RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 A8MWP4 228 aa9.74□□□□□ -0.85
CCDC28B-202ENST00000421922 DSCR10P59022 87 aa9.73□□□□□ -0.85
CCDC28B-202ENST00000421922 Q8N9L7 120 aa9.73□□□□□ -0.85
CCDC28B-202ENST00000421922 IMUPQ9GZP8 106 aa9.73□□□□□ -0.85
CCDC28B-202ENST00000421922 K7EQZ3 153 aa9.72□□□□□ -0.85
CCDC28B-202ENST00000421922 TNXBP22105 4242 aa9.69□□□□□ -0.86
CCDC28B-202ENST00000421922 IGHV6-1A0A0B4J1U7 121 aa9.69□□□□□ -0.86
CCDC28B-202ENST00000421922 PRR15Q8IV56 129 aa9.69□□□□□ -0.86
CCDC28B-202ENST00000421922 RETNLBQ9BQ08 111 aa9.69□□□□□ -0.86
CCDC28B-202ENST00000421922 A0A1B0GVX0 72 aa9.68□□□□□ -0.86
CCDC28B-202ENST00000421922 HMCN2Q8NDA2 5059 aa9.68□□□□□ -0.86
CCDC28B-202ENST00000421922 A0A087WVE0 104 aa9.65□□□□□ -0.86
CCDC28B-202ENST00000421922 C8orf87E5RJ46 101 aa9.63□□□□□ -0.87
CCDC28B-202ENST00000421922 FP248Q71RG6 208 aaPredicted RBP9.63□□□□□ -0.87
CCDC28B-202ENST00000421922 HCG22E2RYF7 251 aa9.62□□□□□ -0.87
CCDC28B-202ENST00000421922 C8orf17Q9NRJ1 99 aa9.61□□□□□ -0.87
CCDC28B-202ENST00000421922 WFDC13Q8IUB5 93 aa9.59□□□□□ -0.87
CCDC28B-202ENST00000421922 FAM236AA0A1B0GUQ0 79 aa9.58□□□□□ -0.88
CCDC28B-202ENST00000421922 FAM236BA0A1B0GV22 79 aa9.58□□□□□ -0.88
CCDC28B-202ENST00000421922 LINC00313P59037 77 aa9.58□□□□□ -0.88
CCDC28B-202ENST00000421922 MMP24-AS1A0A0U1RRL7 71 aa9.57□□□□□ -0.88
CCDC28B-202ENST00000421922 PRR4Q16378 134 aa9.57□□□□□ -0.88
CCDC28B-202ENST00000421922 CASC2Q6XLA1 102 aa9.57□□□□□ -0.88
CCDC28B-202ENST00000421922 hDV103S1A0JD37 113 aa9.56□□□□□ -0.88
CCDC28B-202ENST00000421922 SCGB1A1P11684 91 aa9.56□□□□□ -0.88
CCDC28B-202ENST00000421922 IGLV7-46A0A075B6I9 117 aa9.55□□□□□ -0.88
CCDC28B-202ENST00000421922 TMEM254Q8TBM7 123 aa9.52□□□□□ -0.89
CCDC28B-202ENST00000421922 C9orf92A6NGG3 77 aa9.51□□□□□ -0.89
CCDC28B-202ENST00000421922 NOTCH2NLQ7Z3S9 236 aa9.51□□□□□ -0.89
CCDC28B-202ENST00000421922 ATOX1O00244 68 aa9.49□□□□□ -0.89
CCDC28B-202ENST00000421922 MRPL34Q9BQ48 92 aaKnown RBP9.49□□□□□ -0.89
CCDC28B-202ENST00000421922 NDUFS5O43920 106 aa9.48□□□□□ -0.89
CCDC28B-202ENST00000421922 SMIM20Q8N5G0 67 aa9.44□□□□□ -0.9
CCDC28B-202ENST00000421922 KRTAP16-1A8MUX0 517 aa9.4□□□□□ -0.9
CCDC28B-202ENST00000421922 LCE2BO14633 110 aa9.4□□□□□ -0.9
CCDC28B-202ENST00000421922 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.9
CCDC28B-202ENST00000421922 TPRXLQ17RH7 258 aa9.39□□□□□ -0.91
CCDC28B-202ENST00000421922 ANAPC13Q9BS18 74 aa9.39□□□□□ -0.91
CCDC28B-202ENST00000421922 TP53AIP1Q9HCN2 124 aa9.39□□□□□ -0.91
CCDC28B-202ENST00000421922 Q8N9P0 234 aaPredicted RBP9.37□□□□□ -0.91
CCDC28B-202ENST00000421922 TRAV7A0A075B6U4 112 aa9.36□□□□□ -0.91
CCDC28B-202ENST00000421922 UQCRQO14949 82 aa9.35□□□□□ -0.91
CCDC28B-202ENST00000421922 OCR1Q9BZK8 76 aa9.35□□□□□ -0.91
CCDC28B-202ENST00000421922 C20orf166-AS1Q96NR2 134 aa9.33□□□□□ -0.92
CCDC28B-202ENST00000421922 LRP2P98164 4655 aa9.33□□□□□ -0.92
CCDC28B-202ENST00000421922 SERP2Q8N6R1 65 aa9.32□□□□□ -0.92
CCDC28B-202ENST00000421922 RNF213Q63HN8 5207 aa9.32□□□□□ -0.92
CCDC28B-202ENST00000421922 A8MUU9 505 aa9.31□□□□□ -0.92
CCDC28B-202ENST00000421922 XP32Q5T750 250 aa9.31□□□□□ -0.92
CCDC28B-202ENST00000421922 Q75L30 129 aa9.3□□□□□ -0.92
CCDC28B-202ENST00000421922 TRAV22A0A0B4J277 110 aa9.28□□□□□ -0.92
CCDC28B-202ENST00000421922 MP68P56378 58 aa9.27□□□□□ -0.93
CCDC28B-202ENST00000421922 H0Y9P7 68 aa9.25□□□□□ -0.93
CCDC28B-202ENST00000421922 COX7CP15954 63 aa9.25□□□□□ -0.93
CCDC28B-202ENST00000421922 RPL37P61927 97 aaKnown RBP9.25□□□□□ -0.93
CCDC28B-202ENST00000421922 C5orf47Q569G3 176 aa9.25□□□□□ -0.93
CCDC28B-202ENST00000421922 ATP11AUNQ6ZP68 121 aa9.24□□□□□ -0.93
CCDC28B-202ENST00000421922 ZCCHC13Q8WW36 166 aaKnown RBP9.24□□□□□ -0.93
CCDC28B-202ENST00000421922 Q5W150 140 aa9.19□□□□□ -0.94
CCDC28B-202ENST00000421922 H3BPC8 53 aa9.18□□□□□ -0.94
CCDC28B-202ENST00000421922 PCP4P48539 62 aa9.17□□□□□ -0.94
CCDC28B-202ENST00000421922 C20orf197Q8N268 126 aa9.17□□□□□ -0.94
CCDC28B-202ENST00000421922 LINC00208Q96KT6 92 aa9.17□□□□□ -0.94
CCDC28B-202ENST00000421922 C1orf64Q8NEQ6 169 aa9.15□□□□□ -0.94
CCDC28B-202ENST00000421922 LOC101927531A0A1B0GV80 90 aa9.14□□□□□ -0.95
CCDC28B-202ENST00000421922 SEC61BP60468 96 aaKnown RBP9.13□□□□□ -0.95
CCDC28B-202ENST00000421922 SNURFQ9Y675 71 aa9.12□□□□□ -0.95
CCDC28B-202ENST00000421922 IGKV2D-30A0A075B6S6 120 aa9.11□□□□□ -0.95
CCDC28B-202ENST00000421922 CCDC179H3BU77 68 aa9.11□□□□□ -0.95
CCDC28B-202ENST00000421922 IGKV2-30P06310 120 aa9.11□□□□□ -0.95
CCDC28B-202ENST00000421922 A0A0U1RQV1 116 aa9.1□□□□□ -0.95
CCDC28B-202ENST00000421922 PCOTHQ58A44 107 aa9.1□□□□□ -0.95
CCDC28B-202ENST00000421922 C7orf65Q6ZTY9 151 aa9.08□□□□□ -0.96
CCDC28B-202ENST00000421922 LPAP08519 4548 aa9.08□□□□□ -0.96
CCDC28B-202ENST00000421922 KLKP1Q107X0 134 aa9.07□□□□□ -0.96
CCDC28B-202ENST00000421922 CYP4F30PQ9H0H9 118 aa9.03□□□□□ -0.96
CCDC28B-202ENST00000421922 NDUFC1O43677 76 aa9.02□□□□□ -0.97
CCDC28B-202ENST00000421922 SPINK7P58062 85 aa9.01□□□□□ -0.97
CCDC28B-202ENST00000421922 KRTAP9-2Q9BYQ4 174 aa8.96□□□□□ -0.98
CCDC28B-202ENST00000421922 CYSTM1Q9H1C7 97 aa8.92□□□□□ -0.98
CCDC28B-202ENST00000421922 H7BZZ5 65 aa8.9□□□□□ -0.98
CCDC28B-202ENST00000421922 LCE2AQ5TA79 106 aaPredicted RBP8.9□□□□□ -0.98
CCDC28B-202ENST00000421922 HRES1P13985 223 aa8.88□□□□□ -0.99
CCDC28B-202ENST00000421922 TMEM258P61165 79 aa8.85□□□□□ -0.99
CCDC28B-202ENST00000421922 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
CCDC28B-202ENST00000421922 SPANXA2-OT1Q8N9U9 137 aa8.84□□□□□ -0.99
CCDC28B-202ENST00000421922 MUC17Q685J3 4493 aa8.84□□□□□ -0.99
CCDC28B-202ENST00000421922 C4orf26Q17RF5 130 aa8.83□□□□□ -1
CCDC28B-202ENST00000421922 KRTAP9-6A0A140TA67 174 aa8.81□□□□□ -1
CCDC28B-202ENST00000421922 RBM12B-AS1Q9P1G2 102 aa8.81□□□□□ -1
CCDC28B-202ENST00000421922 FAM236DA0A1B0GTK5 79 aa8.8□□□□□ -1
CCDC28B-202ENST00000421922 FAM236CP0DP71 79 aa8.8□□□□□ -1
CCDC28B-202ENST00000421922 ATP5EP56381 51 aaPredicted RBP8.8□□□□□ -1
CCDC28B-202ENST00000421922 MUC2Q02817 5179 aa8.78□□□□□ -1
CCDC28B-202ENST00000421922 KRTAP4-1Q9BYQ7 146 aa8.77□□□□□ -1.01
CCDC28B-202ENST00000421922 COX6B2Q6YFQ2 88 aa8.76□□□□□ -1.01
CCDC28B-202ENST00000421922 A8MUN3 132 aa8.73□□□□□ -1.01
CCDC28B-202ENST00000421922 DMAC1Q96GE9 116 aa8.72□□□□□ -1.01
CCDC28B-202ENST00000421922 FAT4Q6V0I7 4981 aa8.72□□□□□ -1.01
CCDC28B-202ENST00000421922 ACYP2P14621 99 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms