RNA–Protein interactions for RNA: ENST00000370828.3

GPC4-201, Transcript of glypican 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC4, Length 4,960 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4-201ENST00000370828 WDFY3Q8IZQ1 3526 aa7.42□□□□□ -1.22
GPC4-201ENST00000370828 LOC400499M0QZD8 3231 aa7.42□□□□□ -1.22
GPC4-201ENST00000370828 COL12A1Q99715 3063 aa7.4□□□□□ -1.22
GPC4-201ENST00000370828 DMXL1Q9Y485 3027 aa7.36□□□□□ -1.23
GPC4-201ENST00000370828 COX6B2Q6YFQ2 88 aa7.35□□□□□ -1.23
GPC4-201ENST00000370828 HIVEP1P15822 2718 aa7.35□□□□□ -1.23
GPC4-201ENST00000370828 S4R3F8 94 aa7.33□□□□□ -1.24
GPC4-201ENST00000370828 FLNCQ14315 2725 aa7.33□□□□□ -1.24
GPC4-201ENST00000370828 UTP20O75691 2785 aaKnown RBP7.33□□□□□ -1.24
GPC4-201ENST00000370828 CELSR2Q9HCU4 2923 aa7.32□□□□□ -1.24
GPC4-201ENST00000370828 DCHS1Q96JQ0 3298 aa7.31□□□□□ -1.24
GPC4-201ENST00000370828 PLAC4Q8WY50 150 aa7.3□□□□□ -1.24
GPC4-201ENST00000370828 IGSF10Q6WRI0 2623 aa7.28□□□□□ -1.24
GPC4-201ENST00000370828 TNRC18O15417 2968 aaPredicted RBP7.26□□□□□ -1.25
GPC4-201ENST00000370828 ZANQ9Y493 2812 aa7.25□□□□□ -1.25
GPC4-201ENST00000370828 Q6ZSA8 131 aa7.23□□□□□ -1.25
GPC4-201ENST00000370828 ASPMQ8IZT6 3477 aa7.23□□□□□ -1.25
GPC4-201ENST00000370828 R4GN34 69 aa7.21□□□□□ -1.25
GPC4-201ENST00000370828 KRTAP13-1Q8IUC0 172 aa7.17□□□□□ -1.26
GPC4-201ENST00000370828 FBN2P35556 2912 aa7.16□□□□□ -1.26
GPC4-201ENST00000370828 KRTAP10-2P60368 255 aa7.16□□□□□ -1.26
GPC4-201ENST00000370828 DCHS2Q6V1P9 2916 aa7.16□□□□□ -1.26
GPC4-201ENST00000370828 NIPBLQ6KC79 2804 aaeCLIP7.16□□□□□ -1.26
GPC4-201ENST00000370828 KRTAP10-1P60331 282 aa7.15□□□□□ -1.27
GPC4-201ENST00000370828 ZFHX4Q86UP3 3567 aa7.14□□□□□ -1.27
GPC4-201ENST00000370828 M0QZ58 72 aa7.13□□□□□ -1.27
GPC4-201ENST00000370828 ITPR2Q14571 2701 aa7.12□□□□□ -1.27
GPC4-201ENST00000370828 NF1P21359 2839 aa7.1□□□□□ -1.27
GPC4-201ENST00000370828 HRNRQ86YZ3 2850 aaPredicted RBP7.09□□□□□ -1.27
GPC4-201ENST00000370828 MUC3AQ02505 3323 aa7.08□□□□□ -1.28
GPC4-201ENST00000370828 P0C880 135 aa7.08□□□□□ -1.28
GPC4-201ENST00000370828 KRTAP13-2Q52LG2 175 aa7.06□□□□□ -1.28
GPC4-201ENST00000370828 RELNP78509 3460 aa7.05□□□□□ -1.28
GPC4-201ENST00000370828 LAMA5O15230 3695 aa7.04□□□□□ -1.28
GPC4-201ENST00000370828 Q6ZRN7 208 aaPredicted RBP7.04□□□□□ -1.28
GPC4-201ENST00000370828 C10orf95Q9H7T3 257 aa7.03□□□□□ -1.28
GPC4-201ENST00000370828 H0YAA0 97 aa7.02□□□□□ -1.29
GPC4-201ENST00000370828 CRYBG3Q68DQ2 2970 aa7.02□□□□□ -1.29
GPC4-201ENST00000370828 DMDP11532 3685 aa7.01□□□□□ -1.29
GPC4-201ENST00000370828 PP632Q6XCG6 107 aa6.99□□□□□ -1.29
GPC4-201ENST00000370828 KMT2BQ9UMN6 2715 aaPredicted RBP6.98□□□□□ -1.29
GPC4-201ENST00000370828 CSMD1Q96PZ7 3565 aa6.95□□□□□ -1.3
GPC4-201ENST00000370828 SMG1Q96Q15 3661 aaKnown RBP6.9□□□□□ -1.3
GPC4-201ENST00000370828 MXRA5Q9NR99 2828 aa6.88□□□□□ -1.31
GPC4-201ENST00000370828 CUBNO60494 3623 aa6.87□□□□□ -1.31
GPC4-201ENST00000370828 TGP01266 2768 aa6.86□□□□□ -1.31
GPC4-201ENST00000370828 CELSR1Q9NYQ6 3014 aa6.84□□□□□ -1.31
GPC4-201ENST00000370828 RPS29P62273 56 aaKnown RBP6.84□□□□□ -1.31
GPC4-201ENST00000370828 SVEP1Q4LDE5 3571 aa6.81□□□□□ -1.32
GPC4-201ENST00000370828 M0R2T5 61 aa6.8□□□□□ -1.32
GPC4-201ENST00000370828 Q5VSD8 79 aa6.79□□□□□ -1.32
GPC4-201ENST00000370828 PDZD2O15018 2839 aa6.78□□□□□ -1.32
GPC4-201ENST00000370828 TENM3Q9P273 2699 aa6.77□□□□□ -1.33
GPC4-201ENST00000370828 KRTAP13-3Q3SY46 172 aa6.76□□□□□ -1.33
GPC4-201ENST00000370828 TENM4Q6N022 2769 aa6.73□□□□□ -1.33
GPC4-201ENST00000370828 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
GPC4-201ENST00000370828 TNP1P09430 55 aa6.66□□□□□ -1.34
GPC4-201ENST00000370828 SPENQ96T58 3664 aaKnown RBP6.66□□□□□ -1.34
GPC4-201ENST00000370828 KRTAP10-8P60410 259 aa6.65□□□□□ -1.34
GPC4-201ENST00000370828 TENM1Q9UKZ4 2725 aa6.6□□□□□ -1.35
GPC4-201ENST00000370828 KRTAP15-1Q3LI76 137 aa6.58□□□□□ -1.36
GPC4-201ENST00000370828 TPRXLQ17RH7 258 aa6.58□□□□□ -1.36
GPC4-201ENST00000370828 PRO2289Q9P1D8 64 aa6.56□□□□□ -1.36
GPC4-201ENST00000370828 INE1O15225 51 aa6.55□□□□□ -1.36
GPC4-201ENST00000370828 PKD1L1Q8TDX9 2849 aa6.52□□□□□ -1.37
GPC4-201ENST00000370828 KRTAP12-2P59991 146 aa6.48□□□□□ -1.37
GPC4-201ENST00000370828 VWFP04275 2813 aa6.48□□□□□ -1.37
GPC4-201ENST00000370828 XP32Q5T750 250 aa6.48□□□□□ -1.37
GPC4-201ENST00000370828 TENM2Q9NT68 2774 aa6.43□□□□□ -1.38
GPC4-201ENST00000370828 SRRM2Q9UQ35 2752 aaKnown RBP6.43□□□□□ -1.38
GPC4-201ENST00000370828 FBN1P35555 2871 aaKnown RBP6.42□□□□□ -1.38
GPC4-201ENST00000370828 KRTAP3-1Q9BYR8 98 aa6.39□□□□□ -1.39
GPC4-201ENST00000370828 KRTAP23-1A1A580 65 aa6.38□□□□□ -1.39
GPC4-201ENST00000370828 CSMD2Q7Z408 3487 aa6.37□□□□□ -1.39
GPC4-201ENST00000370828 KRTAP12-1P59990 96 aa6.35□□□□□ -1.39
GPC4-201ENST00000370828 FBN3Q75N90 2809 aa6.33□□□□□ -1.4
GPC4-201ENST00000370828 KRTAP13-4Q3LI77 160 aa6.32□□□□□ -1.4
GPC4-201ENST00000370828 A0A1B0GVY2 172 aa6.26□□□□□ -1.41
GPC4-201ENST00000370828 KRTAP10-6P60371 365 aaPredicted RBP6.25□□□□□ -1.41
GPC4-201ENST00000370828 MEGF8Q7Z7M0 2845 aa6.24□□□□□ -1.41
GPC4-201ENST00000370828 NBPF19A0A087WUL8 3843 aa6.24□□□□□ -1.41
GPC4-201ENST00000370828 OTOGQ6ZRI0 2925 aa6.22□□□□□ -1.41
GPC4-201ENST00000370828 ZFHX3Q15911 3703 aa6.2□□□□□ -1.42
GPC4-201ENST00000370828 BSNQ9UPA5 3926 aa6.18□□□□□ -1.42
GPC4-201ENST00000370828 COL7A1Q02388 2944 aa6.17□□□□□ -1.42
GPC4-201ENST00000370828 VPS13CQ709C8 3753 aa6.07□□□□□ -1.44
GPC4-201ENST00000370828 TRRAPQ9Y4A5 3859 aa6.04□□□□□ -1.44
GPC4-201ENST00000370828 KRTAP3-2Q9BYR7 98 aa6.03□□□□□ -1.44
GPC4-201ENST00000370828 KRTAP3-3Q9BYR6 98 aa5.97□□□□□ -1.45
GPC4-201ENST00000370828 KRTAP10-10P60014 251 aa5.95□□□□□ -1.46
GPC4-201ENST00000370828 ANK3Q12955 4377 aaKnown RBP5.87□□□□□ -1.47
GPC4-201ENST00000370828 CSMD3Q7Z407 3707 aa5.85□□□□□ -1.47
GPC4-201ENST00000370828 ZNF469Q96JG9 3925 aaPredicted RBP5.79□□□□□ -1.48
GPC4-201ENST00000370828 AKAP9Q99996 3911 aa5.58□□□□□ -1.52
GPC4-201ENST00000370828 LORP23490 312 aaPredicted RBP5.58□□□□□ -1.52
GPC4-201ENST00000370828 HUWE1Q7Z6Z7 4374 aaKnown RBP5.58□□□□□ -1.52
GPC4-201ENST00000370828 MT1HL1P0DM35 61 aa5.51□□□□□ -1.53
GPC4-201ENST00000370828 KRTAP10-4P60372 401 aaPredicted RBP5.5□□□□□ -1.53
GPC4-201ENST00000370828 LCE3AQ5TA76 89 aa5.44□□□□□ -1.54
GPC4-201ENST00000370828 KRTAP10-12P60413 245 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms