RNA–Protein interactions for RNA: ENST00000369984.4

HCFC1-202, Transcript of host cell factor C1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HCFC1, Length 8,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-202ENST00000369984 CRYBG3Q68DQ2 2970 aa7.18□□□□□ -1.26
HCFC1-202ENST00000369984 UBR5O95071 2799 aaPredicted RBP7.18□□□□□ -1.26
HCFC1-202ENST00000369984 DMXL2Q8TDJ6 3036 aa7.17□□□□□ -1.26
HCFC1-202ENST00000369984 CFAP47Q6ZTR5 3102 aa7.16□□□□□ -1.26
HCFC1-202ENST00000369984 NOTCH2NLQ7Z3S9 236 aa7.16□□□□□ -1.26
HCFC1-202ENST00000369984 COL12A1Q99715 3063 aa7.15□□□□□ -1.27
HCFC1-202ENST00000369984 TACC2O95359 2948 aa7.13□□□□□ -1.27
HCFC1-202ENST00000369984 BOD1L1Q8NFC6 3051 aa7.12□□□□□ -1.27
HCFC1-202ENST00000369984 NBEAQ8NFP9 2946 aa7.11□□□□□ -1.27
HCFC1-202ENST00000369984 SPTBN5Q9NRC6 3674 aaKnown RBP7.09□□□□□ -1.27
HCFC1-202ENST00000369984 P0C880 135 aa7.06□□□□□ -1.28
HCFC1-202ENST00000369984 WDFY3Q8IZQ1 3526 aa7.05□□□□□ -1.28
HCFC1-202ENST00000369984 RPS29P62273 56 aaKnown RBP7.05□□□□□ -1.28
HCFC1-202ENST00000369984 PP632Q6XCG6 107 aa7.03□□□□□ -1.28
HCFC1-202ENST00000369984 ADGRG4Q8IZF6 3080 aa7.02□□□□□ -1.29
HCFC1-202ENST00000369984 KRTAP11-1Q8IUC1 163 aa7.01□□□□□ -1.29
HCFC1-202ENST00000369984 ZZEF1O43149 2961 aa7□□□□□ -1.29
HCFC1-202ENST00000369984 HIVEP1P15822 2718 aa7□□□□□ -1.29
HCFC1-202ENST00000369984 ATMQ13315 3056 aa6.99□□□□□ -1.29
HCFC1-202ENST00000369984 DMXL1Q9Y485 3027 aa6.96□□□□□ -1.3
HCFC1-202ENST00000369984 MYO15AQ9UKN7 3530 aa6.95□□□□□ -1.3
HCFC1-202ENST00000369984 CELSR2Q9HCU4 2923 aa6.91□□□□□ -1.3
HCFC1-202ENST00000369984 TNRC18O15417 2968 aaPredicted RBP6.89□□□□□ -1.31
HCFC1-202ENST00000369984 KRTAP13-2Q52LG2 175 aa6.88□□□□□ -1.31
HCFC1-202ENST00000369984 KRTAP7-1Q8IUC3 87 aa6.87□□□□□ -1.31
HCFC1-202ENST00000369984 Q6ZRN7 208 aaPredicted RBP6.86□□□□□ -1.31
HCFC1-202ENST00000369984 KRTAP10-8P60410 259 aa6.85□□□□□ -1.31
HCFC1-202ENST00000369984 ASPMQ8IZT6 3477 aa6.85□□□□□ -1.31
HCFC1-202ENST00000369984 KRTAP13-1Q8IUC0 172 aa6.83□□□□□ -1.32
HCFC1-202ENST00000369984 PRO2289Q9P1D8 64 aa6.83□□□□□ -1.32
HCFC1-202ENST00000369984 EYSQ5T1H1 3165 aa6.82□□□□□ -1.32
HCFC1-202ENST00000369984 LAMA5O15230 3695 aa6.8□□□□□ -1.32
HCFC1-202ENST00000369984 DCHS1Q96JQ0 3298 aa6.76□□□□□ -1.33
HCFC1-202ENST00000369984 LOC400499M0QZD8 3231 aa6.76□□□□□ -1.33
HCFC1-202ENST00000369984 TENM1Q9UKZ4 2725 aa6.75□□□□□ -1.33
HCFC1-202ENST00000369984 FLNCQ14315 2725 aa6.75□□□□□ -1.33
HCFC1-202ENST00000369984 TENM3Q9P273 2699 aa6.74□□□□□ -1.33
HCFC1-202ENST00000369984 NBPF19A0A087WUL8 3843 aa6.74□□□□□ -1.33
HCFC1-202ENST00000369984 DCHS2Q6V1P9 2916 aa6.72□□□□□ -1.33
HCFC1-202ENST00000369984 CELSR1Q9NYQ6 3014 aa6.72□□□□□ -1.33
HCFC1-202ENST00000369984 NF1P21359 2839 aa6.71□□□□□ -1.34
HCFC1-202ENST00000369984 H0YAA0 97 aa6.68□□□□□ -1.34
HCFC1-202ENST00000369984 FBN2P35556 2912 aa6.67□□□□□ -1.34
HCFC1-202ENST00000369984 NIPBLQ6KC79 2804 aaeCLIP6.66□□□□□ -1.34
HCFC1-202ENST00000369984 TGP01266 2768 aa6.65□□□□□ -1.34
HCFC1-202ENST00000369984 CSMD1Q96PZ7 3565 aa6.64□□□□□ -1.35
HCFC1-202ENST00000369984 KRTAP21-3Q3LHN1 58 aa6.61□□□□□ -1.35
HCFC1-202ENST00000369984 A0A1B0GVY2 172 aa6.61□□□□□ -1.35
HCFC1-202ENST00000369984 ZANQ9Y493 2812 aa6.61□□□□□ -1.35
HCFC1-202ENST00000369984 ZFHX4Q86UP3 3567 aa6.59□□□□□ -1.35
HCFC1-202ENST00000369984 XP32Q5T750 250 aa6.58□□□□□ -1.36
HCFC1-202ENST00000369984 HRNRQ86YZ3 2850 aaPredicted RBP6.57□□□□□ -1.36
HCFC1-202ENST00000369984 SPENQ96T58 3664 aaKnown RBP6.56□□□□□ -1.36
HCFC1-202ENST00000369984 RELNP78509 3460 aa6.56□□□□□ -1.36
HCFC1-202ENST00000369984 KRTAP10-10P60014 251 aa6.54□□□□□ -1.36
HCFC1-202ENST00000369984 PDZD2O15018 2839 aa6.54□□□□□ -1.36
HCFC1-202ENST00000369984 DMDP11532 3685 aa6.51□□□□□ -1.37
HCFC1-202ENST00000369984 SMG1Q96Q15 3661 aaKnown RBP6.51□□□□□ -1.37
HCFC1-202ENST00000369984 MXRA5Q9NR99 2828 aa6.47□□□□□ -1.37
HCFC1-202ENST00000369984 KRTAP1-4P0C5Y4 121 aa6.46□□□□□ -1.38
HCFC1-202ENST00000369984 TPRXLQ17RH7 258 aa6.43□□□□□ -1.38
HCFC1-202ENST00000369984 TENM4Q6N022 2769 aa6.43□□□□□ -1.38
HCFC1-202ENST00000369984 VWFP04275 2813 aa6.4□□□□□ -1.39
HCFC1-202ENST00000369984 SRRM2Q9UQ35 2752 aaKnown RBP6.36□□□□□ -1.39
HCFC1-202ENST00000369984 PKD1L1Q8TDX9 2849 aa6.35□□□□□ -1.39
HCFC1-202ENST00000369984 KRTAP12-2P59991 146 aa6.3□□□□□ -1.4
HCFC1-202ENST00000369984 ZFHX3Q15911 3703 aa6.29□□□□□ -1.4
HCFC1-202ENST00000369984 SVEP1Q4LDE5 3571 aa6.29□□□□□ -1.4
HCFC1-202ENST00000369984 KRTAP13-3Q3SY46 172 aa6.28□□□□□ -1.4
HCFC1-202ENST00000369984 CUBNO60494 3623 aa6.25□□□□□ -1.41
HCFC1-202ENST00000369984 TENM2Q9NT68 2774 aa6.21□□□□□ -1.42
HCFC1-202ENST00000369984 VPS13CQ709C8 3753 aa6.2□□□□□ -1.42
HCFC1-202ENST00000369984 KRTAP13-4Q3LI77 160 aa6.18□□□□□ -1.42
HCFC1-202ENST00000369984 KRTAP15-1Q3LI76 137 aa6.11□□□□□ -1.43
HCFC1-202ENST00000369984 COL7A1Q02388 2944 aa6.11□□□□□ -1.43
HCFC1-202ENST00000369984 INE1O15225 51 aa6.1□□□□□ -1.43
HCFC1-202ENST00000369984 KRTAP12-1P59990 96 aa6.09□□□□□ -1.43
HCFC1-202ENST00000369984 MEGF8Q7Z7M0 2845 aa6.05□□□□□ -1.44
HCFC1-202ENST00000369984 TRRAPQ9Y4A5 3859 aa6.04□□□□□ -1.44
HCFC1-202ENST00000369984 MUC3AQ02505 3323 aa5.99□□□□□ -1.45
HCFC1-202ENST00000369984 BSNQ9UPA5 3926 aa5.98□□□□□ -1.45
HCFC1-202ENST00000369984 CSMD3Q7Z407 3707 aa5.95□□□□□ -1.46
HCFC1-202ENST00000369984 FBN1P35555 2871 aaKnown RBP5.94□□□□□ -1.46
HCFC1-202ENST00000369984 AKAP9Q99996 3911 aa5.93□□□□□ -1.46
HCFC1-202ENST00000369984 FBN3Q75N90 2809 aa5.93□□□□□ -1.46
HCFC1-202ENST00000369984 CSMD2Q7Z408 3487 aa5.92□□□□□ -1.46
HCFC1-202ENST00000369984 KRTAP3-1Q9BYR8 98 aa5.86□□□□□ -1.47
HCFC1-202ENST00000369984 CRCT1Q9UGL9 99 aa5.85□□□□□ -1.47
HCFC1-202ENST00000369984 OTOGQ6ZRI0 2925 aa5.82□□□□□ -1.48
HCFC1-202ENST00000369984 KRTAP10-6P60371 365 aaPredicted RBP5.75□□□□□ -1.49
HCFC1-202ENST00000369984 KRTAP10-12P60413 245 aa5.66□□□□□ -1.5
HCFC1-202ENST00000369984 ZNF469Q96JG9 3925 aaPredicted RBP5.56□□□□□ -1.52
HCFC1-202ENST00000369984 ANK3Q12955 4377 aaKnown RBP5.55□□□□□ -1.52
HCFC1-202ENST00000369984 KRTAP3-3Q9BYR6 98 aa5.5□□□□□ -1.53
HCFC1-202ENST00000369984 KRTAP3-2Q9BYR7 98 aa5.49□□□□□ -1.53
HCFC1-202ENST00000369984 ALMS1Q8TCU4 4167 aa5.47□□□□□ -1.53
HCFC1-202ENST00000369984 KRTAP12-3P60328 96 aa5.47□□□□□ -1.53
HCFC1-202ENST00000369984 KRTAP10-5P60370 271 aa5.46□□□□□ -1.53
HCFC1-202ENST00000369984 HUWE1Q7Z6Z7 4374 aaKnown RBP5.44□□□□□ -1.54
HCFC1-202ENST00000369984 KRTAP23-1A1A580 65 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms