RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KRTAP1-3Q8IUG1 177 aa7.55□□□□□ -1.2
CCDC88A-204ENST00000413716 ZZEF1O43149 2961 aa7.55□□□□□ -1.2
CCDC88A-204ENST00000413716 KRTAP4-16G5E9R7 235 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-204ENST00000413716 COL12A1Q99715 3063 aa7.55□□□□□ -1.2
CCDC88A-204ENST00000413716 KRTAP1-5Q9BYS1 174 aa7.55□□□□□ -1.2
CCDC88A-204ENST00000413716 TENM1Q9UKZ4 2725 aa7.54□□□□□ -1.2
CCDC88A-204ENST00000413716 KRTAP10-2P60368 255 aa7.54□□□□□ -1.2
CCDC88A-204ENST00000413716 DMXL2Q8TDJ6 3036 aa7.54□□□□□ -1.2
CCDC88A-204ENST00000413716 NF1P21359 2839 aa7.53□□□□□ -1.2
CCDC88A-204ENST00000413716 SPTBN5Q9NRC6 3674 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-204ENST00000413716 KRTAP1-1Q07627 177 aa7.52□□□□□ -1.21
CCDC88A-204ENST00000413716 NBEAQ8NFP9 2946 aa7.5□□□□□ -1.21
CCDC88A-204ENST00000413716 BOD1L1Q8NFC6 3051 aa7.5□□□□□ -1.21
CCDC88A-204ENST00000413716 CELSR2Q9HCU4 2923 aa7.5□□□□□ -1.21
CCDC88A-204ENST00000413716 UNC80Q8N2C7 3258 aa7.5□□□□□ -1.21
CCDC88A-204ENST00000413716 TNRC18O15417 2968 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-204ENST00000413716 LCE6AA0A183 80 aa7.48□□□□□ -1.21
CCDC88A-204ENST00000413716 NIPBLQ6KC79 2804 aaeCLIP7.44□□□□□ -1.221e-10■□□□□ 8.6
CCDC88A-204ENST00000413716 KRTAP10-8P60410 259 aa7.43□□□□□ -1.22
CCDC88A-204ENST00000413716 WDFY3Q8IZQ1 3526 aa7.42□□□□□ -1.22
CCDC88A-204ENST00000413716 VCANP13611 3396 aa7.42□□□□□ -1.22
CCDC88A-204ENST00000413716 ADGRG4Q8IZF6 3080 aa7.41□□□□□ -1.22
CCDC88A-204ENST00000413716 SPEGQ15772 3267 aa7.37□□□□□ -1.23
CCDC88A-204ENST00000413716 SZT2Q5T011 3432 aa7.37□□□□□ -1.23
CCDC88A-204ENST00000413716 PRO2289Q9P1D8 64 aa7.34□□□□□ -1.23
CCDC88A-204ENST00000413716 Q6ZRN7 208 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-204ENST00000413716 TENM3Q9P273 2699 aa7.33□□□□□ -1.24
CCDC88A-204ENST00000413716 CFAP47Q6ZTR5 3102 aa7.3□□□□□ -1.24
CCDC88A-204ENST00000413716 ATMQ13315 3056 aa7.3□□□□□ -1.24
CCDC88A-204ENST00000413716 ZANQ9Y493 2812 aa7.29□□□□□ -1.24
CCDC88A-204ENST00000413716 DMXL1Q9Y485 3027 aa7.28□□□□□ -1.24
CCDC88A-204ENST00000413716 DCHS2Q6V1P9 2916 aa7.26□□□□□ -1.25
CCDC88A-204ENST00000413716 NBPF19A0A087WUL8 3843 aa7.25□□□□□ -1.25
CCDC88A-204ENST00000413716 H0YAA0 97 aa7.23□□□□□ -1.25
CCDC88A-204ENST00000413716 FBN2P35556 2912 aa7.22□□□□□ -1.25
CCDC88A-204ENST00000413716 EYSQ5T1H1 3165 aa7.2□□□□□ -1.26
CCDC88A-204ENST00000413716 PDZD2O15018 2839 aa7.2□□□□□ -1.26
CCDC88A-204ENST00000413716 KRTAP13-2Q52LG2 175 aa7.19□□□□□ -1.26
CCDC88A-204ENST00000413716 TGP01266 2768 aa7.18□□□□□ -1.26
CCDC88A-204ENST00000413716 VWFP04275 2813 aa7.17□□□□□ -1.26
CCDC88A-204ENST00000413716 MYO15AQ9UKN7 3530 aa7.17□□□□□ -1.26
CCDC88A-204ENST00000413716 CELSR1Q9NYQ6 3014 aa7.16□□□□□ -1.26
CCDC88A-204ENST00000413716 LAMA5O15230 3695 aa7.15□□□□□ -1.26
CCDC88A-204ENST00000413716 HRNRQ86YZ3 2850 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-204ENST00000413716 ASPMQ8IZT6 3477 aa7.09□□□□□ -1.27
CCDC88A-204ENST00000413716 KRTAP13-1Q8IUC0 172 aa7.09□□□□□ -1.27
CCDC88A-204ENST00000413716 SPENQ96T58 3664 aaKnown RBP7.09□□□□□ -1.27
CCDC88A-204ENST00000413716 PKD1L1Q8TDX9 2849 aa7.09□□□□□ -1.27
CCDC88A-204ENST00000413716 MXRA5Q9NR99 2828 aa7.07□□□□□ -1.28
CCDC88A-204ENST00000413716 A0A1B0GVY2 172 aa7.05□□□□□ -1.28
CCDC88A-204ENST00000413716 TENM4Q6N022 2769 aa7.03□□□□□ -1.28
CCDC88A-204ENST00000413716 KRTAP10-10P60014 251 aa7.02□□□□□ -1.28
CCDC88A-204ENST00000413716 SRRM2Q9UQ35 2752 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-204ENST00000413716 XP32Q5T750 250 aa6.97□□□□□ -1.29
CCDC88A-204ENST00000413716 DMDP11532 3685 aa6.96□□□□□ -1.3
CCDC88A-204ENST00000413716 KRTAP7-1Q8IUC3 87 aa6.96□□□□□ -1.3
CCDC88A-204ENST00000413716 SMG1Q96Q15 3661 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-204ENST00000413716 ZFHX3Q15911 3703 aa6.95□□□□□ -1.3
CCDC88A-204ENST00000413716 KRTAP12-2P59991 146 aa6.9□□□□□ -1.3
CCDC88A-204ENST00000413716 TENM2Q9NT68 2774 aa6.9□□□□□ -1.31
CCDC88A-204ENST00000413716 TPRXLQ17RH7 258 aa6.87□□□□□ -1.31
CCDC88A-204ENST00000413716 RELNP78509 3460 aa6.86□□□□□ -1.31
CCDC88A-204ENST00000413716 LOC400499M0QZD8 3231 aa6.86□□□□□ -1.31
CCDC88A-204ENST00000413716 ZFHX4Q86UP3 3567 aa6.83□□□□□ -1.32
CCDC88A-204ENST00000413716 KRTAP13-4Q3LI77 160 aa6.81□□□□□ -1.32
CCDC88A-204ENST00000413716 INE1O15225 51 aa6.78□□□□□ -1.32
CCDC88A-204ENST00000413716 COL7A1Q02388 2944 aa6.77□□□□□ -1.33
CCDC88A-204ENST00000413716 VPS13CQ709C8 3753 aa6.73□□□□□ -1.33
CCDC88A-204ENST00000413716 KRTAP15-1Q3LI76 137 aa6.71□□□□□ -1.34
CCDC88A-204ENST00000413716 CSMD1Q96PZ7 3565 aa6.7□□□□□ -1.34
CCDC88A-204ENST00000413716 KRTAP1-4P0C5Y4 121 aa6.65□□□□□ -1.34
CCDC88A-204ENST00000413716 DCHS1Q96JQ0 3298 aa6.62□□□□□ -1.35
CCDC88A-204ENST00000413716 MEGF8Q7Z7M0 2845 aa6.6□□□□□ -1.35
CCDC88A-204ENST00000413716 KRTAP13-3Q3SY46 172 aa6.6□□□□□ -1.35
CCDC88A-204ENST00000413716 FBN1P35555 2871 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-204ENST00000413716 KRTAP12-1P59990 96 aa6.53□□□□□ -1.36
CCDC88A-204ENST00000413716 AKAP9Q99996 3911 aa6.51□□□□□ -1.37
CCDC88A-204ENST00000413716 SVEP1Q4LDE5 3571 aa6.48□□□□□ -1.37
CCDC88A-204ENST00000413716 TRRAPQ9Y4A5 3859 aa6.48□□□□□ -1.37
CCDC88A-204ENST00000413716 CUBNO60494 3623 aa6.44□□□□□ -1.38
CCDC88A-204ENST00000413716 KRTAP21-3Q3LHN1 58 aa6.43□□□□□ -1.38
CCDC88A-204ENST00000413716 FBN3Q75N90 2809 aa6.33□□□□□ -1.4
CCDC88A-204ENST00000413716 OTOGQ6ZRI0 2925 aa6.33□□□□□ -1.4
CCDC88A-204ENST00000413716 CRCT1Q9UGL9 99 aa6.28□□□□□ -1.4
CCDC88A-204ENST00000413716 BSNQ9UPA5 3926 aa6.25□□□□□ -1.41
CCDC88A-204ENST00000413716 CSMD3Q7Z407 3707 aa6.25□□□□□ -1.41
CCDC88A-204ENST00000413716 MUC3AQ02505 3323 aa6.23□□□□□ -1.41
CCDC88A-204ENST00000413716 KRTAP10-12P60413 245 aa6.2□□□□□ -1.42
CCDC88A-204ENST00000413716 CSMD2Q7Z408 3487 aa6.13□□□□□ -1.43
CCDC88A-204ENST00000413716 LYSTQ99698 3801 aa6.03□□□□□ -1.44
CCDC88A-204ENST00000413716 KRTAP10-6P60371 365 aaPredicted RBP6.02□□□□□ -1.45
CCDC88A-204ENST00000413716 KRTAP3-1Q9BYR8 98 aa6.01□□□□□ -1.45
CCDC88A-204ENST00000413716 KRTAP12-3P60328 96 aa5.98□□□□□ -1.45
CCDC88A-204ENST00000413716 ZNF469Q96JG9 3925 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-204ENST00000413716 KRTAP23-1A1A580 65 aa5.94□□□□□ -1.46
CCDC88A-204ENST00000413716 KRTAP10-5P60370 271 aa5.94□□□□□ -1.46
CCDC88A-204ENST00000413716 LCE3AQ5TA76 89 aa5.76□□□□□ -1.49
CCDC88A-204ENST00000413716 ANK2Q01484 3957 aa5.68□□□□□ -1.5
CCDC88A-204ENST00000413716 KRTAP3-2Q9BYR7 98 aa5.68□□□□□ -1.5
CCDC88A-204ENST00000413716 CMYA5Q8N3K9 4069 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 264.3 ms