RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LINC00472Q9H8W2 130 aa5.74□□□□□ -1.49
USP4-204ENST00000416417 FCGBPQ9Y6R7 5405 aaPredicted RBP5.73□□□□□ -1.49
USP4-204ENST00000416417 DNAL4O96015 105 aa5.73□□□□□ -1.49
USP4-204ENST00000416417 CCKP06307 115 aa5.73□□□□□ -1.49
USP4-204ENST00000416417 RBM12B-AS1Q9P1G2 102 aa5.73□□□□□ -1.49
USP4-204ENST00000416417 TRACP01848 142 aa5.72□□□□□ -1.49
USP4-204ENST00000416417 KRTAP19-1Q8IUB9 90 aa5.72□□□□□ -1.49
USP4-204ENST00000416417 VPS25Q9BRG1 176 aa5.71□□□□□ -1.5
USP4-204ENST00000416417 KRTAP9-3Q9BYQ3 159 aa5.71□□□□□ -1.5
USP4-204ENST00000416417 TMEM256-PLSCR3K7ERE1 68 aa5.69□□□□□ -1.5
USP4-204ENST00000416417 COL5A1-AS1Q5SY13 56 aa5.69□□□□□ -1.5
USP4-204ENST00000416417 A0A1B0GVX0 72 aa5.68□□□□□ -1.5
USP4-204ENST00000416417 HSD52Q0P140 79 aa5.67□□□□□ -1.5
USP4-204ENST00000416417 H3BQ85 93 aa5.65□□□□□ -1.5
USP4-204ENST00000416417 COX6CP09669 75 aa5.65□□□□□ -1.5
USP4-204ENST00000416417 UBE2V1Q13404 147 aa5.65□□□□□ -1.5
USP4-204ENST00000416417 ZCCHC13Q8WW36 166 aaKnown RBP5.64□□□□□ -1.51
USP4-204ENST00000416417 C8orf87E5RJ46 101 aa5.64□□□□□ -1.51
USP4-204ENST00000416417 SPINK7P58062 85 aa5.64□□□□□ -1.51
USP4-204ENST00000416417 RBM3P98179 157 aaKnown RBP5.63□□□□□ -1.51
USP4-204ENST00000416417 SCGB1C2P0DMR2 95 aa5.62□□□□□ -1.51
USP4-204ENST00000416417 DSCR8Q96T75 97 aa5.61□□□□□ -1.51
USP4-204ENST00000416417 MTURNQ8N3F0 131 aa5.59□□□□□ -1.51
USP4-204ENST00000416417 BAALC-AS2P0C853 105 aa5.58□□□□□ -1.52
USP4-204ENST00000416417 C9JAW5 83 aa5.58□□□□□ -1.52
USP4-204ENST00000416417 SCGB1A1P11684 91 aa5.58□□□□□ -1.52
USP4-204ENST00000416417 Q6ZQT0 140 aa5.58□□□□□ -1.52
USP4-204ENST00000416417 WFDC13Q8IUB5 93 aa5.58□□□□□ -1.52
USP4-204ENST00000416417 UQCR10Q9UDW1 63 aa5.58□□□□□ -1.52
USP4-204ENST00000416417 J3KT08 172 aa5.57□□□□□ -1.52
USP4-204ENST00000416417 KRTAP3-3Q9BYR6 98 aa5.57□□□□□ -1.52
USP4-204ENST00000416417 KRTAP3-2Q9BYR7 98 aa5.57□□□□□ -1.52
USP4-204ENST00000416417 MACF1Q9UPN3 7388 aaKnown RBP5.57□□□□□ -1.52
USP4-204ENST00000416417 K7ERU9 68 aa5.56□□□□□ -1.52
USP4-204ENST00000416417 LYRM7Q5U5X0 104 aa5.56□□□□□ -1.52
USP4-204ENST00000416417 Q8N9P0 234 aaPredicted RBP5.56□□□□□ -1.52
USP4-204ENST00000416417 NAA38Q9BRA0 125 aaKnown RBP5.56□□□□□ -1.52
USP4-204ENST00000416417 C8orf17Q9NRJ1 99 aa5.56□□□□□ -1.52
USP4-204ENST00000416417 SYNE2Q8WXH0 6885 aaKnown RBP5.55□□□□□ -1.52
USP4-204ENST00000416417 NDUFB1O75438 58 aa5.54□□□□□ -1.52
USP4-204ENST00000416417 IGKV3D-7A0A0C4DH55 119 aa5.53□□□□□ -1.52
USP4-204ENST00000416417 BATFQ16520 125 aa5.53□□□□□ -1.52
USP4-204ENST00000416417 A8MWP4 228 aa5.52□□□□□ -1.53
USP4-204ENST00000416417 KRTAP19-6Q3LI70 58 aa5.52□□□□□ -1.53
USP4-204ENST00000416417 Q6ZVQ6 151 aa5.5□□□□□ -1.53
USP4-204ENST00000416417 C14orf132Q9NPU4 83 aa5.49□□□□□ -1.53
USP4-204ENST00000416417 LOC110117498A0A087WWA1 95 aa5.48□□□□□ -1.53
USP4-204ENST00000416417 ATXN8Q156A1 80 aa5.48□□□□□ -1.53
USP4-204ENST00000416417 MMP24-AS1A0A0U1RRL7 71 aa5.46□□□□□ -1.54
USP4-204ENST00000416417 JMJD7-PLA2G4BH0Y9G9 81 aa5.46□□□□□ -1.54
USP4-204ENST00000416417 TAX1BP3O14907 124 aa5.46□□□□□ -1.54
USP4-204ENST00000416417 PRR15Q8IV56 129 aa5.46□□□□□ -1.54
USP4-204ENST00000416417 LINC00846Q9NV44 126 aa5.46□□□□□ -1.54
USP4-204ENST00000416417 NREPQ16612 68 aa5.44□□□□□ -1.54
USP4-204ENST00000416417 H1FX-AS1Q4G0G2 97 aa5.43□□□□□ -1.54
USP4-204ENST00000416417 MRPL34Q9BQ48 92 aaKnown RBP5.43□□□□□ -1.54
USP4-204ENST00000416417 NDUFS5O43920 106 aa5.43□□□□□ -1.54
USP4-204ENST00000416417 GTF2H5Q6ZYL4 71 aa5.43□□□□□ -1.54
USP4-204ENST00000416417 TMEM254Q8TBM7 123 aa5.43□□□□□ -1.54
USP4-204ENST00000416417 K7EQZ3 153 aa5.42□□□□□ -1.54
USP4-204ENST00000416417 IGKV2D-30A0A075B6S6 120 aa5.41□□□□□ -1.54
USP4-204ENST00000416417 A0A1B0GW54 56 aa5.41□□□□□ -1.54
USP4-204ENST00000416417 IGKV2-30P06310 120 aa5.41□□□□□ -1.54
USP4-204ENST00000416417 hDV103S1A0JD37 113 aa5.4□□□□□ -1.54
USP4-204ENST00000416417 PDE6GP18545 87 aa5.4□□□□□ -1.54
USP4-204ENST00000416417 Q5W150 140 aa5.39□□□□□ -1.55
USP4-204ENST00000416417 K7EP34 96 aa5.38□□□□□ -1.55
USP4-204ENST00000416417 C9orf118A6NHY6 69 aa5.37□□□□□ -1.55
USP4-204ENST00000416417 J3QR89 54 aa5.36□□□□□ -1.55
USP4-204ENST00000416417 KRTAP6-3Q3LI67 103 aa5.35□□□□□ -1.55
USP4-204ENST00000416417 Q8N9L7 120 aa5.35□□□□□ -1.55
USP4-204ENST00000416417 C4orf26Q17RF5 130 aa5.33□□□□□ -1.56
USP4-204ENST00000416417 C7orf65Q6ZTY9 151 aa5.33□□□□□ -1.56
USP4-204ENST00000416417 BPY2O14599 106 aa5.33□□□□□ -1.56
USP4-204ENST00000416417 HCG22E2RYF7 251 aa5.31□□□□□ -1.56
USP4-204ENST00000416417 C5orf47Q569G3 176 aa5.31□□□□□ -1.56
USP4-204ENST00000416417 A0A1W2PPM0 123 aa5.3□□□□□ -1.56
USP4-204ENST00000416417 F8W1H4 67 aa5.29□□□□□ -1.56
USP4-204ENST00000416417 CASC2Q6XLA1 102 aa5.29□□□□□ -1.56
USP4-204ENST00000416417 SPCS1Q9Y6A9 102 aa5.29□□□□□ -1.56
USP4-204ENST00000416417 H3BT86 120 aa5.28□□□□□ -1.56
USP4-204ENST00000416417 FAM236AA0A1B0GUQ0 79 aa5.26□□□□□ -1.57
USP4-204ENST00000416417 FAM236BA0A1B0GV22 79 aa5.26□□□□□ -1.57
USP4-204ENST00000416417 KRTAP3-1Q9BYR8 98 aa5.26□□□□□ -1.57
USP4-204ENST00000416417 MT1BP07438 61 aa5.25□□□□□ -1.57
USP4-204ENST00000416417 A6NN06 94 aa5.23□□□□□ -1.57
USP4-204ENST00000416417 S4R3F8 94 aa5.22□□□□□ -1.57
USP4-204ENST00000416417 NEBP20929 6669 aa5.21□□□□□ -1.58
USP4-204ENST00000416417 CXCL6P80162 114 aa5.21□□□□□ -1.58
USP4-204ENST00000416417 Q5VV11 94 aa5.2□□□□□ -1.58
USP4-204ENST00000416417 LCA10Q71F78 164 aa5.2□□□□□ -1.58
USP4-204ENST00000416417 PRO0461Q9UI25 63 aa5.2□□□□□ -1.58
USP4-204ENST00000416417 SMCPP49901 116 aaPredicted RBP5.19□□□□□ -1.58
USP4-204ENST00000416417 C1orf64Q8NEQ6 169 aa5.19□□□□□ -1.58
USP4-204ENST00000416417 ANAPC13Q9BS18 74 aa5.19□□□□□ -1.58
USP4-204ENST00000416417 KRTAP19-8Q3LI54 63 aa5.17□□□□□ -1.58
USP4-204ENST00000416417 ETDBQ3ZM63 59 aa5.17□□□□□ -1.58
USP4-204ENST00000416417 CSAG1Q6PB30 78 aa5.17□□□□□ -1.58
USP4-204ENST00000416417 MUC12Q9UKN1 5478 aa5.16□□□□□ -1.58
USP4-204ENST00000416417 SPRR2GQ9BYE4 73 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms