RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TNP1P09430 55 aa6.33□□□□□ -1.4
RTN3-206ENST00000377819 MGAQ8IWI9 3026 aa6.32□□□□□ -1.4
RTN3-206ENST00000377819 Q5XG85 94 aa6.32□□□□□ -1.4
RTN3-206ENST00000377819 LCE6AA0A183 80 aa6.31□□□□□ -1.4
RTN3-206ENST00000377819 NDUFAF8A1L188 74 aa6.3□□□□□ -1.4
RTN3-206ENST00000377819 A8MUU9 505 aa6.3□□□□□ -1.4
RTN3-206ENST00000377819 PRRC2CQ9Y520 2896 aaKnown RBP6.29□□□□□ -1.4
RTN3-206ENST00000377819 Q6ZR54 194 aa6.28□□□□□ -1.4
RTN3-206ENST00000377819 ADGRG4Q8IZF6 3080 aa6.27□□□□□ -1.41
RTN3-206ENST00000377819 UBR5O95071 2799 aaPredicted RBP6.26□□□□□ -1.41
RTN3-206ENST00000377819 KRTAP25-1Q3LHN0 102 aa6.24□□□□□ -1.41
RTN3-206ENST00000377819 KRTAP26-1Q6PEX3 210 aa6.24□□□□□ -1.41
RTN3-206ENST00000377819 ANK3Q12955 4377 aaKnown RBP6.23□□□□□ -1.41
RTN3-206ENST00000377819 SVEP1Q4LDE5 3571 aa6.23□□□□□ -1.41
RTN3-206ENST00000377819 KRTAP10-1P60331 282 aa6.23□□□□□ -1.41
RTN3-206ENST00000377819 C10orf95Q9H7T3 257 aa6.23□□□□□ -1.41
RTN3-206ENST00000377819 CSMD2Q7Z408 3487 aa6.2□□□□□ -1.42
RTN3-206ENST00000377819 CUBNO60494 3623 aa6.2□□□□□ -1.42
RTN3-206ENST00000377819 MAP1AP78559 2803 aaPredicted RBP6.2□□□□□ -1.42
RTN3-206ENST00000377819 FBN2P35556 2912 aa6.2□□□□□ -1.42
RTN3-206ENST00000377819 CELSR1Q9NYQ6 3014 aa6.2□□□□□ -1.42
RTN3-206ENST00000377819 CELSR2Q9HCU4 2923 aa6.19□□□□□ -1.42
RTN3-206ENST00000377819 CMYA5Q8N3K9 4069 aa6.19□□□□□ -1.42
RTN3-206ENST00000377819 GCN1Q92616 2671 aaKnown RBP6.18□□□□□ -1.42
RTN3-206ENST00000377819 LRBAP50851 2863 aa6.18□□□□□ -1.42
RTN3-206ENST00000377819 DNAH3Q8TD57 4116 aa6.18□□□□□ -1.42
RTN3-206ENST00000377819 KRTAP1-1Q07627 177 aa6.16□□□□□ -1.42
RTN3-206ENST00000377819 CSMD1Q96PZ7 3565 aa6.16□□□□□ -1.42
RTN3-206ENST00000377819 ASH1LQ9NR48 2969 aaKnown RBP6.15□□□□□ -1.43
RTN3-206ENST00000377819 CRYBG3Q68DQ2 2970 aa6.14□□□□□ -1.43
RTN3-206ENST00000377819 KRTAP10-2P60368 255 aa6.14□□□□□ -1.43
RTN3-206ENST00000377819 CYSTM1Q9H1C7 97 aa6.14□□□□□ -1.43
RTN3-206ENST00000377819 A8MU10 97 aa6.13□□□□□ -1.43
RTN3-206ENST00000377819 PP632Q6XCG6 107 aa6.12□□□□□ -1.43
RTN3-206ENST00000377819 KRTAP1-3Q8IUG1 177 aa6.12□□□□□ -1.43
RTN3-206ENST00000377819 UTP20O75691 2785 aaKnown RBP6.11□□□□□ -1.43
RTN3-206ENST00000377819 P0C880 135 aa6.1□□□□□ -1.43
RTN3-206ENST00000377819 KRTAP1-5Q9BYS1 174 aa6.1□□□□□ -1.43
RTN3-206ENST00000377819 PDZD2O15018 2839 aa6.09□□□□□ -1.43
RTN3-206ENST00000377819 KRTAP10-8P60410 259 aa6.08□□□□□ -1.44
RTN3-206ENST00000377819 KRTAP29-1A8MX34 341 aaPredicted RBP6.08□□□□□ -1.44
RTN3-206ENST00000377819 RPS29P62273 56 aaKnown RBP6.07□□□□□ -1.44
RTN3-206ENST00000377819 A0A087X002 238 aa6.07□□□□□ -1.44
RTN3-206ENST00000377819 TACC2O95359 2948 aa6.05□□□□□ -1.44
RTN3-206ENST00000377819 TENM4Q6N022 2769 aa6.05□□□□□ -1.44
RTN3-206ENST00000377819 ITPR2Q14571 2701 aa6.04□□□□□ -1.44
RTN3-206ENST00000377819 FLNCQ14315 2725 aa6.04□□□□□ -1.44
RTN3-206ENST00000377819 ANK2Q01484 3957 aa6.02□□□□□ -1.45
RTN3-206ENST00000377819 NOTCH2NLQ7Z3S9 236 aa6.01□□□□□ -1.45
RTN3-206ENST00000377819 A6NN06 94 aa6□□□□□ -1.45
RTN3-206ENST00000377819 TENM3Q9P273 2699 aa6□□□□□ -1.45
RTN3-206ENST00000377819 KRTAP11-1Q8IUC1 163 aa5.99□□□□□ -1.45
RTN3-206ENST00000377819 PRO2289Q9P1D8 64 aa5.94□□□□□ -1.46
RTN3-206ENST00000377819 KRTAP4-16G5E9R7 235 aaPredicted RBP5.94□□□□□ -1.46
RTN3-206ENST00000377819 DNAH1Q9P2D7 4330 aa5.9□□□□□ -1.46
RTN3-206ENST00000377819 MXRA5Q9NR99 2828 aa5.9□□□□□ -1.46
RTN3-206ENST00000377819 DYNC2H1Q8NCM8 4307 aaKnown RBP5.88□□□□□ -1.47
RTN3-206ENST00000377819 Q6ZRN7 208 aaPredicted RBP5.88□□□□□ -1.47
RTN3-206ENST00000377819 APCP25054 2843 aa5.86□□□□□ -1.47
RTN3-206ENST00000377819 COL12A1Q99715 3063 aa5.86□□□□□ -1.47
RTN3-206ENST00000377819 HIVEP1P15822 2718 aa5.82□□□□□ -1.48
RTN3-206ENST00000377819 KRTAP10-10P60014 251 aa5.81□□□□□ -1.48
RTN3-206ENST00000377819 NBEAL2Q6ZNJ1 2754 aa5.81□□□□□ -1.48
RTN3-206ENST00000377819 OTOGQ6ZRI0 2925 aa5.79□□□□□ -1.48
RTN3-206ENST00000377819 KRTAP13-2Q52LG2 175 aa5.78□□□□□ -1.48
RTN3-206ENST00000377819 TRRAPQ9Y4A5 3859 aa5.77□□□□□ -1.49
RTN3-206ENST00000377819 A0A1B0GVY2 172 aa5.76□□□□□ -1.49
RTN3-206ENST00000377819 ZANQ9Y493 2812 aa5.75□□□□□ -1.49
RTN3-206ENST00000377819 DNAH7Q8WXX0 4024 aa5.72□□□□□ -1.49
RTN3-206ENST00000377819 PRKDCP78527 4128 aaKnown RBP5.67□□□□□ -1.5
RTN3-206ENST00000377819 LYSTQ99698 3801 aa5.64□□□□□ -1.51
RTN3-206ENST00000377819 KRTAP13-1Q8IUC0 172 aa5.62□□□□□ -1.51
RTN3-206ENST00000377819 XP32Q5T750 250 aa5.61□□□□□ -1.51
RTN3-206ENST00000377819 TENM1Q9UKZ4 2725 aa5.6□□□□□ -1.51
RTN3-206ENST00000377819 DNAH6Q9C0G6 4158 aa5.6□□□□□ -1.51
RTN3-206ENST00000377819 CSMD3Q7Z407 3707 aa5.58□□□□□ -1.52
RTN3-206ENST00000377819 NIPBLQ6KC79 2804 aaeCLIP5.57□□□□□ -1.52
RTN3-206ENST00000377819 TPRXLQ17RH7 258 aa5.56□□□□□ -1.52
RTN3-206ENST00000377819 HUWE1Q7Z6Z7 4374 aaKnown RBP5.55□□□□□ -1.52
RTN3-206ENST00000377819 TENM2Q9NT68 2774 aa5.54□□□□□ -1.52
RTN3-206ENST00000377819 DNAH9Q9NYC9 4486 aa5.53□□□□□ -1.52
RTN3-206ENST00000377819 KRTAP7-1Q8IUC3 87 aa5.52□□□□□ -1.53
RTN3-206ENST00000377819 H0YAA0 97 aa5.51□□□□□ -1.53
RTN3-206ENST00000377819 FRAS1Q86XX4 4008 aa5.51□□□□□ -1.53
RTN3-206ENST00000377819 NF1P21359 2839 aa5.51□□□□□ -1.53
RTN3-206ENST00000377819 VWFP04275 2813 aa5.49□□□□□ -1.53
RTN3-206ENST00000377819 KRTAP21-3Q3LHN1 58 aa5.49□□□□□ -1.53
RTN3-206ENST00000377819 KRTAP12-2P59991 146 aa5.43□□□□□ -1.54
RTN3-206ENST00000377819 FBN1P35555 2871 aaKnown RBP5.43□□□□□ -1.54
RTN3-206ENST00000377819 VPS13DQ5THJ4 4388 aa5.41□□□□□ -1.54
RTN3-206ENST00000377819 HECTD4Q9Y4D8 3996 aa5.39□□□□□ -1.55
RTN3-206ENST00000377819 KRTAP1-4P0C5Y4 121 aa5.37□□□□□ -1.55
RTN3-206ENST00000377819 COL7A1Q02388 2944 aa5.37□□□□□ -1.55
RTN3-206ENST00000377819 DNAH2Q9P225 4427 aa5.37□□□□□ -1.55
RTN3-206ENST00000377819 SRRM2Q9UQ35 2752 aaKnown RBP5.36□□□□□ -1.55
RTN3-206ENST00000377819 DNAH17Q9UFH2 4485 aa5.36□□□□□ -1.55
RTN3-206ENST00000377819 KRTAP15-1Q3LI76 137 aa5.34□□□□□ -1.55
RTN3-206ENST00000377819 DNAH10Q8IVF4 4471 aa5.33□□□□□ -1.56
RTN3-206ENST00000377819 PLECQ15149 4684 aaKnown RBP5.33□□□□□ -1.56
RTN3-206ENST00000377819 STARD9Q9P2P6 4700 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms