RNA–Protein interactions for RNA: ENST00000406438.4

SMCR8-201, Transcript of Smith-Magenis syndrome chromosome region, candidate 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCR8, Length 8,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCR8-201ENST00000406438 C20orf166-AS1Q96NR2 134 aa6.99□□□□□ -1.29
SMCR8-201ENST00000406438 SPTBN5Q9NRC6 3674 aaKnown RBP6.99□□□□□ -1.29
SMCR8-201ENST00000406438 KRTAP4-16G5E9R7 235 aaPredicted RBP6.99□□□□□ -1.29
SMCR8-201ENST00000406438 ATMQ13315 3056 aa6.98□□□□□ -1.29
SMCR8-201ENST00000406438 HIVEP1P15822 2718 aa6.98□□□□□ -1.29
SMCR8-201ENST00000406438 A8MUU9 505 aa6.98□□□□□ -1.29
SMCR8-201ENST00000406438 CELSR2Q9HCU4 2923 aa6.97□□□□□ -1.29
SMCR8-201ENST00000406438 RPS29P62273 56 aaKnown RBP6.96□□□□□ -1.3
SMCR8-201ENST00000406438 DMXL1Q9Y485 3027 aa6.95□□□□□ -1.3
SMCR8-201ENST00000406438 A6NN06 94 aa6.95□□□□□ -1.3
SMCR8-201ENST00000406438 WDFY3Q8IZQ1 3526 aa6.93□□□□□ -1.3
SMCR8-201ENST00000406438 KRTAP29-1A8MX34 341 aaPredicted RBP6.93□□□□□ -1.3
SMCR8-201ENST00000406438 TNRC18O15417 2968 aaPredicted RBP6.92□□□□□ -1.3
SMCR8-201ENST00000406438 TENM1Q9UKZ4 2725 aa6.91□□□□□ -1.3
SMCR8-201ENST00000406438 EYSQ5T1H1 3165 aa6.89□□□□□ -1.31
SMCR8-201ENST00000406438 FLNCQ14315 2725 aa6.87□□□□□ -1.31
SMCR8-201ENST00000406438 KRTAP25-1Q3LHN0 102 aa6.86□□□□□ -1.31
SMCR8-201ENST00000406438 NF1P21359 2839 aa6.85□□□□□ -1.31
SMCR8-201ENST00000406438 NOTCH2NLQ7Z3S9 236 aa6.84□□□□□ -1.31
SMCR8-201ENST00000406438 TNP1P09430 55 aa6.82□□□□□ -1.32
SMCR8-201ENST00000406438 NBPF19A0A087WUL8 3843 aa6.8□□□□□ -1.32
SMCR8-201ENST00000406438 A8MU10 97 aa6.79□□□□□ -1.32
SMCR8-201ENST00000406438 MYO15AQ9UKN7 3530 aa6.79□□□□□ -1.32
SMCR8-201ENST00000406438 CELSR1Q9NYQ6 3014 aa6.79□□□□□ -1.32
SMCR8-201ENST00000406438 DCHS2Q6V1P9 2916 aa6.78□□□□□ -1.32
SMCR8-201ENST00000406438 NIPBLQ6KC79 2804 aaeCLIP6.76□□□□□ -1.33
SMCR8-201ENST00000406438 ASPMQ8IZT6 3477 aa6.75□□□□□ -1.33
SMCR8-201ENST00000406438 KRTAP11-1Q8IUC1 163 aa6.74□□□□□ -1.33
SMCR8-201ENST00000406438 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
SMCR8-201ENST00000406438 Q6ZRN7 208 aaPredicted RBP6.73□□□□□ -1.33
SMCR8-201ENST00000406438 LAMA5O15230 3695 aa6.7□□□□□ -1.34
SMCR8-201ENST00000406438 NDUFAF8A1L188 74 aa6.7□□□□□ -1.34
SMCR8-201ENST00000406438 FBN2P35556 2912 aa6.69□□□□□ -1.34
SMCR8-201ENST00000406438 LOC400499M0QZD8 3231 aa6.69□□□□□ -1.34
SMCR8-201ENST00000406438 KRTAP13-2Q52LG2 175 aa6.68□□□□□ -1.34
SMCR8-201ENST00000406438 ZANQ9Y493 2812 aa6.66□□□□□ -1.34
SMCR8-201ENST00000406438 TENM3Q9P273 2699 aa6.64□□□□□ -1.35
SMCR8-201ENST00000406438 KRTAP13-1Q8IUC0 172 aa6.63□□□□□ -1.35
SMCR8-201ENST00000406438 KRTAP10-8P60410 259 aa6.61□□□□□ -1.35
SMCR8-201ENST00000406438 PP632Q6XCG6 107 aa6.6□□□□□ -1.35
SMCR8-201ENST00000406438 KRTAP7-1Q8IUC3 87 aa6.59□□□□□ -1.35
SMCR8-201ENST00000406438 TGP01266 2768 aa6.58□□□□□ -1.36
SMCR8-201ENST00000406438 DCHS1Q96JQ0 3298 aa6.58□□□□□ -1.36
SMCR8-201ENST00000406438 PDZD2O15018 2839 aa6.58□□□□□ -1.36
SMCR8-201ENST00000406438 ZFHX4Q86UP3 3567 aa6.58□□□□□ -1.36
SMCR8-201ENST00000406438 TENM4Q6N022 2769 aa6.58□□□□□ -1.36
SMCR8-201ENST00000406438 HRNRQ86YZ3 2850 aaPredicted RBP6.54□□□□□ -1.36
SMCR8-201ENST00000406438 PRO2289Q9P1D8 64 aa6.51□□□□□ -1.37
SMCR8-201ENST00000406438 KRTAP21-3Q3LHN1 58 aa6.5□□□□□ -1.37
SMCR8-201ENST00000406438 PKD1L1Q8TDX9 2849 aa6.49□□□□□ -1.37
SMCR8-201ENST00000406438 VWFP04275 2813 aa6.48□□□□□ -1.37
SMCR8-201ENST00000406438 SPENQ96T58 3664 aaKnown RBP6.47□□□□□ -1.37
SMCR8-201ENST00000406438 MXRA5Q9NR99 2828 aa6.47□□□□□ -1.37
SMCR8-201ENST00000406438 CSMD1Q96PZ7 3565 aa6.46□□□□□ -1.38
SMCR8-201ENST00000406438 RELNP78509 3460 aa6.45□□□□□ -1.38
SMCR8-201ENST00000406438 A0A1B0GVY2 172 aa6.44□□□□□ -1.38
SMCR8-201ENST00000406438 XP32Q5T750 250 aa6.43□□□□□ -1.38
SMCR8-201ENST00000406438 ZFHX3Q15911 3703 aa6.41□□□□□ -1.38
SMCR8-201ENST00000406438 KRTAP10-10P60014 251 aa6.39□□□□□ -1.39
SMCR8-201ENST00000406438 TPRXLQ17RH7 258 aa6.38□□□□□ -1.39
SMCR8-201ENST00000406438 SMG1Q96Q15 3661 aaKnown RBP6.37□□□□□ -1.39
SMCR8-201ENST00000406438 H0YAA0 97 aa6.35□□□□□ -1.39
SMCR8-201ENST00000406438 TENM2Q9NT68 2774 aa6.35□□□□□ -1.39
SMCR8-201ENST00000406438 P0C880 135 aa6.33□□□□□ -1.4
SMCR8-201ENST00000406438 DMDP11532 3685 aa6.31□□□□□ -1.4
SMCR8-201ENST00000406438 KRTAP1-4P0C5Y4 121 aa6.29□□□□□ -1.4
SMCR8-201ENST00000406438 COL7A1Q02388 2944 aa6.23□□□□□ -1.41
SMCR8-201ENST00000406438 SRRM2Q9UQ35 2752 aaKnown RBP6.18□□□□□ -1.42
SMCR8-201ENST00000406438 KRTAP13-3Q3SY46 172 aa6.17□□□□□ -1.42
SMCR8-201ENST00000406438 CUBNO60494 3623 aa6.13□□□□□ -1.43
SMCR8-201ENST00000406438 SVEP1Q4LDE5 3571 aa6.12□□□□□ -1.43
SMCR8-201ENST00000406438 VPS13CQ709C8 3753 aa6.11□□□□□ -1.43
SMCR8-201ENST00000406438 MEGF8Q7Z7M0 2845 aa6.06□□□□□ -1.44
SMCR8-201ENST00000406438 TRRAPQ9Y4A5 3859 aa6.04□□□□□ -1.44
SMCR8-201ENST00000406438 FBN1P35555 2871 aaKnown RBP6□□□□□ -1.45
SMCR8-201ENST00000406438 KRTAP12-2P59991 146 aa5.98□□□□□ -1.45
SMCR8-201ENST00000406438 KRTAP13-4Q3LI77 160 aa5.96□□□□□ -1.45
SMCR8-201ENST00000406438 BSNQ9UPA5 3926 aa5.95□□□□□ -1.46
SMCR8-201ENST00000406438 FBN3Q75N90 2809 aa5.94□□□□□ -1.46
SMCR8-201ENST00000406438 MUC3AQ02505 3323 aa5.92□□□□□ -1.46
SMCR8-201ENST00000406438 AKAP9Q99996 3911 aa5.87□□□□□ -1.47
SMCR8-201ENST00000406438 KRTAP12-1P59990 96 aa5.83□□□□□ -1.48
SMCR8-201ENST00000406438 KRTAP15-1Q3LI76 137 aa5.83□□□□□ -1.48
SMCR8-201ENST00000406438 CSMD3Q7Z407 3707 aa5.83□□□□□ -1.48
SMCR8-201ENST00000406438 CSMD2Q7Z408 3487 aa5.83□□□□□ -1.48
SMCR8-201ENST00000406438 OTOGQ6ZRI0 2925 aa5.81□□□□□ -1.48
SMCR8-201ENST00000406438 INE1O15225 51 aa5.67□□□□□ -1.5
SMCR8-201ENST00000406438 KRTAP3-1Q9BYR8 98 aa5.59□□□□□ -1.51
SMCR8-201ENST00000406438 ZNF469Q96JG9 3925 aaPredicted RBP5.56□□□□□ -1.52
SMCR8-201ENST00000406438 CRCT1Q9UGL9 99 aa5.53□□□□□ -1.52
SMCR8-201ENST00000406438 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
SMCR8-201ENST00000406438 KRTAP10-6P60371 365 aaPredicted RBP5.5□□□□□ -1.53
SMCR8-201ENST00000406438 ANK3Q12955 4377 aaKnown RBP5.44□□□□□ -1.54
SMCR8-201ENST00000406438 ALMS1Q8TCU4 4167 aa5.35□□□□□ -1.55
SMCR8-201ENST00000406438 LYSTQ99698 3801 aa5.32□□□□□ -1.56
SMCR8-201ENST00000406438 HUWE1Q7Z6Z7 4374 aaKnown RBP5.32□□□□□ -1.56
SMCR8-201ENST00000406438 KRTAP12-3P60328 96 aa5.3□□□□□ -1.56
SMCR8-201ENST00000406438 MT1HL1P0DM35 61 aa5.27□□□□□ -1.57
SMCR8-201ENST00000406438 KRTAP3-3Q9BYR6 98 aa5.27□□□□□ -1.57
SMCR8-201ENST00000406438 KRTAP23-1A1A580 65 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms