RNA–Protein interactions for RNA: ENST00000373264.4

CDK9-201, Transcript of cyclin dependent kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK9, Length 2,463 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-201ENST00000373264 NDUFS5O43920 106 aa14□□□□□ -0.17
CDK9-201ENST00000373264 KRTAP10-1P60331 282 aa14□□□□□ -0.17
CDK9-201ENST00000373264 CDK2AP2O75956 126 aa13.97□□□□□ -0.17
CDK9-201ENST00000373264 PCOTHQ58A44 107 aa13.96□□□□□ -0.18
CDK9-201ENST00000373264 H3BPC8 53 aa13.93□□□□□ -0.18
CDK9-201ENST00000373264 VPS13BQ7Z7G8 4022 aa13.91□□□□□ -0.18
CDK9-201ENST00000373264 MRPL34Q9BQ48 92 aaKnown RBP13.9□□□□□ -0.18
CDK9-201ENST00000373264 KRTAP13-2Q52LG2 175 aa13.88□□□□□ -0.19
CDK9-201ENST00000373264 CD164Q04900 197 aa13.87□□□□□ -0.19
CDK9-201ENST00000373264 Q6ZSA8 131 aa13.87□□□□□ -0.19
CDK9-201ENST00000373264 SPANXA2-OT1Q8N9U9 137 aa13.86□□□□□ -0.19
CDK9-201ENST00000373264 TP53AIP1Q9HCN2 124 aa13.86□□□□□ -0.19
CDK9-201ENST00000373264 PKHD1P08F94 4074 aa13.86□□□□□ -0.19
CDK9-201ENST00000373264 Q5W150 140 aa13.82□□□□□ -0.2
CDK9-201ENST00000373264 PSPHP1O15172 72 aa13.81□□□□□ -0.2
CDK9-201ENST00000373264 SSBP3-AS1Q7Z2R9 100 aa13.8□□□□□ -0.2
CDK9-201ENST00000373264 BRK1Q8WUW1 75 aa13.8□□□□□ -0.2
CDK9-201ENST00000373264 Q1T7F1 81 aa13.79□□□□□ -0.2
CDK9-201ENST00000373264 IGLV7-46A0A075B6I9 117 aa13.76□□□□□ -0.21
CDK9-201ENST00000373264 KRTAP1-4P0C5Y4 121 aa13.73□□□□□ -0.21
CDK9-201ENST00000373264 SACSQ9NZJ4 4579 aa13.72□□□□□ -0.21
CDK9-201ENST00000373264 PRO0628Q9UI54 55 aa13.71□□□□□ -0.21
CDK9-201ENST00000373264 COA5Q86WW8 74 aa13.7□□□□□ -0.22
CDK9-201ENST00000373264 C1orf195Q5TG92 126 aa13.69□□□□□ -0.22
CDK9-201ENST00000373264 Q8N9P0 234 aaPredicted RBP13.69□□□□□ -0.22
CDK9-201ENST00000373264 A8MUN3 132 aa13.68□□□□□ -0.22
CDK9-201ENST00000373264 RETNLBQ9BQ08 111 aa13.68□□□□□ -0.22
CDK9-201ENST00000373264 KRTAP13-3Q3SY46 172 aa13.68□□□□□ -0.22
CDK9-201ENST00000373264 LINC00313P59037 77 aa13.62□□□□□ -0.23
CDK9-201ENST00000373264 PLA2G1BP04054 148 aaKnown RBP13.58□□□□□ -0.23
CDK9-201ENST00000373264 C8orf87E5RJ46 101 aa13.56□□□□□ -0.24
CDK9-201ENST00000373264 HRES1P13985 223 aa13.56□□□□□ -0.24
CDK9-201ENST00000373264 DYNC1H1Q14204 4646 aaKnown RBP13.56□□□□□ -0.24
CDK9-201ENST00000373264 Q5VV11 94 aa13.54□□□□□ -0.24
CDK9-201ENST00000373264 LOC101927531A0A1B0GV80 90 aa13.54□□□□□ -0.24
CDK9-201ENST00000373264 A8MU10 97 aa13.53□□□□□ -0.24
CDK9-201ENST00000373264 SMR3BP02814 79 aaPredicted RBP13.52□□□□□ -0.25
CDK9-201ENST00000373264 PRR15LQ9BU68 103 aa13.51□□□□□ -0.25
CDK9-201ENST00000373264 FAT1Q14517 4588 aa13.5□□□□□ -0.25
CDK9-201ENST00000373264 KRTAP16-1A8MUX0 517 aa13.5□□□□□ -0.25
CDK9-201ENST00000373264 TYMSOSQ8TAI1 123 aa13.49□□□□□ -0.25
CDK9-201ENST00000373264 SPAG11AQ6PDA7 123 aa13.48□□□□□ -0.25
CDK9-201ENST00000373264 V9GYY9 64 aa13.47□□□□□ -0.25
CDK9-201ENST00000373264 PRR26Q8N8Z3 221 aa13.46□□□□□ -0.26
CDK9-201ENST00000373264 LIMD2Q9BT23 127 aa13.42□□□□□ -0.26
CDK9-201ENST00000373264 KRTAP21-3Q3LHN1 58 aa13.41□□□□□ -0.26
CDK9-201ENST00000373264 C4orf48Q5BLP8 95 aa13.41□□□□□ -0.26
CDK9-201ENST00000373264 CHKB-CPT1BH3BT56 60 aa13.4□□□□□ -0.26
CDK9-201ENST00000373264 FAM229AH3BQW9 127 aa13.39□□□□□ -0.27
CDK9-201ENST00000373264 APOBP04114 4563 aaKnown RBP13.36□□□□□ -0.27
CDK9-201ENST00000373264 IGKV2-30P06310 120 aa13.34□□□□□ -0.27
CDK9-201ENST00000373264 SPINK1P00995 79 aa13.32□□□□□ -0.28
CDK9-201ENST00000373264 KMT2CQ8NEZ4 4911 aaKnown RBP13.31□□□□□ -0.28
CDK9-201ENST00000373264 IGKV2D-30A0A075B6S6 120 aa13.3□□□□□ -0.28
CDK9-201ENST00000373264 LINC00304Q8N9R0 145 aa13.29□□□□□ -0.28
CDK9-201ENST00000373264 RYR2Q92736 4967 aa13.29□□□□□ -0.28
CDK9-201ENST00000373264 LINC01558Q9Y6Z2 57 aa13.27□□□□□ -0.29
CDK9-201ENST00000373264 A0A1B0GVY2 172 aa13.27□□□□□ -0.29
CDK9-201ENST00000373264 Q75L30 129 aa13.26□□□□□ -0.29
CDK9-201ENST00000373264 DMAC1Q96GE9 116 aa13.24□□□□□ -0.29
CDK9-201ENST00000373264 ACYP2P14621 99 aa13.23□□□□□ -0.29
CDK9-201ENST00000373264 LCA10Q71F78 164 aa13.22□□□□□ -0.29
CDK9-201ENST00000373264 A6NED7 52 aa13.21□□□□□ -0.29
CDK9-201ENST00000373264 KRTAP10-4P60372 401 aaPredicted RBP13.21□□□□□ -0.29
CDK9-201ENST00000373264 PKHD1L1Q86WI1 4243 aa13.18□□□□□ -0.3
CDK9-201ENST00000373264 SPINK7P58062 85 aa13.16□□□□□ -0.3
CDK9-201ENST00000373264 C9orf92A6NGG3 77 aa13.14□□□□□ -0.31
CDK9-201ENST00000373264 SPTSSBQ8NFR3 76 aa13.07□□□□□ -0.32
CDK9-201ENST00000373264 RPS29P62273 56 aaKnown RBP13.05□□□□□ -0.32
CDK9-201ENST00000373264 C7orf65Q6ZTY9 151 aa13.04□□□□□ -0.32
CDK9-201ENST00000373264 LRP1Q07954 4544 aaKnown RBP13.03□□□□□ -0.32
CDK9-201ENST00000373264 Q8N1X5 172 aa13.02□□□□□ -0.32
CDK9-201ENST00000373264 PMAIP1Q13794 54 aa12.99□□□□□ -0.33
CDK9-201ENST00000373264 CDC42SE1Q9NRR8 79 aa12.98□□□□□ -0.33
CDK9-201ENST00000373264 FLG2Q5D862 2391 aaPredicted RBP12.94□□□□□ -0.34
CDK9-201ENST00000373264 RYR3Q15413 4870 aa12.89□□□□□ -0.35
CDK9-201ENST00000373264 A0A1B0GU69 56 aa12.88□□□□□ -0.35
CDK9-201ENST00000373264 ATP11AUNQ6ZP68 121 aa12.87□□□□□ -0.35
CDK9-201ENST00000373264 A8MUU9 505 aa12.87□□□□□ -0.35
CDK9-201ENST00000373264 C20orf166-AS1Q96NR2 134 aa12.87□□□□□ -0.35
CDK9-201ENST00000373264 HSPG2P98160 4391 aa12.86□□□□□ -0.35
CDK9-201ENST00000373264 TNXBP22105 4242 aa12.84□□□□□ -0.35
CDK9-201ENST00000373264 FAT3Q8TDW7 4589 aa12.81□□□□□ -0.36
CDK9-201ENST00000373264 A6NN06 94 aa12.77□□□□□ -0.37
CDK9-201ENST00000373264 KRTAP17-1Q9BYP8 105 aa12.76□□□□□ -0.37
CDK9-201ENST00000373264 KRTAP3-1Q9BYR8 98 aa12.76□□□□□ -0.37
CDK9-201ENST00000373264 DMBT1Q9UGM3 2413 aaPredicted RBP12.72□□□□□ -0.37
CDK9-201ENST00000373264 MYCBP2O75592 4640 aa12.72□□□□□ -0.37
CDK9-201ENST00000373264 Q5VSD8 79 aa12.69□□□□□ -0.38
CDK9-201ENST00000373264 RYR1P21817 5038 aa12.68□□□□□ -0.38
CDK9-201ENST00000373264 KIAA1109Q2LD37 5005 aa12.66□□□□□ -0.38
CDK9-201ENST00000373264 KRTAP10-8P60410 259 aa12.63□□□□□ -0.39
CDK9-201ENST00000373264 SPATA8Q6RVD6 105 aa12.59□□□□□ -0.39
CDK9-201ENST00000373264 KTN1-AS1Q86SY8 53 aa12.59□□□□□ -0.39
CDK9-201ENST00000373264 MIR22HGQ0VDD5 57 aa12.57□□□□□ -0.4
CDK9-201ENST00000373264 UQCR11O14957 56 aa12.57□□□□□ -0.4
CDK9-201ENST00000373264 EPPK1P58107 5090 aaKnown RBP12.44□□□□□ -0.42
CDK9-201ENST00000373264 SEC61GP60059 68 aa12.43□□□□□ -0.42
CDK9-201ENST00000373264 COX6B2Q6YFQ2 88 aa12.42□□□□□ -0.42
CDK9-201ENST00000373264 XP32Q5T750 250 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms