RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 A0A087X002 238 aa9.14□□□□□ -0.95
PHRF1-203ENST00000416188 DCHS2Q6V1P9 2916 aa9.14□□□□□ -0.95
PHRF1-203ENST00000416188 R4GN34 69 aa9.12□□□□□ -0.95
PHRF1-203ENST00000416188 SPEGQ15772 3267 aa9.06□□□□□ -0.96
PHRF1-203ENST00000416188 KRTAP29-1A8MX34 341 aaPredicted RBP9.05□□□□□ -0.96
PHRF1-203ENST00000416188 NF1P21359 2839 aa9.05□□□□□ -0.96
PHRF1-203ENST00000416188 H3BS24 57 aa9.05□□□□□ -0.96
PHRF1-203ENST00000416188 KRTAP11-1Q8IUC1 163 aa9.01□□□□□ -0.97
PHRF1-203ENST00000416188 NOTCH2NLQ7Z3S9 236 aa9□□□□□ -0.97
PHRF1-203ENST00000416188 RPL37P61927 97 aaKnown RBP8.99□□□□□ -0.97
PHRF1-203ENST00000416188 HRNRQ86YZ3 2850 aaPredicted RBP8.99□□□□□ -0.97
PHRF1-203ENST00000416188 LOC400499M0QZD8 3231 aa8.98□□□□□ -0.97
PHRF1-203ENST00000416188 M0QZ58 72 aa8.95□□□□□ -0.98
PHRF1-203ENST00000416188 MXRA5Q9NR99 2828 aa8.94□□□□□ -0.98
PHRF1-203ENST00000416188 H1FX-AS1Q4G0G2 97 aa8.94□□□□□ -0.98
PHRF1-203ENST00000416188 KRTAP7-1Q8IUC3 87 aa8.92□□□□□ -0.98
PHRF1-203ENST00000416188 SPATA8Q6RVD6 105 aa8.9□□□□□ -0.98
PHRF1-203ENST00000416188 RPS29P62273 56 aaKnown RBP8.89□□□□□ -0.99
PHRF1-203ENST00000416188 TENM2Q9NT68 2774 aa8.88□□□□□ -0.99
PHRF1-203ENST00000416188 ROMO1P60602 79 aa8.88□□□□□ -0.99
PHRF1-203ENST00000416188 KRTAP13-2Q52LG2 175 aa8.87□□□□□ -0.99
PHRF1-203ENST00000416188 TENM1Q9UKZ4 2725 aa8.86□□□□□ -0.99
PHRF1-203ENST00000416188 FBN2P35556 2912 aa8.86□□□□□ -0.99
PHRF1-203ENST00000416188 ADM2Q7Z4H4 148 aa8.86□□□□□ -0.99
PHRF1-203ENST00000416188 TENM3Q9P273 2699 aa8.85□□□□□ -0.99
PHRF1-203ENST00000416188 MYO15AQ9UKN7 3530 aa8.81□□□□□ -1
PHRF1-203ENST00000416188 ASB16-AS1Q495Z4 193 aa8.81□□□□□ -1
PHRF1-203ENST00000416188 DCHS1Q96JQ0 3298 aa8.81□□□□□ -1
PHRF1-203ENST00000416188 A8MU10 97 aa8.79□□□□□ -1
PHRF1-203ENST00000416188 KRTAP13-1Q8IUC0 172 aa8.79□□□□□ -1
PHRF1-203ENST00000416188 A0A0A0MQY5 61 aa8.77□□□□□ -1
PHRF1-203ENST00000416188 PKD1L1Q8TDX9 2849 aa8.73□□□□□ -1.01
PHRF1-203ENST00000416188 A6NN06 94 aa8.72□□□□□ -1.01
PHRF1-203ENST00000416188 PDZD2O15018 2839 aa8.71□□□□□ -1.02
PHRF1-203ENST00000416188 RELNP78509 3460 aa8.7□□□□□ -1.02
PHRF1-203ENST00000416188 PLAC4Q8WY50 150 aa8.69□□□□□ -1.02
PHRF1-203ENST00000416188 OTOGQ6ZRI0 2925 aa8.61□□□□□ -1.03
PHRF1-203ENST00000416188 CELSR1Q9NYQ6 3014 aa8.61□□□□□ -1.03
PHRF1-203ENST00000416188 A8MUU9 505 aa8.6□□□□□ -1.03
PHRF1-203ENST00000416188 C20orf166-AS1Q96NR2 134 aa8.6□□□□□ -1.03
PHRF1-203ENST00000416188 KRTAP1-4P0C5Y4 121 aa8.56□□□□□ -1.04
PHRF1-203ENST00000416188 A0A1B0GVY2 172 aa8.53□□□□□ -1.04
PHRF1-203ENST00000416188 MUC3AQ02505 3323 aa8.52□□□□□ -1.05
PHRF1-203ENST00000416188 NBPF19A0A087WUL8 3843 aa8.52□□□□□ -1.05
PHRF1-203ENST00000416188 LAMA5O15230 3695 aa8.5□□□□□ -1.05
PHRF1-203ENST00000416188 KRTAP25-1Q3LHN0 102 aa8.48□□□□□ -1.05
PHRF1-203ENST00000416188 VWFP04275 2813 aa8.48□□□□□ -1.05
PHRF1-203ENST00000416188 ZFHX3Q15911 3703 aa8.47□□□□□ -1.05
PHRF1-203ENST00000416188 WDFY3Q8IZQ1 3526 aa8.44□□□□□ -1.06
PHRF1-203ENST00000416188 XP32Q5T750 250 aa8.44□□□□□ -1.06
PHRF1-203ENST00000416188 FBN1P35555 2871 aaKnown RBP8.41□□□□□ -1.06
PHRF1-203ENST00000416188 TPRXLQ17RH7 258 aa8.41□□□□□ -1.06
PHRF1-203ENST00000416188 KRTAP16-1A8MUX0 517 aa8.41□□□□□ -1.06
PHRF1-203ENST00000416188 TGP01266 2768 aa8.38□□□□□ -1.07
PHRF1-203ENST00000416188 ASPMQ8IZT6 3477 aa8.36□□□□□ -1.07
PHRF1-203ENST00000416188 DMDP11532 3685 aa8.31□□□□□ -1.08
PHRF1-203ENST00000416188 NDUFAF8A1L188 74 aa8.26□□□□□ -1.09
PHRF1-203ENST00000416188 KRTAP10-8P60410 259 aa8.26□□□□□ -1.09
PHRF1-203ENST00000416188 TNP1P09430 55 aa8.26□□□□□ -1.09
PHRF1-203ENST00000416188 KRTAP13-3Q3SY46 172 aa8.23□□□□□ -1.09
PHRF1-203ENST00000416188 SMG1Q96Q15 3661 aaKnown RBP8.21□□□□□ -1.1
PHRF1-203ENST00000416188 ZFHX4Q86UP3 3567 aa8.18□□□□□ -1.1
PHRF1-203ENST00000416188 SRRM2Q9UQ35 2752 aaKnown RBP8.16□□□□□ -1.1
PHRF1-203ENST00000416188 KRTAP10-10P60014 251 aa8.14□□□□□ -1.11
PHRF1-203ENST00000416188 C10orf95Q9H7T3 257 aa8.1□□□□□ -1.11
PHRF1-203ENST00000416188 ANK3Q12955 4377 aaKnown RBP8.1□□□□□ -1.11
PHRF1-203ENST00000416188 H0YAA0 97 aa8.08□□□□□ -1.12
PHRF1-203ENST00000416188 CSMD1Q96PZ7 3565 aa8.07□□□□□ -1.12
PHRF1-203ENST00000416188 FBN3Q75N90 2809 aa8.05□□□□□ -1.12
PHRF1-203ENST00000416188 CSMD2Q7Z408 3487 aa8.04□□□□□ -1.12
PHRF1-203ENST00000416188 PP632Q6XCG6 107 aa7.97□□□□□ -1.13
PHRF1-203ENST00000416188 P0C880 135 aa7.95□□□□□ -1.14
PHRF1-203ENST00000416188 CUBNO60494 3623 aa7.87□□□□□ -1.15
PHRF1-203ENST00000416188 TRRAPQ9Y4A5 3859 aa7.83□□□□□ -1.16
PHRF1-203ENST00000416188 PRO2289Q9P1D8 64 aa7.82□□□□□ -1.16
PHRF1-203ENST00000416188 SPENQ96T58 3664 aaKnown RBP7.8□□□□□ -1.16
PHRF1-203ENST00000416188 SVEP1Q4LDE5 3571 aa7.8□□□□□ -1.16
PHRF1-203ENST00000416188 COL7A1Q02388 2944 aa7.76□□□□□ -1.17
PHRF1-203ENST00000416188 KRTAP4-5Q9BYR2 181 aa7.76□□□□□ -1.17
PHRF1-203ENST00000416188 MT1HL1P0DM35 61 aa7.72□□□□□ -1.17
PHRF1-203ENST00000416188 MEGF8Q7Z7M0 2845 aa7.7□□□□□ -1.18
PHRF1-203ENST00000416188 BSNQ9UPA5 3926 aa7.64□□□□□ -1.19
PHRF1-203ENST00000416188 KRTAP12-2P59991 146 aa7.6□□□□□ -1.19
PHRF1-203ENST00000416188 KRTAP3-1Q9BYR8 98 aa7.51□□□□□ -1.21
PHRF1-203ENST00000416188 HUWE1Q7Z6Z7 4374 aaKnown RBP7.51□□□□□ -1.21
PHRF1-203ENST00000416188 KRTAP10-4P60372 401 aaPredicted RBP7.51□□□□□ -1.21
PHRF1-203ENST00000416188 KRTAP12-1P59990 96 aa7.47□□□□□ -1.21
PHRF1-203ENST00000416188 KRTAP13-4Q3LI77 160 aa7.42□□□□□ -1.22
PHRF1-203ENST00000416188 DNHD1Q96M86 4753 aa7.4□□□□□ -1.22
PHRF1-203ENST00000416188 ALMS1Q8TCU4 4167 aa7.38□□□□□ -1.23
PHRF1-203ENST00000416188 KRTAP10-6P60371 365 aaPredicted RBP7.28□□□□□ -1.24
PHRF1-203ENST00000416188 DNAH9Q9NYC9 4486 aa7.27□□□□□ -1.25
PHRF1-203ENST00000416188 AKAP9Q99996 3911 aa7.26□□□□□ -1.25
PHRF1-203ENST00000416188 ZNF469Q96JG9 3925 aaPredicted RBP7.19□□□□□ -1.26
PHRF1-203ENST00000416188 VPS13CQ709C8 3753 aa7.18□□□□□ -1.26
PHRF1-203ENST00000416188 DNAH5Q8TE73 4624 aa7.14□□□□□ -1.27
PHRF1-203ENST00000416188 KRTAP15-1Q3LI76 137 aa7.12□□□□□ -1.27
PHRF1-203ENST00000416188 DNAH11Q96DT5 4516 aa7.04□□□□□ -1.28
PHRF1-203ENST00000416188 KRTAP3-2Q9BYR7 98 aa7.02□□□□□ -1.29
PHRF1-203ENST00000416188 KRTAP3-3Q9BYR6 98 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 1238 ms