RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ZCCHC13Q8WW36 166 aaKnown RBP5.27□□□□□ -1.57
SYNE1-206ENST00000367253 RPL37P61927 97 aaKnown RBP5.26□□□□□ -1.57
SYNE1-206ENST00000367253 GIG44P09565 113 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-206ENST00000367253 TACC2O95359 2948 aa5.26□□□□□ -1.57
SYNE1-206ENST00000367253 MMP24-AS1A0A0U1RRL7 71 aa5.24□□□□□ -1.57
SYNE1-206ENST00000367253 DCHS1Q96JQ0 3298 aa5.23□□□□□ -1.57
SYNE1-206ENST00000367253 H1FX-AS1Q4G0G2 97 aa5.23□□□□□ -1.57
SYNE1-206ENST00000367253 CELSR2Q9HCU4 2923 aa5.19□□□□□ -1.58
SYNE1-206ENST00000367253 KRTAP10-2P60368 255 aa5.19□□□□□ -1.58
SYNE1-206ENST00000367253 CFAP47Q6ZTR5 3102 aa5.18□□□□□ -1.58
SYNE1-206ENST00000367253 CRYBG3Q68DQ2 2970 aa5.17□□□□□ -1.58
SYNE1-206ENST00000367253 Q5W150 140 aa5.17□□□□□ -1.58
SYNE1-206ENST00000367253 NOTCH2NLQ7Z3S9 236 aa5.17□□□□□ -1.58
SYNE1-206ENST00000367253 A0A087X002 238 aa5.16□□□□□ -1.58
SYNE1-206ENST00000367253 DCHS2Q6V1P9 2916 aa5.16□□□□□ -1.58
SYNE1-206ENST00000367253 M0QZ58 72 aa5.14□□□□□ -1.59
SYNE1-206ENST00000367253 RPS29P62273 56 aaKnown RBP5.14□□□□□ -1.59
SYNE1-206ENST00000367253 NIPBLQ6KC79 2804 aaeCLIP5.13□□□□□ -1.59
SYNE1-206ENST00000367253 NF1P21359 2839 aa5.13□□□□□ -1.59
SYNE1-206ENST00000367253 NBEAL1Q6ZS30 2694 aa5.12□□□□□ -1.59
SYNE1-206ENST00000367253 KRTAP4-16G5E9R7 235 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-206ENST00000367253 LINC00472Q9H8W2 130 aa5.11□□□□□ -1.59
SYNE1-206ENST00000367253 ZFHX4Q86UP3 3567 aa5.1□□□□□ -1.59
SYNE1-206ENST00000367253 MXRA5Q9NR99 2828 aa5.1□□□□□ -1.59
SYNE1-206ENST00000367253 KRTAP11-1Q8IUC1 163 aa5.09□□□□□ -1.59
SYNE1-206ENST00000367253 Q8NDZ9 215 aa5.09□□□□□ -1.59
SYNE1-206ENST00000367253 ASH1LQ9NR48 2969 aaKnown RBP5.09□□□□□ -1.59
SYNE1-206ENST00000367253 TENM4Q6N022 2769 aa5.09□□□□□ -1.59
SYNE1-206ENST00000367253 FBN2P35556 2912 aa5.08□□□□□ -1.6
SYNE1-206ENST00000367253 NBEAL2Q6ZNJ1 2754 aa5.07□□□□□ -1.6
SYNE1-206ENST00000367253 BSNQ9UPA5 3926 aa5.06□□□□□ -1.6
SYNE1-206ENST00000367253 SPRR1AP35321 89 aa5.06□□□□□ -1.6
SYNE1-206ENST00000367253 SMG1Q96Q15 3661 aaKnown RBP5.06□□□□□ -1.6
SYNE1-206ENST00000367253 LAMA5O15230 3695 aa5.06□□□□□ -1.6
SYNE1-206ENST00000367253 RELNP78509 3460 aa5.05□□□□□ -1.6
SYNE1-206ENST00000367253 SPRR1BP22528 89 aa5.05□□□□□ -1.6
SYNE1-206ENST00000367253 PRO2289Q9P1D8 64 aa5.04□□□□□ -1.6
SYNE1-206ENST00000367253 PDZD2O15018 2839 aa5.04□□□□□ -1.6
SYNE1-206ENST00000367253 PP632Q6XCG6 107 aa5.03□□□□□ -1.6
SYNE1-206ENST00000367253 PANO1I0J062 215 aa5.01□□□□□ -1.61
SYNE1-206ENST00000367253 C10orf95Q9H7T3 257 aa5.01□□□□□ -1.61
SYNE1-206ENST00000367253 ASPMQ8IZT6 3477 aa4.99□□□□□ -1.61
SYNE1-206ENST00000367253 KRTAP26-1Q6PEX3 210 aa4.99□□□□□ -1.61
SYNE1-206ENST00000367253 KRTAP1-5Q9BYS1 174 aa4.98□□□□□ -1.61
SYNE1-206ENST00000367253 KRTAP29-1A8MX34 341 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-206ENST00000367253 OTOGQ6ZRI0 2925 aa4.95□□□□□ -1.62
SYNE1-206ENST00000367253 ZFHX3Q15911 3703 aa4.93□□□□□ -1.62
SYNE1-206ENST00000367253 P0C880 135 aa4.93□□□□□ -1.62
SYNE1-206ENST00000367253 KRTAP10-10P60014 251 aa4.89□□□□□ -1.63
SYNE1-206ENST00000367253 TENM1Q9UKZ4 2725 aa4.87□□□□□ -1.63
SYNE1-206ENST00000367253 KRTAP23-1A1A580 65 aa4.86□□□□□ -1.63
SYNE1-206ENST00000367253 CSMD1Q96PZ7 3565 aa4.86□□□□□ -1.63
SYNE1-206ENST00000367253 TNP1P09430 55 aa4.86□□□□□ -1.63
SYNE1-206ENST00000367253 TPRXLQ17RH7 258 aa4.86□□□□□ -1.63
SYNE1-206ENST00000367253 Q6ZRN7 208 aaPredicted RBP4.81□□□□□ -1.64
SYNE1-206ENST00000367253 KRTAP10-8P60410 259 aa4.8□□□□□ -1.64
SYNE1-206ENST00000367253 CELSR1Q9NYQ6 3014 aa4.79□□□□□ -1.64
SYNE1-206ENST00000367253 VWFP04275 2813 aa4.79□□□□□ -1.64
SYNE1-206ENST00000367253 VPS13CQ709C8 3753 aa4.78□□□□□ -1.64
SYNE1-206ENST00000367253 TENM3Q9P273 2699 aa4.78□□□□□ -1.64
SYNE1-206ENST00000367253 SVEP1Q4LDE5 3571 aa4.75□□□□□ -1.65
SYNE1-206ENST00000367253 NBPF19A0A087WUL8 3843 aa4.71□□□□□ -1.66
SYNE1-206ENST00000367253 FBN1P35555 2871 aaKnown RBP4.68□□□□□ -1.66
SYNE1-206ENST00000367253 A0A1B0GVY2 172 aa4.66□□□□□ -1.66
SYNE1-206ENST00000367253 H0YAA0 97 aa4.64□□□□□ -1.67
SYNE1-206ENST00000367253 AKAP9Q99996 3911 aa4.64□□□□□ -1.67
SYNE1-206ENST00000367253 XP32Q5T750 250 aa4.64□□□□□ -1.67
SYNE1-206ENST00000367253 ANK3Q12955 4377 aaKnown RBP4.63□□□□□ -1.67
SYNE1-206ENST00000367253 PKD1L1Q8TDX9 2849 aa4.63□□□□□ -1.67
SYNE1-206ENST00000367253 KRTAP13-2Q52LG2 175 aa4.63□□□□□ -1.67
SYNE1-206ENST00000367253 CSMD2Q7Z408 3487 aa4.61□□□□□ -1.67
SYNE1-206ENST00000367253 TGP01266 2768 aa4.53□□□□□ -1.68
SYNE1-206ENST00000367253 INE1O15225 51 aa4.53□□□□□ -1.68
SYNE1-206ENST00000367253 KRTAP7-1Q8IUC3 87 aa4.53□□□□□ -1.68
SYNE1-206ENST00000367253 KRTAP3-3Q9BYR6 98 aa4.53□□□□□ -1.68
SYNE1-206ENST00000367253 KRTAP3-2Q9BYR7 98 aa4.53□□□□□ -1.68
SYNE1-206ENST00000367253 TENM2Q9NT68 2774 aa4.52□□□□□ -1.69
SYNE1-206ENST00000367253 KRTAP13-3Q3SY46 172 aa4.49□□□□□ -1.69
SYNE1-206ENST00000367253 KRTAP13-1Q8IUC0 172 aa4.48□□□□□ -1.69
SYNE1-206ENST00000367253 TRRAPQ9Y4A5 3859 aa4.47□□□□□ -1.69
SYNE1-206ENST00000367253 FBN3Q75N90 2809 aa4.47□□□□□ -1.69
SYNE1-206ENST00000367253 KRTAP15-1Q3LI76 137 aa4.46□□□□□ -1.7
SYNE1-206ENST00000367253 CUBNO60494 3623 aa4.45□□□□□ -1.7
SYNE1-206ENST00000367253 ZNF469Q96JG9 3925 aaPredicted RBP4.44□□□□□ -1.7
SYNE1-206ENST00000367253 KRTAP1-4P0C5Y4 121 aa4.41□□□□□ -1.7
SYNE1-206ENST00000367253 SRRM2Q9UQ35 2752 aaKnown RBP4.35□□□□□ -1.71
SYNE1-206ENST00000367253 MEGF8Q7Z7M0 2845 aa4.3□□□□□ -1.72
SYNE1-206ENST00000367253 DNAH1Q9P2D7 4330 aa4.29□□□□□ -1.72
SYNE1-206ENST00000367253 ANK2Q01484 3957 aa4.26□□□□□ -1.73
SYNE1-206ENST00000367253 COL7A1Q02388 2944 aa4.23□□□□□ -1.73
SYNE1-206ENST00000367253 KRTAP12-2P59991 146 aa4.23□□□□□ -1.73
SYNE1-206ENST00000367253 CMYA5Q8N3K9 4069 aa4.21□□□□□ -1.74
SYNE1-206ENST00000367253 KRTAP13-4Q3LI77 160 aa4.21□□□□□ -1.74
SYNE1-206ENST00000367253 HUWE1Q7Z6Z7 4374 aaKnown RBP4.2□□□□□ -1.74
SYNE1-206ENST00000367253 DNAH3Q8TD57 4116 aa4.17□□□□□ -1.74
SYNE1-206ENST00000367253 DNAH9Q9NYC9 4486 aa4.16□□□□□ -1.74
SYNE1-206ENST00000367253 LYSTQ99698 3801 aa4.16□□□□□ -1.74
SYNE1-206ENST00000367253 DNHD1Q96M86 4753 aa4.13□□□□□ -1.75
SYNE1-206ENST00000367253 KRTAP12-1P59990 96 aa4.12□□□□□ -1.75
SYNE1-206ENST00000367253 CSMD3Q7Z407 3707 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 978.4 ms