RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SCGB1A1P11684 91 aa10.03□□□□□ -0.8
SDC1-203ENST00000403076 CXCL6P80162 114 aa10.03□□□□□ -0.8
SDC1-203ENST00000403076 IGKV3D-7A0A0C4DH55 119 aa10.02□□□□□ -0.8
SDC1-203ENST00000403076 ATP5EP2Q5VTU8 51 aa10.02□□□□□ -0.8
SDC1-203ENST00000403076 A0A1B0GVX0 72 aa10.02□□□□□ -0.81
SDC1-203ENST00000403076 C9orf92A6NGG3 77 aa10.02□□□□□ -0.81
SDC1-203ENST00000403076 PRR15Q8IV56 129 aa10□□□□□ -0.81
SDC1-203ENST00000403076 K7EQZ3 153 aa9.99□□□□□ -0.81
SDC1-203ENST00000403076 Q8N9L7 120 aa9.99□□□□□ -0.81
SDC1-203ENST00000403076 LINC00313P59037 77 aa9.97□□□□□ -0.81
SDC1-203ENST00000403076 KRTAP13-3Q3SY46 172 aa9.97□□□□□ -0.81
SDC1-203ENST00000403076 TPRXLQ17RH7 258 aa9.97□□□□□ -0.81
SDC1-203ENST00000403076 C8orf87E5RJ46 101 aa9.95□□□□□ -0.82
SDC1-203ENST00000403076 NOTCH2NLQ7Z3S9 236 aa9.93□□□□□ -0.82
SDC1-203ENST00000403076 C8orf17Q9NRJ1 99 aa9.93□□□□□ -0.82
SDC1-203ENST00000403076 HIST1H4AP62805 103 aaKnown RBP9.92□□□□□ -0.82
SDC1-203ENST00000403076 MMP24-AS1A0A0U1RRL7 71 aa9.87□□□□□ -0.83
SDC1-203ENST00000403076 WFDC13Q8IUB5 93 aa9.87□□□□□ -0.83
SDC1-203ENST00000403076 hDV103S1A0JD37 113 aa9.85□□□□□ -0.83
SDC1-203ENST00000403076 MT-ATP8P03928 68 aa9.85□□□□□ -0.83
SDC1-203ENST00000403076 XP32Q5T750 250 aa9.85□□□□□ -0.83
SDC1-203ENST00000403076 HCG22E2RYF7 251 aa9.84□□□□□ -0.83
SDC1-203ENST00000403076 CASC2Q6XLA1 102 aa9.83□□□□□ -0.84
SDC1-203ENST00000403076 IMUPQ9GZP8 106 aa9.83□□□□□ -0.84
SDC1-203ENST00000403076 KRTAP16-1A8MUX0 517 aa9.82□□□□□ -0.84
SDC1-203ENST00000403076 TMEM254Q8TBM7 123 aa9.82□□□□□ -0.84
SDC1-203ENST00000403076 A0A087WVE0 104 aa9.81□□□□□ -0.84
SDC1-203ENST00000403076 HMCN2Q8NDA2 5059 aa9.8□□□□□ -0.84
SDC1-203ENST00000403076 MRPL34Q9BQ48 92 aaKnown RBP9.8□□□□□ -0.84
SDC1-203ENST00000403076 C20orf166-AS1Q96NR2 134 aa9.77□□□□□ -0.85
SDC1-203ENST00000403076 A8MUU9 505 aa9.76□□□□□ -0.85
SDC1-203ENST00000403076 NDUFS5O43920 106 aa9.76□□□□□ -0.85
SDC1-203ENST00000403076 LPAP08519 4548 aa9.76□□□□□ -0.85
SDC1-203ENST00000403076 Q75L30 129 aa9.75□□□□□ -0.85
SDC1-203ENST00000403076 RPL37P61927 97 aaKnown RBP9.74□□□□□ -0.85
SDC1-203ENST00000403076 Q8N9P0 234 aaPredicted RBP9.73□□□□□ -0.85
SDC1-203ENST00000403076 ATP11AUNQ6ZP68 121 aa9.7□□□□□ -0.86
SDC1-203ENST00000403076 LRP2P98164 4655 aa9.68□□□□□ -0.86
SDC1-203ENST00000403076 SEC61BP60468 96 aaKnown RBP9.67□□□□□ -0.86
SDC1-203ENST00000403076 PCOTHQ58A44 107 aa9.65□□□□□ -0.86
SDC1-203ENST00000403076 FAM236AA0A1B0GUQ0 79 aa9.61□□□□□ -0.87
SDC1-203ENST00000403076 FAM236BA0A1B0GV22 79 aa9.61□□□□□ -0.87
SDC1-203ENST00000403076 ZCCHC13Q8WW36 166 aaKnown RBP9.61□□□□□ -0.87
SDC1-203ENST00000403076 TP53AIP1Q9HCN2 124 aa9.61□□□□□ -0.87
SDC1-203ENST00000403076 UBR4Q5T4S7 5183 aa9.61□□□□□ -0.87
SDC1-203ENST00000403076 Q5W150 140 aa9.54□□□□□ -0.88
SDC1-203ENST00000403076 UQCRQO14949 82 aa9.53□□□□□ -0.88
SDC1-203ENST00000403076 ANAPC13Q9BS18 74 aa9.53□□□□□ -0.88
SDC1-203ENST00000403076 OCR1Q9BZK8 76 aa9.53□□□□□ -0.88
SDC1-203ENST00000403076 ATOX1O00244 68 aa9.51□□□□□ -0.89
SDC1-203ENST00000403076 SMIM20Q8N5G0 67 aa9.5□□□□□ -0.89
SDC1-203ENST00000403076 TRAV22A0A0B4J277 110 aa9.47□□□□□ -0.89
SDC1-203ENST00000403076 H0Y9P7 68 aa9.45□□□□□ -0.9
SDC1-203ENST00000403076 MUC17Q685J3 4493 aa9.45□□□□□ -0.9
SDC1-203ENST00000403076 IGKV2D-30A0A075B6S6 120 aa9.43□□□□□ -0.9
SDC1-203ENST00000403076 TRAV7A0A075B6U4 112 aa9.43□□□□□ -0.9
SDC1-203ENST00000403076 IGKV2-30P06310 120 aa9.43□□□□□ -0.9
SDC1-203ENST00000403076 SPINK7P58062 85 aa9.42□□□□□ -0.9
SDC1-203ENST00000403076 KRTAP4-1Q9BYQ7 146 aa9.42□□□□□ -0.9
SDC1-203ENST00000403076 MP68P56378 58 aa9.41□□□□□ -0.9
SDC1-203ENST00000403076 C5orf47Q569G3 176 aa9.41□□□□□ -0.9
SDC1-203ENST00000403076 C7orf65Q6ZTY9 151 aa9.38□□□□□ -0.91
SDC1-203ENST00000403076 SERP2Q8N6R1 65 aa9.37□□□□□ -0.91
SDC1-203ENST00000403076 LINC00208Q96KT6 92 aa9.36□□□□□ -0.91
SDC1-203ENST00000403076 LOC101927531A0A1B0GV80 90 aa9.35□□□□□ -0.91
SDC1-203ENST00000403076 C1orf64Q8NEQ6 169 aa9.35□□□□□ -0.91
SDC1-203ENST00000403076 H3BPC8 53 aa9.33□□□□□ -0.92
SDC1-203ENST00000403076 RNF213Q63HN8 5207 aa9.32□□□□□ -0.92
SDC1-203ENST00000403076 CCDC179H3BU77 68 aa9.3□□□□□ -0.92
SDC1-203ENST00000403076 CYP4F30PQ9H0H9 118 aa9.3□□□□□ -0.92
SDC1-203ENST00000403076 COX7CP15954 63 aa9.27□□□□□ -0.93
SDC1-203ENST00000403076 HRES1P13985 223 aa9.26□□□□□ -0.93
SDC1-203ENST00000403076 C20orf197Q8N268 126 aa9.23□□□□□ -0.93
SDC1-203ENST00000403076 RBM12B-AS1Q9P1G2 102 aa9.23□□□□□ -0.93
SDC1-203ENST00000403076 A0A0U1RQV1 116 aa9.22□□□□□ -0.93
SDC1-203ENST00000403076 SNURFQ9Y675 71 aa9.21□□□□□ -0.93
SDC1-203ENST00000403076 FAM236DA0A1B0GTK5 79 aa9.2□□□□□ -0.94
SDC1-203ENST00000403076 FAM236CP0DP71 79 aa9.2□□□□□ -0.94
SDC1-203ENST00000403076 MUC2Q02817 5179 aa9.19□□□□□ -0.94
SDC1-203ENST00000403076 C4orf26Q17RF5 130 aa9.19□□□□□ -0.94
SDC1-203ENST00000403076 COX6B2Q6YFQ2 88 aa9.18□□□□□ -0.94
SDC1-203ENST00000403076 KLKP1Q107X0 134 aa9.17□□□□□ -0.94
SDC1-203ENST00000403076 MPLKIPQ8TAP9 179 aa9.17□□□□□ -0.94
SDC1-203ENST00000403076 KRTAP19-2Q3LHN2 52 aa9.08□□□□□ -0.96
SDC1-203ENST00000403076 NDUFC1O43677 76 aa9.05□□□□□ -0.96
SDC1-203ENST00000403076 RPS28P62857 69 aaKnown RBP9.03□□□□□ -0.96
SDC1-203ENST00000403076 SVIPQ8NHG7 77 aa9.03□□□□□ -0.96
SDC1-203ENST00000403076 TMEM258P61165 79 aa9.02□□□□□ -0.97
SDC1-203ENST00000403076 LCE2CQ5TA81 110 aa9.02□□□□□ -0.97
SDC1-203ENST00000403076 H1FX-AS1Q4G0G2 97 aa9.01□□□□□ -0.97
SDC1-203ENST00000403076 KRTAP3-1Q9BYR8 98 aa9□□□□□ -0.97
SDC1-203ENST00000403076 CYSTM1Q9H1C7 97 aa9□□□□□ -0.97
SDC1-203ENST00000403076 H7BZZ5 65 aa8.98□□□□□ -0.97
SDC1-203ENST00000403076 SPANXA2-OT1Q8N9U9 137 aa8.98□□□□□ -0.97
SDC1-203ENST00000403076 A8MUN3 132 aa8.95□□□□□ -0.98
SDC1-203ENST00000403076 FAT4Q6V0I7 4981 aa8.95□□□□□ -0.98
SDC1-203ENST00000403076 DMAC1Q96GE9 116 aa8.92□□□□□ -0.98
SDC1-203ENST00000403076 MT1HP80294 61 aa8.89□□□□□ -0.99
SDC1-203ENST00000403076 M0R2T5 61 aa8.88□□□□□ -0.99
SDC1-203ENST00000403076 S4R3F8 94 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms