RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 NDUFAF8A1L188 74 aa10.04□□□□□ -0.8
SMPD4-202ENST00000409031 R4GN34 69 aa10.04□□□□□ -0.8
SMPD4-202ENST00000409031 UTP20O75691 2785 aaKnown RBP10□□□□□ -0.81
SMPD4-202ENST00000409031 A8MUU9 505 aa10□□□□□ -0.81
SMPD4-202ENST00000409031 CFAP47Q6ZTR5 3102 aa9.98□□□□□ -0.81
SMPD4-202ENST00000409031 HIVEP1P15822 2718 aa9.98□□□□□ -0.81
SMPD4-202ENST00000409031 KRTAP10-1P60331 282 aa9.95□□□□□ -0.82
SMPD4-202ENST00000409031 SPEGQ15772 3267 aa9.94□□□□□ -0.82
SMPD4-202ENST00000409031 Q6ZRN7 208 aaPredicted RBP9.94□□□□□ -0.82
SMPD4-202ENST00000409031 NIPBLQ6KC79 2804 aaeCLIP9.93□□□□□ -0.82
SMPD4-202ENST00000409031 KRTAP10-2P60368 255 aa9.93□□□□□ -0.82
SMPD4-202ENST00000409031 RPS29P62273 56 aaKnown RBP9.9□□□□□ -0.82
SMPD4-202ENST00000409031 M0QZ58 72 aa9.88□□□□□ -0.83
SMPD4-202ENST00000409031 J3QL48 77 aa9.88□□□□□ -0.83
SMPD4-202ENST00000409031 CELSR2Q9HCU4 2923 aa9.87□□□□□ -0.83
SMPD4-202ENST00000409031 KRTAP13-2Q52LG2 175 aa9.85□□□□□ -0.83
SMPD4-202ENST00000409031 ZANQ9Y493 2812 aa9.84□□□□□ -0.83
SMPD4-202ENST00000409031 USP34Q70CQ2 3546 aa9.84□□□□□ -0.83
SMPD4-202ENST00000409031 LOC400499M0QZD8 3231 aa9.82□□□□□ -0.84
SMPD4-202ENST00000409031 C20orf166-AS1Q96NR2 134 aa9.76□□□□□ -0.85
SMPD4-202ENST00000409031 H0YAA0 97 aa9.74□□□□□ -0.85
SMPD4-202ENST00000409031 HRNRQ86YZ3 2850 aaPredicted RBP9.73□□□□□ -0.85
SMPD4-202ENST00000409031 KMT2BQ9UMN6 2715 aaPredicted RBP9.7□□□□□ -0.86
SMPD4-202ENST00000409031 DCHS2Q6V1P9 2916 aa9.69□□□□□ -0.86
SMPD4-202ENST00000409031 TENM4Q6N022 2769 aa9.67□□□□□ -0.86
SMPD4-202ENST00000409031 FBN2P35556 2912 aa9.66□□□□□ -0.86
SMPD4-202ENST00000409031 NF1P21359 2839 aa9.63□□□□□ -0.87
SMPD4-202ENST00000409031 CRYBG3Q68DQ2 2970 aa9.61□□□□□ -0.87
SMPD4-202ENST00000409031 SEC61BP60468 96 aaKnown RBP9.6□□□□□ -0.87
SMPD4-202ENST00000409031 MYO15AQ9UKN7 3530 aa9.6□□□□□ -0.87
SMPD4-202ENST00000409031 PLAC4Q8WY50 150 aa9.58□□□□□ -0.88
SMPD4-202ENST00000409031 KRTAP13-3Q3SY46 172 aa9.56□□□□□ -0.88
SMPD4-202ENST00000409031 C10orf95Q9H7T3 257 aa9.55□□□□□ -0.88
SMPD4-202ENST00000409031 MUC3AQ02505 3323 aa9.54□□□□□ -0.88
SMPD4-202ENST00000409031 Q5VSD8 79 aa9.48□□□□□ -0.89
SMPD4-202ENST00000409031 P0C880 135 aa9.46□□□□□ -0.9
SMPD4-202ENST00000409031 MXRA5Q9NR99 2828 aa9.43□□□□□ -0.9
SMPD4-202ENST00000409031 KRTAP21-3Q3LHN1 58 aa9.41□□□□□ -0.9
SMPD4-202ENST00000409031 KRTAP1-4P0C5Y4 121 aa9.4□□□□□ -0.9
SMPD4-202ENST00000409031 TGP01266 2768 aa9.38□□□□□ -0.91
SMPD4-202ENST00000409031 M0R2T5 61 aa9.37□□□□□ -0.91
SMPD4-202ENST00000409031 PP632Q6XCG6 107 aa9.37□□□□□ -0.91
SMPD4-202ENST00000409031 DCHS1Q96JQ0 3298 aa9.36□□□□□ -0.91
SMPD4-202ENST00000409031 RELNP78509 3460 aa9.36□□□□□ -0.91
SMPD4-202ENST00000409031 LAMA5O15230 3695 aa9.27□□□□□ -0.93
SMPD4-202ENST00000409031 TNP1P09430 55 aa9.26□□□□□ -0.93
SMPD4-202ENST00000409031 TENM3Q9P273 2699 aa9.26□□□□□ -0.93
SMPD4-202ENST00000409031 CELSR1Q9NYQ6 3014 aa9.22□□□□□ -0.93
SMPD4-202ENST00000409031 DMDP11532 3685 aa9.18□□□□□ -0.94
SMPD4-202ENST00000409031 ASPMQ8IZT6 3477 aa9.15□□□□□ -0.95
SMPD4-202ENST00000409031 PDZD2O15018 2839 aa9.14□□□□□ -0.95
SMPD4-202ENST00000409031 WDFY3Q8IZQ1 3526 aa9.12□□□□□ -0.95
SMPD4-202ENST00000409031 KRTAP10-8P60410 259 aa9.09□□□□□ -0.95
SMPD4-202ENST00000409031 XP32Q5T750 250 aa9.08□□□□□ -0.96
SMPD4-202ENST00000409031 TPRXLQ17RH7 258 aa9.05□□□□□ -0.96
SMPD4-202ENST00000409031 OTOGQ6ZRI0 2925 aa9.01□□□□□ -0.97
SMPD4-202ENST00000409031 TENM1Q9UKZ4 2725 aa8.99□□□□□ -0.97
SMPD4-202ENST00000409031 CSMD1Q96PZ7 3565 aa8.95□□□□□ -0.98
SMPD4-202ENST00000409031 KRTAP12-2P59991 146 aa8.94□□□□□ -0.98
SMPD4-202ENST00000409031 ZFHX4Q86UP3 3567 aa8.91□□□□□ -0.98
SMPD4-202ENST00000409031 KRTAP3-1Q9BYR8 98 aa8.89□□□□□ -0.99
SMPD4-202ENST00000409031 PKD1L1Q8TDX9 2849 aa8.88□□□□□ -0.99
SMPD4-202ENST00000409031 SMG1Q96Q15 3661 aaKnown RBP8.88□□□□□ -0.99
SMPD4-202ENST00000409031 FBN1P35555 2871 aaKnown RBP8.86□□□□□ -0.99
SMPD4-202ENST00000409031 KRTAP12-1P59990 96 aa8.86□□□□□ -0.99
SMPD4-202ENST00000409031 TENM2Q9NT68 2774 aa8.85□□□□□ -0.99
SMPD4-202ENST00000409031 NBPF19A0A087WUL8 3843 aa8.83□□□□□ -1
SMPD4-202ENST00000409031 ZFHX3Q15911 3703 aa8.8□□□□□ -1
SMPD4-202ENST00000409031 VWFP04275 2813 aa8.8□□□□□ -1
SMPD4-202ENST00000409031 KRTAP10-6P60371 365 aaPredicted RBP8.74□□□□□ -1.01
SMPD4-202ENST00000409031 KRTAP15-1Q3LI76 137 aa8.71□□□□□ -1.01
SMPD4-202ENST00000409031 KRTAP13-4Q3LI77 160 aa8.71□□□□□ -1.02
SMPD4-202ENST00000409031 SRRM2Q9UQ35 2752 aaKnown RBP8.64□□□□□ -1.03
SMPD4-202ENST00000409031 FBN3Q75N90 2809 aa8.59□□□□□ -1.03
SMPD4-202ENST00000409031 CSMD2Q7Z408 3487 aa8.57□□□□□ -1.04
SMPD4-202ENST00000409031 SPENQ96T58 3664 aaKnown RBP8.52□□□□□ -1.05
SMPD4-202ENST00000409031 SVEP1Q4LDE5 3571 aa8.51□□□□□ -1.05
SMPD4-202ENST00000409031 MEGF8Q7Z7M0 2845 aa8.5□□□□□ -1.05
SMPD4-202ENST00000409031 A0A1B0GVY2 172 aa8.48□□□□□ -1.05
SMPD4-202ENST00000409031 CUBNO60494 3623 aa8.44□□□□□ -1.06
SMPD4-202ENST00000409031 KRTAP3-2Q9BYR7 98 aa8.44□□□□□ -1.06
SMPD4-202ENST00000409031 BSNQ9UPA5 3926 aa8.41□□□□□ -1.06
SMPD4-202ENST00000409031 ANK3Q12955 4377 aaKnown RBP8.4□□□□□ -1.07
SMPD4-202ENST00000409031 KRTAP3-3Q9BYR6 98 aa8.35□□□□□ -1.07
SMPD4-202ENST00000409031 TRRAPQ9Y4A5 3859 aa8.28□□□□□ -1.08
SMPD4-202ENST00000409031 COL7A1Q02388 2944 aa8.26□□□□□ -1.09
SMPD4-202ENST00000409031 KRTAP10-10P60014 251 aa8.24□□□□□ -1.09
SMPD4-202ENST00000409031 INE1O15225 51 aa8.21□□□□□ -1.09
SMPD4-202ENST00000409031 PRO2289Q9P1D8 64 aa8.2□□□□□ -1.1
SMPD4-202ENST00000409031 KRTAP23-1A1A580 65 aa7.94□□□□□ -1.14
SMPD4-202ENST00000409031 ZNF469Q96JG9 3925 aaPredicted RBP7.87□□□□□ -1.15
SMPD4-202ENST00000409031 KRTAP10-4P60372 401 aaPredicted RBP7.81□□□□□ -1.16
SMPD4-202ENST00000409031 VPS13CQ709C8 3753 aa7.8□□□□□ -1.16
SMPD4-202ENST00000409031 MT1HL1P0DM35 61 aa7.77□□□□□ -1.17
SMPD4-202ENST00000409031 AKAP9Q99996 3911 aa7.74□□□□□ -1.17
SMPD4-202ENST00000409031 HUWE1Q7Z6Z7 4374 aaKnown RBP7.72□□□□□ -1.17
SMPD4-202ENST00000409031 LORP23490 312 aaPredicted RBP7.62□□□□□ -1.19
SMPD4-202ENST00000409031 DNHD1Q96M86 4753 aa7.59□□□□□ -1.19
SMPD4-202ENST00000409031 KRTAP10-12P60413 245 aa7.57□□□□□ -1.2
SMPD4-202ENST00000409031 CSMD3Q7Z407 3707 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms