RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 ITPR1Q14643 2758 aa3.21□□□□□ -1.9
VPS13C-204ENST00000395898 H1FX-AS1Q4G0G2 97 aa3.21□□□□□ -1.9
VPS13C-204ENST00000395898 LAMA5O15230 3695 aa3.21□□□□□ -1.9
VPS13C-204ENST00000395898 UBR5O95071 2799 aaPredicted RBP3.2□□□□□ -1.9
VPS13C-204ENST00000395898 M0QZ58 72 aa3.2□□□□□ -1.9
VPS13C-204ENST00000395898 ZFHX4Q86UP3 3567 aa3.19□□□□□ -1.9
VPS13C-204ENST00000395898 KRTAP29-1A8MX34 341 aaPredicted RBP3.18□□□□□ -1.9
VPS13C-204ENST00000395898 PLAC4Q8WY50 150 aa3.18□□□□□ -1.9
VPS13C-204ENST00000395898 A0A087X002 238 aa3.18□□□□□ -1.9
VPS13C-204ENST00000395898 NBPF19A0A087WUL8 3843 aa3.18□□□□□ -1.9
VPS13C-204ENST00000395898 PANO1I0J062 215 aa3.17□□□□□ -1.9
VPS13C-204ENST00000395898 ADM2Q7Z4H4 148 aa3.17□□□□□ -1.9
VPS13C-204ENST00000395898 RELNP78509 3460 aa3.16□□□□□ -1.9
VPS13C-204ENST00000395898 PRAC1Q96KF2 57 aa3.16□□□□□ -1.9
VPS13C-204ENST00000395898 CELSR1Q9NYQ6 3014 aa3.15□□□□□ -1.9
VPS13C-204ENST00000395898 CELSR2Q9HCU4 2923 aa3.14□□□□□ -1.91
VPS13C-204ENST00000395898 SPATA8Q6RVD6 105 aa3.13□□□□□ -1.91
VPS13C-204ENST00000395898 CSMD1Q96PZ7 3565 aa3.13□□□□□ -1.91
VPS13C-204ENST00000395898 Q6ZRN7 208 aaPredicted RBP3.12□□□□□ -1.91
VPS13C-204ENST00000395898 FLNCQ14315 2725 aa3.12□□□□□ -1.91
VPS13C-204ENST00000395898 DMDP11532 3685 aa3.11□□□□□ -1.91
VPS13C-204ENST00000395898 NOTCH2NLQ7Z3S9 236 aa3.11□□□□□ -1.91
VPS13C-204ENST00000395898 H3BS24 57 aa3.11□□□□□ -1.91
VPS13C-204ENST00000395898 A8MUU9 505 aa3.1□□□□□ -1.91
VPS13C-204ENST00000395898 KRTAP21-3Q3LHN1 58 aa3.09□□□□□ -1.92
VPS13C-204ENST00000395898 DCHS2Q6V1P9 2916 aa3.09□□□□□ -1.92
VPS13C-204ENST00000395898 HIVEP1P15822 2718 aa3.08□□□□□ -1.92
VPS13C-204ENST00000395898 KRTAP13-1Q8IUC0 172 aa3.08□□□□□ -1.92
VPS13C-204ENST00000395898 KRTAP11-1Q8IUC1 163 aa3.08□□□□□ -1.92
VPS13C-204ENST00000395898 MUC3AQ02505 3323 aa3.08□□□□□ -1.92
VPS13C-204ENST00000395898 KRTAP7-1Q8IUC3 87 aa3.06□□□□□ -1.92
VPS13C-204ENST00000395898 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
VPS13C-204ENST00000395898 FBN2P35556 2912 aa3.05□□□□□ -1.92
VPS13C-204ENST00000395898 NIPBLQ6KC79 2804 aaeCLIP3.05□□□□□ -1.92
VPS13C-204ENST00000395898 C20orf166-AS1Q96NR2 134 aa3.04□□□□□ -1.92
VPS13C-204ENST00000395898 KRTAP13-2Q52LG2 175 aa3.04□□□□□ -1.92
VPS13C-204ENST00000395898 SPENQ96T58 3664 aaKnown RBP3.04□□□□□ -1.92
VPS13C-204ENST00000395898 ZANQ9Y493 2812 aa3.04□□□□□ -1.92
VPS13C-204ENST00000395898 SMG1Q96Q15 3661 aaKnown RBP3.03□□□□□ -1.92
VPS13C-204ENST00000395898 HRNRQ86YZ3 2850 aaPredicted RBP3.03□□□□□ -1.92
VPS13C-204ENST00000395898 A6NN06 94 aa3.02□□□□□ -1.93
VPS13C-204ENST00000395898 TNP1P09430 55 aa3.02□□□□□ -1.93
VPS13C-204ENST00000395898 SVEP1Q4LDE5 3571 aa3.02□□□□□ -1.93
VPS13C-204ENST00000395898 KRTAP16-1A8MUX0 517 aa3.02□□□□□ -1.93
VPS13C-204ENST00000395898 NF1P21359 2839 aa3.02□□□□□ -1.93
VPS13C-204ENST00000395898 A8MU10 97 aa3□□□□□ -1.93
VPS13C-204ENST00000395898 CUBNO60494 3623 aa3□□□□□ -1.93
VPS13C-204ENST00000395898 TENM1Q9UKZ4 2725 aa3□□□□□ -1.93
VPS13C-204ENST00000395898 ZFHX3Q15911 3703 aa2.99□□□□□ -1.93
VPS13C-204ENST00000395898 PP632Q6XCG6 107 aa2.97□□□□□ -1.93
VPS13C-204ENST00000395898 BSNQ9UPA5 3926 aa2.96□□□□□ -1.94
VPS13C-204ENST00000395898 TENM4Q6N022 2769 aa2.96□□□□□ -1.94
VPS13C-204ENST00000395898 MXRA5Q9NR99 2828 aa2.94□□□□□ -1.94
VPS13C-204ENST00000395898 TPRXLQ17RH7 258 aa2.93□□□□□ -1.94
VPS13C-204ENST00000395898 XP32Q5T750 250 aa2.92□□□□□ -1.94
VPS13C-204ENST00000395898 NDUFAF8A1L188 74 aa2.92□□□□□ -1.94
VPS13C-204ENST00000395898 KRTAP1-4P0C5Y4 121 aa2.91□□□□□ -1.94
VPS13C-204ENST00000395898 C10orf95Q9H7T3 257 aa2.9□□□□□ -1.95
VPS13C-204ENST00000395898 KRTAP10-8P60410 259 aa2.9□□□□□ -1.95
VPS13C-204ENST00000395898 TGP01266 2768 aa2.9□□□□□ -1.95
VPS13C-204ENST00000395898 CSMD2Q7Z408 3487 aa2.89□□□□□ -1.95
VPS13C-204ENST00000395898 PRO2289Q9P1D8 64 aa2.89□□□□□ -1.95
VPS13C-204ENST00000395898 PDZD2O15018 2839 aa2.88□□□□□ -1.95
VPS13C-204ENST00000395898 TENM3Q9P273 2699 aa2.86□□□□□ -1.95
VPS13C-204ENST00000395898 H0YAA0 97 aa2.86□□□□□ -1.95
VPS13C-204ENST00000395898 PKD1L1Q8TDX9 2849 aa2.86□□□□□ -1.95
VPS13C-204ENST00000395898 VPS13CQ709C8 3753 aa2.83□□□□□ -1.96
VPS13C-204ENST00000395898 VWFP04275 2813 aa2.83□□□□□ -1.96
VPS13C-204ENST00000395898 KRTAP13-3Q3SY46 172 aa2.82□□□□□ -1.96
VPS13C-204ENST00000395898 TRRAPQ9Y4A5 3859 aa2.82□□□□□ -1.96
VPS13C-204ENST00000395898 KRTAP10-10P60014 251 aa2.81□□□□□ -1.96
VPS13C-204ENST00000395898 A0A1B0GVY2 172 aa2.81□□□□□ -1.96
VPS13C-204ENST00000395898 P0C880 135 aa2.81□□□□□ -1.96
VPS13C-204ENST00000395898 TENM2Q9NT68 2774 aa2.81□□□□□ -1.96
VPS13C-204ENST00000395898 FBN1P35555 2871 aaKnown RBP2.76□□□□□ -1.97
VPS13C-204ENST00000395898 COL7A1Q02388 2944 aa2.74□□□□□ -1.97
VPS13C-204ENST00000395898 ZNF469Q96JG9 3925 aaPredicted RBP2.72□□□□□ -1.97
VPS13C-204ENST00000395898 AKAP9Q99996 3911 aa2.71□□□□□ -1.97
VPS13C-204ENST00000395898 CSMD3Q7Z407 3707 aa2.71□□□□□ -1.98
VPS13C-204ENST00000395898 MEGF8Q7Z7M0 2845 aa2.71□□□□□ -1.98
VPS13C-204ENST00000395898 KRTAP13-4Q3LI77 160 aa2.69□□□□□ -1.98
VPS13C-204ENST00000395898 KRTAP12-2P59991 146 aa2.68□□□□□ -1.98
VPS13C-204ENST00000395898 FBN3Q75N90 2809 aa2.66□□□□□ -1.98
VPS13C-204ENST00000395898 OTOGQ6ZRI0 2925 aa2.66□□□□□ -1.98
VPS13C-204ENST00000395898 ANK3Q12955 4377 aaKnown RBP2.66□□□□□ -1.98
VPS13C-204ENST00000395898 KRTAP12-1P59990 96 aa2.64□□□□□ -1.99
VPS13C-204ENST00000395898 SRRM2Q9UQ35 2752 aaKnown RBP2.63□□□□□ -1.99
VPS13C-204ENST00000395898 KRTAP3-1Q9BYR8 98 aa2.58□□□□□ -2
VPS13C-204ENST00000395898 HUWE1Q7Z6Z7 4374 aaKnown RBP2.58□□□□□ -2
VPS13C-204ENST00000395898 KRTAP15-1Q3LI76 137 aa2.55□□□□□ -2
VPS13C-204ENST00000395898 KRTAP10-6P60371 365 aaPredicted RBP2.53□□□□□ -2
VPS13C-204ENST00000395898 INE1O15225 51 aa2.48□□□□□ -2.01
VPS13C-204ENST00000395898 FRAS1Q86XX4 4008 aa2.48□□□□□ -2.01
VPS13C-204ENST00000395898 MT1HL1P0DM35 61 aa2.46□□□□□ -2.02
VPS13C-204ENST00000395898 KRTAP10-12P60413 245 aa2.46□□□□□ -2.02
VPS13C-204ENST00000395898 KRTAP3-3Q9BYR6 98 aa2.44□□□□□ -2.02
VPS13C-204ENST00000395898 KRTAP23-1A1A580 65 aa2.44□□□□□ -2.02
VPS13C-204ENST00000395898 ALMS1Q8TCU4 4167 aa2.43□□□□□ -2.02
VPS13C-204ENST00000395898 KMT2AQ03164 3969 aa2.43□□□□□ -2.02
VPS13C-204ENST00000395898 KRTAP3-2Q9BYR7 98 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 1278.1 ms