RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 BPY2O14599 106 aa11.32□□□□□ -0.6
VSX1-203ENST00000409285 A8MWP4 228 aa11.3□□□□□ -0.6
VSX1-203ENST00000409285 ATP5EP2Q5VTU8 51 aa11.3□□□□□ -0.6
VSX1-203ENST00000409285 IGKV3D-7A0A0C4DH55 119 aa11.29□□□□□ -0.6
VSX1-203ENST00000409285 UBR4Q5T4S7 5183 aa11.28□□□□□ -0.6
VSX1-203ENST00000409285 DSCR10P59022 87 aa11.27□□□□□ -0.6
VSX1-203ENST00000409285 A0A1B0GVX0 72 aa11.26□□□□□ -0.61
VSX1-203ENST00000409285 NDUFB1O75438 58 aa11.26□□□□□ -0.61
VSX1-203ENST00000409285 CXCL6P80162 114 aa11.26□□□□□ -0.61
VSX1-203ENST00000409285 MT-ATP8P03928 68 aa11.23□□□□□ -0.61
VSX1-203ENST00000409285 PRR15Q8IV56 129 aa11.22□□□□□ -0.61
VSX1-203ENST00000409285 IGHV6-1A0A0B4J1U7 121 aa11.21□□□□□ -0.61
VSX1-203ENST00000409285 C9orf92A6NGG3 77 aa11.21□□□□□ -0.61
VSX1-203ENST00000409285 C8orf87E5RJ46 101 aa11.21□□□□□ -0.61
VSX1-203ENST00000409285 K7EQZ3 153 aa11.19□□□□□ -0.62
VSX1-203ENST00000409285 Q8N9L7 120 aa11.19□□□□□ -0.62
VSX1-203ENST00000409285 LINC00313P59037 77 aa11.19□□□□□ -0.62
VSX1-203ENST00000409285 XP32Q5T750 250 aa11.18□□□□□ -0.62
VSX1-203ENST00000409285 HIST1H4AP62805 103 aaKnown RBP11.15□□□□□ -0.62
VSX1-203ENST00000409285 NOTCH2NLQ7Z3S9 236 aa11.14□□□□□ -0.63
VSX1-203ENST00000409285 C8orf17Q9NRJ1 99 aa11.13□□□□□ -0.63
VSX1-203ENST00000409285 KRTAP16-1A8MUX0 517 aa11.12□□□□□ -0.63
VSX1-203ENST00000409285 MMP24-AS1A0A0U1RRL7 71 aa11.1□□□□□ -0.63
VSX1-203ENST00000409285 IMUPQ9GZP8 106 aa11.09□□□□□ -0.63
VSX1-203ENST00000409285 C20orf166-AS1Q96NR2 134 aa11.08□□□□□ -0.64
VSX1-203ENST00000409285 A0A087WVE0 104 aa11.07□□□□□ -0.64
VSX1-203ENST00000409285 Q75L30 129 aa11.06□□□□□ -0.64
VSX1-203ENST00000409285 A8MUU9 505 aa11.05□□□□□ -0.64
VSX1-203ENST00000409285 RPL37P61927 97 aaKnown RBP11.04□□□□□ -0.64
VSX1-203ENST00000409285 TMEM254Q8TBM7 123 aa11.04□□□□□ -0.64
VSX1-203ENST00000409285 hDV103S1A0JD37 113 aa11.02□□□□□ -0.65
VSX1-203ENST00000409285 HCG22E2RYF7 251 aa11.01□□□□□ -0.65
VSX1-203ENST00000409285 Q8N9P0 234 aaPredicted RBP11.01□□□□□ -0.65
VSX1-203ENST00000409285 MRPL34Q9BQ48 92 aaKnown RBP11□□□□□ -0.65
VSX1-203ENST00000409285 CASC2Q6XLA1 102 aa10.99□□□□□ -0.65
VSX1-203ENST00000409285 WFDC13Q8IUB5 93 aa10.99□□□□□ -0.65
VSX1-203ENST00000409285 MUC17Q685J3 4493 aa10.98□□□□□ -0.65
VSX1-203ENST00000409285 RNF213Q63HN8 5207 aa10.97□□□□□ -0.65
VSX1-203ENST00000409285 SEC61BP60468 96 aaKnown RBP10.97□□□□□ -0.65
VSX1-203ENST00000409285 FAM236AA0A1B0GUQ0 79 aa10.93□□□□□ -0.66
VSX1-203ENST00000409285 FAM236BA0A1B0GV22 79 aa10.93□□□□□ -0.66
VSX1-203ENST00000409285 ATP11AUNQ6ZP68 121 aa10.89□□□□□ -0.67
VSX1-203ENST00000409285 SCGB1A1P11684 91 aa10.87□□□□□ -0.67
VSX1-203ENST00000409285 PCOTHQ58A44 107 aa10.87□□□□□ -0.67
VSX1-203ENST00000409285 NDUFS5O43920 106 aa10.82□□□□□ -0.68
VSX1-203ENST00000409285 ZCCHC13Q8WW36 166 aaKnown RBP10.82□□□□□ -0.68
VSX1-203ENST00000409285 MUC2Q02817 5179 aa10.82□□□□□ -0.68
VSX1-203ENST00000409285 ATOX1O00244 68 aa10.79□□□□□ -0.68
VSX1-203ENST00000409285 TP53AIP1Q9HCN2 124 aa10.79□□□□□ -0.68
VSX1-203ENST00000409285 OCR1Q9BZK8 76 aa10.73□□□□□ -0.69
VSX1-203ENST00000409285 SMIM20Q8N5G0 67 aa10.72□□□□□ -0.69
VSX1-203ENST00000409285 KRTAP4-1Q9BYQ7 146 aa10.71□□□□□ -0.69
VSX1-203ENST00000409285 Q5W150 140 aa10.7□□□□□ -0.7
VSX1-203ENST00000409285 TRAV7A0A075B6U4 112 aa10.68□□□□□ -0.7
VSX1-203ENST00000409285 UQCRQO14949 82 aa10.68□□□□□ -0.7
VSX1-203ENST00000409285 ANAPC13Q9BS18 74 aa10.66□□□□□ -0.7
VSX1-203ENST00000409285 SERP2Q8N6R1 65 aa10.64□□□□□ -0.71
VSX1-203ENST00000409285 TRAV22A0A0B4J277 110 aa10.62□□□□□ -0.71
VSX1-203ENST00000409285 A0A0U1RQV1 116 aa10.6□□□□□ -0.71
VSX1-203ENST00000409285 SPINK7P58062 85 aa10.59□□□□□ -0.71
VSX1-203ENST00000409285 H0Y9P7 68 aa10.57□□□□□ -0.72
VSX1-203ENST00000409285 C5orf47Q569G3 176 aa10.56□□□□□ -0.72
VSX1-203ENST00000409285 C7orf65Q6ZTY9 151 aa10.55□□□□□ -0.72
VSX1-203ENST00000409285 MP68P56378 58 aa10.55□□□□□ -0.72
VSX1-203ENST00000409285 COX7CP15954 63 aa10.54□□□□□ -0.72
VSX1-203ENST00000409285 IGKV2-30P06310 120 aa10.53□□□□□ -0.72
VSX1-203ENST00000409285 FAT4Q6V0I7 4981 aa10.51□□□□□ -0.73
VSX1-203ENST00000409285 IGKV2D-30A0A075B6S6 120 aa10.5□□□□□ -0.73
VSX1-203ENST00000409285 HRES1P13985 223 aa10.5□□□□□ -0.73
VSX1-203ENST00000409285 LOC101927531A0A1B0GV80 90 aa10.49□□□□□ -0.73
VSX1-203ENST00000409285 LINC00208Q96KT6 92 aa10.49□□□□□ -0.73
VSX1-203ENST00000409285 MPLKIPQ8TAP9 179 aa10.48□□□□□ -0.73
VSX1-203ENST00000409285 C20orf197Q8N268 126 aa10.47□□□□□ -0.73
VSX1-203ENST00000409285 C1orf64Q8NEQ6 169 aa10.47□□□□□ -0.73
VSX1-203ENST00000409285 H3BPC8 53 aa10.46□□□□□ -0.74
VSX1-203ENST00000409285 KRTAP19-2Q3LHN2 52 aa10.43□□□□□ -0.74
VSX1-203ENST00000409285 CYP4F30PQ9H0H9 118 aa10.43□□□□□ -0.74
VSX1-203ENST00000409285 SNURFQ9Y675 71 aa10.42□□□□□ -0.74
VSX1-203ENST00000409285 CCDC179H3BU77 68 aa10.42□□□□□ -0.74
VSX1-203ENST00000409285 PCP4P48539 62 aa10.4□□□□□ -0.74
VSX1-203ENST00000409285 RBM12B-AS1Q9P1G2 102 aa10.39□□□□□ -0.75
VSX1-203ENST00000409285 KLKP1Q107X0 134 aa10.36□□□□□ -0.75
VSX1-203ENST00000409285 LCE2CQ5TA81 110 aa10.34□□□□□ -0.75
VSX1-203ENST00000409285 FLGP20930 4061 aaPredicted RBP10.3□□□□□ -0.76
VSX1-203ENST00000409285 COX6B2Q6YFQ2 88 aa10.3□□□□□ -0.76
VSX1-203ENST00000409285 LCE2AQ5TA79 106 aaPredicted RBP10.29□□□□□ -0.76
VSX1-203ENST00000409285 CYSTM1Q9H1C7 97 aa10.28□□□□□ -0.76
VSX1-203ENST00000409285 C4orf26Q17RF5 130 aa10.27□□□□□ -0.77
VSX1-203ENST00000409285 FAM236DA0A1B0GTK5 79 aa10.26□□□□□ -0.77
VSX1-203ENST00000409285 FAM236CP0DP71 79 aa10.26□□□□□ -0.77
VSX1-203ENST00000409285 NDUFC1O43677 76 aa10.23□□□□□ -0.77
VSX1-203ENST00000409285 H7BZZ5 65 aa10.19□□□□□ -0.78
VSX1-203ENST00000409285 MT1HP80294 61 aa10.16□□□□□ -0.78
VSX1-203ENST00000409285 KRTAP3-1Q9BYR8 98 aa10.16□□□□□ -0.78
VSX1-203ENST00000409285 H1FX-AS1Q4G0G2 97 aa10.15□□□□□ -0.78
VSX1-203ENST00000409285 A8MUN3 132 aa10.1□□□□□ -0.79
VSX1-203ENST00000409285 SPANXA2-OT1Q8N9U9 137 aa10.09□□□□□ -0.79
VSX1-203ENST00000409285 TMEM258P61165 79 aa10.04□□□□□ -0.8
VSX1-203ENST00000409285 DMAC1Q96GE9 116 aa10.04□□□□□ -0.8
VSX1-203ENST00000409285 ATP5EP56381 51 aaPredicted RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms