RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 RPS29P62273 56 aaKnown RBP6.4□□□□□ -1.39
PTCH1-205ENST00000418258 ADGRG4Q8IZF6 3080 aa6.4□□□□□ -1.39
PTCH1-205ENST00000418258 HIVEP1P15822 2718 aa6.39□□□□□ -1.39
PTCH1-205ENST00000418258 ATMQ13315 3056 aa6.39□□□□□ -1.39
PTCH1-205ENST00000418258 EYSQ5T1H1 3165 aa6.37□□□□□ -1.39
PTCH1-205ENST00000418258 ASB16-AS1Q495Z4 193 aa6.36□□□□□ -1.39
PTCH1-205ENST00000418258 KRTAP11-1Q8IUC1 163 aa6.36□□□□□ -1.39
PTCH1-205ENST00000418258 KRTAP29-1A8MX34 341 aaPredicted RBP6.35□□□□□ -1.39
PTCH1-205ENST00000418258 ZZEF1O43149 2961 aa6.35□□□□□ -1.39
PTCH1-205ENST00000418258 Q6ZRN7 208 aaPredicted RBP6.34□□□□□ -1.4
PTCH1-205ENST00000418258 CELSR2Q9HCU4 2923 aa6.33□□□□□ -1.4
PTCH1-205ENST00000418258 NBEAQ8NFP9 2946 aa6.31□□□□□ -1.4
PTCH1-205ENST00000418258 A8MU10 97 aa6.3□□□□□ -1.4
PTCH1-205ENST00000418258 FLNCQ14315 2725 aa6.29□□□□□ -1.4
PTCH1-205ENST00000418258 KRTAP13-2Q52LG2 175 aa6.27□□□□□ -1.41
PTCH1-205ENST00000418258 TNP1P09430 55 aa6.25□□□□□ -1.41
PTCH1-205ENST00000418258 TENM1Q9UKZ4 2725 aa6.24□□□□□ -1.41
PTCH1-205ENST00000418258 WDFY3Q8IZQ1 3526 aa6.24□□□□□ -1.41
PTCH1-205ENST00000418258 TNRC18O15417 2968 aaPredicted RBP6.23□□□□□ -1.41
PTCH1-205ENST00000418258 MYO15AQ9UKN7 3530 aa6.22□□□□□ -1.41
PTCH1-205ENST00000418258 KRTAP21-3Q3LHN1 58 aa6.21□□□□□ -1.41
PTCH1-205ENST00000418258 NBPF19A0A087WUL8 3843 aa6.2□□□□□ -1.42
PTCH1-205ENST00000418258 KRTAP7-1Q8IUC3 87 aa6.19□□□□□ -1.42
PTCH1-205ENST00000418258 DCHS2Q6V1P9 2916 aa6.19□□□□□ -1.42
PTCH1-205ENST00000418258 DMXL1Q9Y485 3027 aa6.19□□□□□ -1.42
PTCH1-205ENST00000418258 KRTAP25-1Q3LHN0 102 aa6.18□□□□□ -1.42
PTCH1-205ENST00000418258 ASPMQ8IZT6 3477 aa6.17□□□□□ -1.42
PTCH1-205ENST00000418258 TENM4Q6N022 2769 aa6.17□□□□□ -1.42
PTCH1-205ENST00000418258 KRTAP13-1Q8IUC0 172 aa6.16□□□□□ -1.42
PTCH1-205ENST00000418258 KRTAP16-1A8MUX0 517 aa6.15□□□□□ -1.42
PTCH1-205ENST00000418258 KRTAP10-8P60410 259 aa6.15□□□□□ -1.42
PTCH1-205ENST00000418258 C10orf95Q9H7T3 257 aa6.15□□□□□ -1.42
PTCH1-205ENST00000418258 NF1P21359 2839 aa6.15□□□□□ -1.42
PTCH1-205ENST00000418258 CELSR1Q9NYQ6 3014 aa6.14□□□□□ -1.43
PTCH1-205ENST00000418258 A0A1B0GVY2 172 aa6.14□□□□□ -1.43
PTCH1-205ENST00000418258 LOC400499M0QZD8 3231 aa6.13□□□□□ -1.43
PTCH1-205ENST00000418258 NIPBLQ6KC79 2804 aaeCLIP6.07□□□□□ -1.44
PTCH1-205ENST00000418258 FBN2P35556 2912 aa6.06□□□□□ -1.44
PTCH1-205ENST00000418258 ZANQ9Y493 2812 aa6.05□□□□□ -1.44
PTCH1-205ENST00000418258 NDUFAF8A1L188 74 aa6.04□□□□□ -1.44
PTCH1-205ENST00000418258 XP32Q5T750 250 aa6.03□□□□□ -1.44
PTCH1-205ENST00000418258 A6NN06 94 aa6.03□□□□□ -1.44
PTCH1-205ENST00000418258 LAMA5O15230 3695 aa6.02□□□□□ -1.45
PTCH1-205ENST00000418258 KRTAP10-10P60014 251 aa6.02□□□□□ -1.45
PTCH1-205ENST00000418258 PRO2289Q9P1D8 64 aa5.98□□□□□ -1.45
PTCH1-205ENST00000418258 DCHS1Q96JQ0 3298 aa5.97□□□□□ -1.45
PTCH1-205ENST00000418258 ZFHX4Q86UP3 3567 aa5.97□□□□□ -1.45
PTCH1-205ENST00000418258 TENM3Q9P273 2699 aa5.96□□□□□ -1.46
PTCH1-205ENST00000418258 PKD1L1Q8TDX9 2849 aa5.95□□□□□ -1.46
PTCH1-205ENST00000418258 TPRXLQ17RH7 258 aa5.95□□□□□ -1.46
PTCH1-205ENST00000418258 PP632Q6XCG6 107 aa5.95□□□□□ -1.46
PTCH1-205ENST00000418258 HRNRQ86YZ3 2850 aaPredicted RBP5.93□□□□□ -1.46
PTCH1-205ENST00000418258 KRTAP1-4P0C5Y4 121 aa5.91□□□□□ -1.46
PTCH1-205ENST00000418258 VWFP04275 2813 aa5.91□□□□□ -1.46
PTCH1-205ENST00000418258 RELNP78509 3460 aa5.9□□□□□ -1.46
PTCH1-205ENST00000418258 TGP01266 2768 aa5.88□□□□□ -1.47
PTCH1-205ENST00000418258 ZFHX3Q15911 3703 aa5.88□□□□□ -1.47
PTCH1-205ENST00000418258 CSMD1Q96PZ7 3565 aa5.85□□□□□ -1.47
PTCH1-205ENST00000418258 PDZD2O15018 2839 aa5.85□□□□□ -1.47
PTCH1-205ENST00000418258 TENM2Q9NT68 2774 aa5.84□□□□□ -1.47
PTCH1-205ENST00000418258 MXRA5Q9NR99 2828 aa5.8□□□□□ -1.48
PTCH1-205ENST00000418258 H0YAA0 97 aa5.8□□□□□ -1.48
PTCH1-205ENST00000418258 KRTAP13-3Q3SY46 172 aa5.78□□□□□ -1.48
PTCH1-205ENST00000418258 SPENQ96T58 3664 aaKnown RBP5.77□□□□□ -1.49
PTCH1-205ENST00000418258 P0C880 135 aa5.72□□□□□ -1.49
PTCH1-205ENST00000418258 DMDP11532 3685 aa5.71□□□□□ -1.49
PTCH1-205ENST00000418258 SMG1Q96Q15 3661 aaKnown RBP5.71□□□□□ -1.5
PTCH1-205ENST00000418258 CUBNO60494 3623 aa5.58□□□□□ -1.52
PTCH1-205ENST00000418258 SVEP1Q4LDE5 3571 aa5.58□□□□□ -1.52
PTCH1-205ENST00000418258 COL7A1Q02388 2944 aa5.56□□□□□ -1.52
PTCH1-205ENST00000418258 SRRM2Q9UQ35 2752 aaKnown RBP5.54□□□□□ -1.52
PTCH1-205ENST00000418258 FBN1P35555 2871 aaKnown RBP5.51□□□□□ -1.53
PTCH1-205ENST00000418258 KRTAP12-2P59991 146 aa5.51□□□□□ -1.53
PTCH1-205ENST00000418258 TRRAPQ9Y4A5 3859 aa5.49□□□□□ -1.53
PTCH1-205ENST00000418258 KRTAP13-4Q3LI77 160 aa5.44□□□□□ -1.54
PTCH1-205ENST00000418258 MEGF8Q7Z7M0 2845 aa5.44□□□□□ -1.54
PTCH1-205ENST00000418258 CSMD2Q7Z408 3487 aa5.44□□□□□ -1.54
PTCH1-205ENST00000418258 VPS13CQ709C8 3753 aa5.43□□□□□ -1.54
PTCH1-205ENST00000418258 MUC3AQ02505 3323 aa5.41□□□□□ -1.54
PTCH1-205ENST00000418258 FBN3Q75N90 2809 aa5.39□□□□□ -1.55
PTCH1-205ENST00000418258 KRTAP15-1Q3LI76 137 aa5.38□□□□□ -1.55
PTCH1-205ENST00000418258 BSNQ9UPA5 3926 aa5.37□□□□□ -1.55
PTCH1-205ENST00000418258 KRTAP12-1P59990 96 aa5.36□□□□□ -1.55
PTCH1-205ENST00000418258 CSMD3Q7Z407 3707 aa5.26□□□□□ -1.57
PTCH1-205ENST00000418258 OTOGQ6ZRI0 2925 aa5.22□□□□□ -1.57
PTCH1-205ENST00000418258 CRCT1Q9UGL9 99 aa5.22□□□□□ -1.57
PTCH1-205ENST00000418258 KRTAP3-1Q9BYR8 98 aa5.21□□□□□ -1.58
PTCH1-205ENST00000418258 ANK3Q12955 4377 aaKnown RBP5.2□□□□□ -1.58
PTCH1-205ENST00000418258 AKAP9Q99996 3911 aa5.12□□□□□ -1.59
PTCH1-205ENST00000418258 KRTAP10-12P60413 245 aa5.11□□□□□ -1.59
PTCH1-205ENST00000418258 KRTAP10-6P60371 365 aaPredicted RBP5.07□□□□□ -1.6
PTCH1-205ENST00000418258 MT1HL1P0DM35 61 aa5.05□□□□□ -1.6
PTCH1-205ENST00000418258 HUWE1Q7Z6Z7 4374 aaKnown RBP5.04□□□□□ -1.6
PTCH1-205ENST00000418258 ZNF469Q96JG9 3925 aaPredicted RBP5.03□□□□□ -1.6
PTCH1-205ENST00000418258 KRTAP4-5Q9BYR2 181 aa5□□□□□ -1.61
PTCH1-205ENST00000418258 ALMS1Q8TCU4 4167 aa4.99□□□□□ -1.61
PTCH1-205ENST00000418258 INE1O15225 51 aa4.91□□□□□ -1.62
PTCH1-205ENST00000418258 KRTAP12-3P60328 96 aa4.9□□□□□ -1.62
PTCH1-205ENST00000418258 KRTAP3-3Q9BYR6 98 aa4.88□□□□□ -1.63
PTCH1-205ENST00000418258 KRTAP3-2Q9BYR7 98 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms