RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 C21orf62-AS1Q17RA5 79 aa6.83□□□□□ -1.32
VCX3A-202ENST00000398729 C8orf87E5RJ46 101 aa6.82□□□□□ -1.32
VCX3A-202ENST00000398729 A0A1B0GVX0 72 aa6.81□□□□□ -1.32
VCX3A-202ENST00000398729 ATXN8Q156A1 80 aa6.81□□□□□ -1.32
VCX3A-202ENST00000398729 J3KT08 172 aa6.8□□□□□ -1.32
VCX3A-202ENST00000398729 NAA38Q9BRA0 125 aaKnown RBP6.79□□□□□ -1.32
VCX3A-202ENST00000398729 FAM236DA0A1B0GTK5 79 aa6.78□□□□□ -1.32
VCX3A-202ENST00000398729 LOC105371267A0A1B0GV96 52 aa6.78□□□□□ -1.32
VCX3A-202ENST00000398729 JMJD7-PLA2G4BH0Y9G9 81 aa6.78□□□□□ -1.32
VCX3A-202ENST00000398729 FAM236CP0DP71 79 aa6.78□□□□□ -1.32
VCX3A-202ENST00000398729 Q6ZQT0 140 aa6.78□□□□□ -1.32
VCX3A-202ENST00000398729 SMIM6P0DI80 62 aa6.77□□□□□ -1.33
VCX3A-202ENST00000398729 KRTAP9-8Q9BYQ0 159 aa6.77□□□□□ -1.33
VCX3A-202ENST00000398729 RBM12B-AS1Q9P1G2 102 aa6.77□□□□□ -1.33
VCX3A-202ENST00000398729 A0A1B0GW54 56 aa6.75□□□□□ -1.33
VCX3A-202ENST00000398729 NDUFB1O75438 58 aa6.75□□□□□ -1.33
VCX3A-202ENST00000398729 LOC110117498A0A087WWA1 95 aa6.74□□□□□ -1.33
VCX3A-202ENST00000398729 HRES1P13985 223 aa6.74□□□□□ -1.33
VCX3A-202ENST00000398729 PDE6GP18545 87 aa6.74□□□□□ -1.33
VCX3A-202ENST00000398729 LYRM7Q5U5X0 104 aa6.74□□□□□ -1.33
VCX3A-202ENST00000398729 MPLKIPQ8TAP9 179 aa6.73□□□□□ -1.33
VCX3A-202ENST00000398729 A8MWP4 228 aa6.71□□□□□ -1.34
VCX3A-202ENST00000398729 ZCCHC13Q8WW36 166 aaKnown RBP6.71□□□□□ -1.34
VCX3A-202ENST00000398729 C14orf132Q9NPU4 83 aa6.71□□□□□ -1.34
VCX3A-202ENST00000398729 SYNE2Q8WXH0 6885 aaKnown RBP6.71□□□□□ -1.34
VCX3A-202ENST00000398729 TSTD3H0UI37 97 aa6.7□□□□□ -1.34
VCX3A-202ENST00000398729 Q8N9P0 234 aaPredicted RBP6.69□□□□□ -1.34
VCX3A-202ENST00000398729 BATFQ16520 125 aa6.68□□□□□ -1.34
VCX3A-202ENST00000398729 MTURNQ8N3F0 131 aa6.68□□□□□ -1.34
VCX3A-202ENST00000398729 C8orf17Q9NRJ1 99 aa6.68□□□□□ -1.34
VCX3A-202ENST00000398729 KRTAP19-1Q8IUB9 90 aa6.67□□□□□ -1.34
VCX3A-202ENST00000398729 MACF1Q9UPN3 7388 aaKnown RBP6.67□□□□□ -1.34
VCX3A-202ENST00000398729 IGKV3D-7A0A0C4DH55 119 aa6.66□□□□□ -1.34
VCX3A-202ENST00000398729 SPINK7P58062 85 aa6.66□□□□□ -1.34
VCX3A-202ENST00000398729 NREPQ16612 68 aa6.65□□□□□ -1.34
VCX3A-202ENST00000398729 LCE2BO14633 110 aa6.64□□□□□ -1.35
VCX3A-202ENST00000398729 Q6ZVQ6 151 aa6.63□□□□□ -1.35
VCX3A-202ENST00000398729 PRR15Q8IV56 129 aa6.63□□□□□ -1.35
VCX3A-202ENST00000398729 C9orf118A6NHY6 69 aa6.61□□□□□ -1.35
VCX3A-202ENST00000398729 H3BT86 120 aa6.61□□□□□ -1.35
VCX3A-202ENST00000398729 MT2AP02795 61 aa6.61□□□□□ -1.35
VCX3A-202ENST00000398729 A0A1W2PPM0 123 aa6.59□□□□□ -1.35
VCX3A-202ENST00000398729 TAX1BP3O14907 124 aa6.58□□□□□ -1.36
VCX3A-202ENST00000398729 TMEM254Q8TBM7 123 aa6.58□□□□□ -1.36
VCX3A-202ENST00000398729 MRPL34Q9BQ48 92 aaKnown RBP6.58□□□□□ -1.36
VCX3A-202ENST00000398729 KRTAP9-3Q9BYQ3 159 aa6.58□□□□□ -1.36
VCX3A-202ENST00000398729 MMP24-AS1A0A0U1RRL7 71 aa6.57□□□□□ -1.36
VCX3A-202ENST00000398729 WFDC13Q8IUB5 93 aa6.57□□□□□ -1.36
VCX3A-202ENST00000398729 MT1FP04733 61 aa6.56□□□□□ -1.36
VCX3A-202ENST00000398729 K7EQZ3 153 aa6.55□□□□□ -1.36
VCX3A-202ENST00000398729 KRTAP10-10P60014 251 aa6.55□□□□□ -1.36
VCX3A-202ENST00000398729 hDV103S1A0JD37 113 aa6.54□□□□□ -1.36
VCX3A-202ENST00000398729 BPY2O14599 106 aa6.53□□□□□ -1.36
VCX3A-202ENST00000398729 NDUFS5O43920 106 aa6.53□□□□□ -1.36
VCX3A-202ENST00000398729 SPCS1Q9Y6A9 102 aa6.5□□□□□ -1.37
VCX3A-202ENST00000398729 IGKV2D-30A0A075B6S6 120 aa6.44□□□□□ -1.38
VCX3A-202ENST00000398729 PCP4L1A6NKN8 68 aa6.44□□□□□ -1.38
VCX3A-202ENST00000398729 IGKV2-30P06310 120 aa6.44□□□□□ -1.38
VCX3A-202ENST00000398729 SMCPP49901 116 aaPredicted RBP6.44□□□□□ -1.38
VCX3A-202ENST00000398729 KRTAP19-6Q3LI70 58 aa6.44□□□□□ -1.38
VCX3A-202ENST00000398729 CASC2Q6XLA1 102 aa6.44□□□□□ -1.38
VCX3A-202ENST00000398729 Q8N9L7 120 aa6.44□□□□□ -1.38
VCX3A-202ENST00000398729 H1FX-AS1Q4G0G2 97 aa6.43□□□□□ -1.38
VCX3A-202ENST00000398729 C7orf65Q6ZTY9 151 aa6.43□□□□□ -1.38
VCX3A-202ENST00000398729 COL5A1-AS1Q5SY13 56 aa6.42□□□□□ -1.38
VCX3A-202ENST00000398729 Q5W150 140 aa6.42□□□□□ -1.38
VCX3A-202ENST00000398729 HCG22E2RYF7 251 aa6.41□□□□□ -1.38
VCX3A-202ENST00000398729 UBL5Q9BZL1 73 aa6.4□□□□□ -1.38
VCX3A-202ENST00000398729 KRTAP6-3Q3LI67 103 aa6.39□□□□□ -1.39
VCX3A-202ENST00000398729 LINC00846Q9NV44 126 aa6.38□□□□□ -1.39
VCX3A-202ENST00000398729 PRO0461Q9UI25 63 aa6.38□□□□□ -1.39
VCX3A-202ENST00000398729 K7EP34 96 aa6.37□□□□□ -1.39
VCX3A-202ENST00000398729 CXCL6P80162 114 aa6.37□□□□□ -1.39
VCX3A-202ENST00000398729 C4orf26Q17RF5 130 aa6.33□□□□□ -1.4
VCX3A-202ENST00000398729 NEBP20929 6669 aa6.33□□□□□ -1.4
VCX3A-202ENST00000398729 GTF2H5Q6ZYL4 71 aa6.31□□□□□ -1.4
VCX3A-202ENST00000398729 MUC12Q9UKN1 5478 aa6.31□□□□□ -1.4
VCX3A-202ENST00000398729 F8W1H4 67 aa6.27□□□□□ -1.41
VCX3A-202ENST00000398729 TP53AIP1Q9HCN2 124 aa6.25□□□□□ -1.41
VCX3A-202ENST00000398729 ETDBQ3ZM63 59 aa6.24□□□□□ -1.41
VCX3A-202ENST00000398729 C5orf47Q569G3 176 aa6.21□□□□□ -1.42
VCX3A-202ENST00000398729 C1orf64Q8NEQ6 169 aa6.21□□□□□ -1.42
VCX3A-202ENST00000398729 KRTAP3-1Q9BYR8 98 aa6.2□□□□□ -1.42
VCX3A-202ENST00000398729 S4R3F8 94 aa6.2□□□□□ -1.42
VCX3A-202ENST00000398729 FAM236AA0A1B0GUQ0 79 aa6.17□□□□□ -1.42
VCX3A-202ENST00000398729 FAM236BA0A1B0GV22 79 aa6.17□□□□□ -1.42
VCX3A-202ENST00000398729 CSAG1Q6PB30 78 aa6.16□□□□□ -1.42
VCX3A-202ENST00000398729 LCA10Q71F78 164 aa6.15□□□□□ -1.42
VCX3A-202ENST00000398729 ACYP1P07311 99 aa6.13□□□□□ -1.43
VCX3A-202ENST00000398729 CYP4F30PQ9H0H9 118 aa6.12□□□□□ -1.43
VCX3A-202ENST00000398729 TRAV22A0A0B4J277 110 aa6.1□□□□□ -1.43
VCX3A-202ENST00000398729 MDN1Q9NU22 5596 aa6.09□□□□□ -1.43
VCX3A-202ENST00000398729 LOC101927531A0A1B0GV80 90 aa6.08□□□□□ -1.44
VCX3A-202ENST00000398729 A0A1B0GV90 55 aa6.08□□□□□ -1.44
VCX3A-202ENST00000398729 FAM240AA0A1B0GVK7 77 aa6.08□□□□□ -1.44
VCX3A-202ENST00000398729 KRTAP20-1Q3LI63 56 aa6.08□□□□□ -1.44
VCX3A-202ENST00000398729 ATP5EP2Q5VTU8 51 aa6.08□□□□□ -1.44
VCX3A-202ENST00000398729 HIST1H4AP62805 103 aaKnown RBP6.06□□□□□ -1.44
VCX3A-202ENST00000398729 KMT2DO14686 5537 aa6.06□□□□□ -1.44
VCX3A-202ENST00000398729 SPRR2GQ9BYE4 73 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms