 2799 aaPredicted RBP5.99□□□□□ -1.45
SCN4A-201ENST00000435607 CUBNO60494 3623 aa5.98□□□□□ -1.45
SCN4A-201ENST00000435607 BSNQ9UPA5 3926 aa5.96□□□□□ -1.45
SCN4A-201ENST00000435607 CSMD2Q7Z408 3487 aa5.96□□□□□ -1.45
SCN4A-201ENST00000435607 KRTAP7-1Q8IUC3 87 aa5.94□□□□□ -1.46
SCN4A-201ENST00000435607 ZFHX3Q15911 3703 aa5.93□□□□□ -1.46
SCN4A-201ENST00000435607 FLNCQ14315 2725 aa5.91□□□□□ -1.46
SCN4A-201ENST00000435607 ITPR1Q14643 2758 aa5.9□□□□□ -1.47
SCN4A-201ENST00000435607 CELSR2Q9HCU4 2923 aa5.89□□□□□ -1.47
SCN4A-201ENST00000435607 VPS13CQ709C8 3753 aa5.87□□□□□ -1.47
SCN4A-201ENST00000435607 DCHS2Q6V1P9 2916 aa5.87□□□□□ -1.47
SCN4A-201ENST00000435607 CELSR1Q9NYQ6 3014 aa5.87□□□□□ -1.47
SCN4A-201ENST00000435607 KRTAP1-4P0C5Y4 121 aa5.8□□□□□ -1.48
SCN4A-201ENST00000435607 TENM4Q6N022 2769 aa5.78□□□□□ -1.48
SCN4A-201ENST00000435607 HRNRQ86YZ3 2850 aaPredicted RBP5.78□□□□□ -1.48
SCN4A-201ENST00000435607 ZANQ9Y493 2812 aa5.78□□□□□ -1.48
SCN4A-201ENST00000435607 KRTAP13-3Q3SY46 172 aa5.76□□□□□ -1.49
SCN4A-201ENST00000435607 TENM1Q9UKZ4 2725 aa5.75□□□□□ -1.49
SCN4A-201ENST00000435607 FBN2P35556 2912 aa5.75□□□□□ -1.49
SCN4A-201ENST00000435607 HIVEP1P15822 2718 aa5.74□□□□□ -1.49
SCN4A-201ENST00000435607 H0YAA0 97 aa5.72□□□□□ -1.49
SCN4A-201ENST00000435607 TENM3Q9P273 2699 aa5.7□□□□□ -1.5
SCN4A-201ENST00000435607 NIPBLQ6KC79 2804 aaeCLIP5.67□□□□□ -1.5
SCN4A-201ENST00000435607 NF1P21359 2839 aa5.65□□□□□ -1.5
SCN4A-201ENST00000435607 KRTAP12-2P59991 146 aa5.57□□□□□ -1.52
SCN4A-201ENST00000435607 KRTAP13-4Q3LI77 160 aa5.55□□□□□ -1.52
SCN4A-201ENST00000435607 ZNF469Q96JG9 3925 aaPredicted RBP5.55□□□□□ -1.52
SCN4A-201ENST00000435607 KRTAP15-1Q3LI76 137 aa5.52□□□□□ -1.53
SCN4A-201ENST00000435607 MXRA5Q9NR99 2828 aa5.48□□□□□ -1.53
SCN4A-201ENST00000435607 PDZD2O15018 2839 aa5.47□□□□□ -1.53
SCN4A-201ENST00000435607 TRRAPQ9Y4A5 3859 aa5.46□□□□□ -1.53
SCN4A-201ENST00000435607 TGP01266 2768 aa5.45□□□□□ -1.54
SCN4A-201ENST00000435607 AKAP9Q99996 3911 aa5.39□□□□□ -1.55
SCN4A-201ENST00000435607 TENM2Q9NT68 2774 aa5.38□□□□□ -1.55
SCN4A-201ENST00000435607 KRTAP12-1P59990 96 aa5.32□□□□□ -1.56
SCN4A-201ENST00000435607 FBN1P35555 2871 aaKnown RBP5.31□□□□□ -1.56
SCN4A-201ENST00000435607 PKD1L1Q8TDX9 2849 aa5.31□□□□□ -1.56
SCN4A-201ENST00000435607 OTOGQ6ZRI0 2925 aa5.25□□□□□ -1.57
SCN4A-201ENST00000435607 CSMD3Q7Z407 3707 aa5.25□□□□□ -1.57
SCN4A-201ENST00000435607 VWFP04275 2813 aa5.24□□□□□ -1.57
SCN4A-201ENST00000435607 CRCT1Q9UGL9 99 aa5.24□□□□□ -1.57
SCN4A-201ENST00000435607 INE1O15225 51 aa5.22□□□□□ -1.57
SCN4A-201ENST00000435607 ANK3Q12955 4377 aaKnown RBP5.2□□□□□ -1.58
SCN4A-201ENST00000435607 KRTAP10-12P60413 245 aa5.19□□□□□ -1.58
SCN4A-201ENST00000435607 FBN3Q75N90 2809 aa5.07□□□□□ -1.6
SCN4A-201ENST00000435607 COL7A1Q02388 2944 aa5.07□□□□□ -1.6
SCN4A-201ENST00000435607 KRTAP3-1Q9BYR8 98 aa5.02□□□□□ -1.61
SCN4A-201ENST00000435607 SRRM2Q9UQ35 2752 aaKnown RBP5.01□□□□□ -1.61
SCN4A-201ENST00000435607 KRTAP12-3P60328 96 aa4.97□□□□□ -1.61
SCN4A-201ENST00000435607 KRTAP10-6P60371 365 aaPredicted RBP4.95□□□□□ -1.62
SCN4A-201ENST00000435607 KRTAP8-1Q8IUC2 63 aa4.92□□□□□ -1.62
SCN4A-201ENST00000435607 KRTAP23-1A1A580 65 aa4.9□□□□□ -1.62
SCN4A-201ENST00000435607 MT1HL1P0DM35 61 aa4.89□□□□□ -1.63
SCN4A-201ENST00000435607 MEGF8Q7Z7M0 2845 aa4.86□□□□□ -1.63
SCN4A-201ENST00000435607 ANK2Q01484 3957 aa4.86□□□□□ -1.63
SCN4A-201ENST00000435607 HUWE1Q7Z6Z7 4374 aaKnown RBP4.85□□□□□ -1.63
SCN4A-201ENST00000435607 KRTAP10-5P60370 271 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms