RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 H0Y9P7 68 aa8.27□□□□□ -1.09
USF1-202ENST00000368020 OXTP01178 125 aa8.27□□□□□ -1.09
USF1-202ENST00000368020 Q5XG85 94 aa8.27□□□□□ -1.09
USF1-202ENST00000368020 EPPK1P58107 5090 aaKnown RBP8.26□□□□□ -1.09
USF1-202ENST00000368020 TRAV22A0A0B4J277 110 aa8.26□□□□□ -1.09
USF1-202ENST00000368020 SMIM26A0A096LP01 95 aa8.25□□□□□ -1.09
USF1-202ENST00000368020 IGHV6-1A0A0B4J1U7 121 aa8.24□□□□□ -1.09
USF1-202ENST00000368020 LINC00208Q96KT6 92 aa8.24□□□□□ -1.09
USF1-202ENST00000368020 LRP1BQ9NZR2 4599 aa8.23□□□□□ -1.09
USF1-202ENST00000368020 MRPL34Q9BQ48 92 aaKnown RBP8.22□□□□□ -1.09
USF1-202ENST00000368020 SPANXA2-OT1Q8N9U9 137 aa8.21□□□□□ -1.09
USF1-202ENST00000368020 CYP4F30PQ9H0H9 118 aa8.21□□□□□ -1.09
USF1-202ENST00000368020 DYNC1H1Q14204 4646 aaKnown RBP8.21□□□□□ -1.1
USF1-202ENST00000368020 C8orf87E5RJ46 101 aa8.2□□□□□ -1.1
USF1-202ENST00000368020 PRO0628Q9UI54 55 aa8.2□□□□□ -1.1
USF1-202ENST00000368020 C1orf64Q8NEQ6 169 aa8.2□□□□□ -1.1
USF1-202ENST00000368020 LIMD2Q9BT23 127 aa8.19□□□□□ -1.1
USF1-202ENST00000368020 A0A087X002 238 aa8.17□□□□□ -1.1
USF1-202ENST00000368020 C4orf26Q17RF5 130 aa8.17□□□□□ -1.1
USF1-202ENST00000368020 NDUFS5O43920 106 aa8.16□□□□□ -1.1
USF1-202ENST00000368020 SPINK6Q6UWN8 80 aa8.16□□□□□ -1.1
USF1-202ENST00000368020 BIRC6Q9NR09 4857 aa8.15□□□□□ -1.1
USF1-202ENST00000368020 KRTAP13-2Q52LG2 175 aa8.15□□□□□ -1.1
USF1-202ENST00000368020 KRTAP1-4P0C5Y4 121 aa8.15□□□□□ -1.11
USF1-202ENST00000368020 C4orf48Q5BLP8 95 aa8.12□□□□□ -1.11
USF1-202ENST00000368020 SMR3BP02814 79 aaPredicted RBP8.12□□□□□ -1.11
USF1-202ENST00000368020 PLA2G1BP04054 148 aaKnown RBP8.11□□□□□ -1.11
USF1-202ENST00000368020 APOBP04114 4563 aaKnown RBP8.11□□□□□ -1.11
USF1-202ENST00000368020 SPINK1P00995 79 aa8.09□□□□□ -1.11
USF1-202ENST00000368020 LINC00313P59037 77 aa8.09□□□□□ -1.11
USF1-202ENST00000368020 C1orf195Q5TG92 126 aa8.09□□□□□ -1.11
USF1-202ENST00000368020 FP248Q71RG6 208 aaPredicted RBP8.09□□□□□ -1.11
USF1-202ENST00000368020 TYMSOSQ8TAI1 123 aa8.09□□□□□ -1.11
USF1-202ENST00000368020 LOC101927531A0A1B0GV80 90 aa8.08□□□□□ -1.12
USF1-202ENST00000368020 FAM229AH3BQW9 127 aa8.08□□□□□ -1.12
USF1-202ENST00000368020 RPS29P62273 56 aaKnown RBP8.08□□□□□ -1.12
USF1-202ENST00000368020 LOC100996750A0A140TA64 210 aa8.07□□□□□ -1.12
USF1-202ENST00000368020 NOTCH2NLQ7Z3S9 236 aa8.07□□□□□ -1.12
USF1-202ENST00000368020 KRTAP4-6Q9BYQ5 205 aa8.07□□□□□ -1.12
USF1-202ENST00000368020 IGLV7-46A0A075B6I9 117 aa8.06□□□□□ -1.12
USF1-202ENST00000368020 KRTAP10-4P60372 401 aaPredicted RBP8.06□□□□□ -1.12
USF1-202ENST00000368020 SPAG11AQ6PDA7 123 aa8.05□□□□□ -1.12
USF1-202ENST00000368020 Q8N1X5 172 aa8.04□□□□□ -1.12
USF1-202ENST00000368020 KIAA1109Q2LD37 5005 aa8.04□□□□□ -1.12
USF1-202ENST00000368020 VPS13BQ7Z7G8 4022 aa8.03□□□□□ -1.12
USF1-202ENST00000368020 PRR4Q16378 134 aa8.03□□□□□ -1.12
USF1-202ENST00000368020 Q5VSD8 79 aa8.02□□□□□ -1.13
USF1-202ENST00000368020 Q8N9P0 234 aaPredicted RBP8.02□□□□□ -1.13
USF1-202ENST00000368020 RYR1P21817 5038 aa8.01□□□□□ -1.13
USF1-202ENST00000368020 V9GYY9 64 aa8.01□□□□□ -1.13
USF1-202ENST00000368020 HSPG2P98160 4391 aa8.01□□□□□ -1.13
USF1-202ENST00000368020 Q1T7F1 81 aa8□□□□□ -1.13
USF1-202ENST00000368020 KRTAP13-3Q3SY46 172 aa7.99□□□□□ -1.13
USF1-202ENST00000368020 LINC00304Q8N9R0 145 aa7.99□□□□□ -1.13
USF1-202ENST00000368020 PCOTHQ58A44 107 aa7.98□□□□□ -1.13
USF1-202ENST00000368020 FAT1Q14517 4588 aa7.98□□□□□ -1.13
USF1-202ENST00000368020 MPLKIPQ8TAP9 179 aa7.97□□□□□ -1.13
USF1-202ENST00000368020 KRTAP17-1Q9BYP8 105 aa7.96□□□□□ -1.14
USF1-202ENST00000368020 Q5W150 140 aa7.95□□□□□ -1.14
USF1-202ENST00000368020 KRTAP16-1A8MUX0 517 aa7.93□□□□□ -1.14
USF1-202ENST00000368020 PRR26Q8N8Z3 221 aa7.93□□□□□ -1.14
USF1-202ENST00000368020 COA5Q86WW8 74 aa7.92□□□□□ -1.14
USF1-202ENST00000368020 FLG2Q5D862 2391 aaPredicted RBP7.88□□□□□ -1.15
USF1-202ENST00000368020 IGKV2-30P06310 120 aa7.87□□□□□ -1.15
USF1-202ENST00000368020 HERC2O95714 4834 aa7.86□□□□□ -1.15
USF1-202ENST00000368020 ACYP2P14621 99 aa7.84□□□□□ -1.15
USF1-202ENST00000368020 KRTAP4-5Q9BYR2 181 aa7.83□□□□□ -1.16
USF1-202ENST00000368020 HRES1P13985 223 aa7.81□□□□□ -1.16
USF1-202ENST00000368020 BRK1Q8WUW1 75 aa7.81□□□□□ -1.16
USF1-202ENST00000368020 DMAC1Q96GE9 116 aa7.81□□□□□ -1.16
USF1-202ENST00000368020 PCLOQ9Y6V0 5065 aa7.8□□□□□ -1.16
USF1-202ENST00000368020 SEC61GP60059 68 aa7.78□□□□□ -1.16
USF1-202ENST00000368020 PKHD1L1Q86WI1 4243 aa7.78□□□□□ -1.16
USF1-202ENST00000368020 PSPHP1O15172 72 aa7.77□□□□□ -1.17
USF1-202ENST00000368020 RETNLBQ9BQ08 111 aa7.77□□□□□ -1.17
USF1-202ENST00000368020 KRTAP10-8P60410 259 aa7.75□□□□□ -1.17
USF1-202ENST00000368020 C7orf65Q6ZTY9 151 aa7.75□□□□□ -1.17
USF1-202ENST00000368020 IGKV2D-30A0A075B6S6 120 aa7.74□□□□□ -1.17
USF1-202ENST00000368020 A8MUN3 132 aa7.74□□□□□ -1.17
USF1-202ENST00000368020 LINC01558Q9Y6Z2 57 aa7.74□□□□□ -1.17
USF1-202ENST00000368020 DMBT1Q9UGM3 2413 aaPredicted RBP7.73□□□□□ -1.17
USF1-202ENST00000368020 CHKB-CPT1BH3BT56 60 aa7.72□□□□□ -1.17
USF1-202ENST00000368020 C20orf166-AS1Q96NR2 134 aa7.72□□□□□ -1.17
USF1-202ENST00000368020 Q5VV11 94 aa7.72□□□□□ -1.17
USF1-202ENST00000368020 PRR15LQ9BU68 103 aa7.72□□□□□ -1.17
USF1-202ENST00000368020 A8MUU9 505 aa7.71□□□□□ -1.18
USF1-202ENST00000368020 Q75L30 129 aa7.7□□□□□ -1.18
USF1-202ENST00000368020 PMAIP1Q13794 54 aa7.69□□□□□ -1.18
USF1-202ENST00000368020 LCE2BO14633 110 aa7.69□□□□□ -1.18
USF1-202ENST00000368020 MT1HL1P0DM35 61 aa7.69□□□□□ -1.18
USF1-202ENST00000368020 LRP1Q07954 4544 aaKnown RBP7.68□□□□□ -1.18
USF1-202ENST00000368020 MYCBP2O75592 4640 aa7.67□□□□□ -1.18
USF1-202ENST00000368020 C9orf92A6NGG3 77 aa7.64□□□□□ -1.19
USF1-202ENST00000368020 ABCA13Q86UQ4 5058 aa7.64□□□□□ -1.19
USF1-202ENST00000368020 FAT3Q8TDW7 4589 aa7.62□□□□□ -1.19
USF1-202ENST00000368020 TNXBP22105 4242 aa7.59□□□□□ -1.2
USF1-202ENST00000368020 A6NED7 52 aa7.58□□□□□ -1.2
USF1-202ENST00000368020 J3QL48 77 aa7.58□□□□□ -1.2
USF1-202ENST00000368020 SPTSSBQ8NFR3 76 aa7.55□□□□□ -1.2
USF1-202ENST00000368020 CDC42SE1Q9NRR8 79 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms