RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 C20orf166-AS1Q96NR2 134 aa8.88□□□□□ -0.99
PTPRF-201ENST00000359947 KMT2BQ9UMN6 2715 aaPredicted RBP8.87□□□□□ -0.99
PTPRF-201ENST00000359947 A8MUU9 505 aa8.85□□□□□ -0.99
PTPRF-201ENST00000359947 SPTBN5Q9NRC6 3674 aaKnown RBP8.84□□□□□ -0.99
PTPRF-201ENST00000359947 ADGRG4Q8IZF6 3080 aa8.81□□□□□ -1
PTPRF-201ENST00000359947 KRTAP13-2Q52LG2 175 aa8.81□□□□□ -1
PTPRF-201ENST00000359947 FLNCQ14315 2725 aa8.79□□□□□ -1
PTPRF-201ENST00000359947 EYSQ5T1H1 3165 aa8.78□□□□□ -1
PTPRF-201ENST00000359947 KRTAP29-1A8MX34 341 aaPredicted RBP8.77□□□□□ -1.01
PTPRF-201ENST00000359947 TENM4Q6N022 2769 aa8.76□□□□□ -1.01
PTPRF-201ENST00000359947 KRTAP16-1A8MUX0 517 aa8.75□□□□□ -1.01
PTPRF-201ENST00000359947 KRTAP7-1Q8IUC3 87 aa8.75□□□□□ -1.01
PTPRF-201ENST00000359947 A8MU10 97 aa8.74□□□□□ -1.01
PTPRF-201ENST00000359947 RPS29P62273 56 aaKnown RBP8.72□□□□□ -1.01
PTPRF-201ENST00000359947 CELSR2Q9HCU4 2923 aa8.71□□□□□ -1.01
PTPRF-201ENST00000359947 ZZEF1O43149 2961 aa8.68□□□□□ -1.02
PTPRF-201ENST00000359947 NBEAQ8NFP9 2946 aa8.68□□□□□ -1.02
PTPRF-201ENST00000359947 ASB16-AS1Q495Z4 193 aa8.67□□□□□ -1.02
PTPRF-201ENST00000359947 KRTAP21-3Q3LHN1 58 aa8.66□□□□□ -1.02
PTPRF-201ENST00000359947 A0A1B0GVY2 172 aa8.64□□□□□ -1.03
PTPRF-201ENST00000359947 KRTAP25-1Q3LHN0 102 aa8.59□□□□□ -1.03
PTPRF-201ENST00000359947 KRTAP13-1Q8IUC0 172 aa8.58□□□□□ -1.04
PTPRF-201ENST00000359947 DCHS2Q6V1P9 2916 aa8.56□□□□□ -1.04
PTPRF-201ENST00000359947 NDUFAF8A1L188 74 aa8.55□□□□□ -1.04
PTPRF-201ENST00000359947 DMXL1Q9Y485 3027 aa8.54□□□□□ -1.04
PTPRF-201ENST00000359947 MYO15AQ9UKN7 3530 aa8.54□□□□□ -1.04
PTPRF-201ENST00000359947 TNRC18O15417 2968 aaPredicted RBP8.5□□□□□ -1.05
PTPRF-201ENST00000359947 TNP1P09430 55 aa8.48□□□□□ -1.05
PTPRF-201ENST00000359947 KRTAP10-8P60410 259 aa8.48□□□□□ -1.05
PTPRF-201ENST00000359947 A6NN06 94 aa8.48□□□□□ -1.05
PTPRF-201ENST00000359947 TENM1Q9UKZ4 2725 aa8.47□□□□□ -1.05
PTPRF-201ENST00000359947 C10orf95Q9H7T3 257 aa8.41□□□□□ -1.06
PTPRF-201ENST00000359947 XP32Q5T750 250 aa8.41□□□□□ -1.06
PTPRF-201ENST00000359947 LOC400499M0QZD8 3231 aa8.4□□□□□ -1.06
PTPRF-201ENST00000359947 ZANQ9Y493 2812 aa8.39□□□□□ -1.07
PTPRF-201ENST00000359947 NIPBLQ6KC79 2804 aaeCLIP8.39□□□□□ -1.07
PTPRF-201ENST00000359947 NF1P21359 2839 aa8.37□□□□□ -1.07
PTPRF-201ENST00000359947 WDFY3Q8IZQ1 3526 aa8.36□□□□□ -1.07
PTPRF-201ENST00000359947 KRTAP10-10P60014 251 aa8.36□□□□□ -1.07
PTPRF-201ENST00000359947 ASPMQ8IZT6 3477 aa8.36□□□□□ -1.07
PTPRF-201ENST00000359947 NBPF19A0A087WUL8 3843 aa8.32□□□□□ -1.08
PTPRF-201ENST00000359947 FBN2P35556 2912 aa8.31□□□□□ -1.08
PTPRF-201ENST00000359947 KRTAP1-4P0C5Y4 121 aa8.31□□□□□ -1.08
PTPRF-201ENST00000359947 TENM2Q9NT68 2774 aa8.28□□□□□ -1.08
PTPRF-201ENST00000359947 CELSR1Q9NYQ6 3014 aa8.28□□□□□ -1.08
PTPRF-201ENST00000359947 TENM3Q9P273 2699 aa8.27□□□□□ -1.08
PTPRF-201ENST00000359947 PKD1L1Q8TDX9 2849 aa8.25□□□□□ -1.09
PTPRF-201ENST00000359947 RELNP78509 3460 aa8.23□□□□□ -1.09
PTPRF-201ENST00000359947 TPRXLQ17RH7 258 aa8.2□□□□□ -1.1
PTPRF-201ENST00000359947 HRNRQ86YZ3 2850 aaPredicted RBP8.17□□□□□ -1.1
PTPRF-201ENST00000359947 VWFP04275 2813 aa8.15□□□□□ -1.1
PTPRF-201ENST00000359947 DCHS1Q96JQ0 3298 aa8.13□□□□□ -1.11
PTPRF-201ENST00000359947 LAMA5O15230 3695 aa8.1□□□□□ -1.11
PTPRF-201ENST00000359947 PRO2289Q9P1D8 64 aa8.09□□□□□ -1.11
PTPRF-201ENST00000359947 KRTAP13-3Q3SY46 172 aa8.06□□□□□ -1.12
PTPRF-201ENST00000359947 ZFHX4Q86UP3 3567 aa8.05□□□□□ -1.12
PTPRF-201ENST00000359947 ZFHX3Q15911 3703 aa8.04□□□□□ -1.12
PTPRF-201ENST00000359947 PP632Q6XCG6 107 aa8□□□□□ -1.13
PTPRF-201ENST00000359947 P0C880 135 aa7.96□□□□□ -1.14
PTPRF-201ENST00000359947 TGP01266 2768 aa7.96□□□□□ -1.14
PTPRF-201ENST00000359947 H0YAA0 97 aa7.96□□□□□ -1.14
PTPRF-201ENST00000359947 MXRA5Q9NR99 2828 aa7.94□□□□□ -1.14
PTPRF-201ENST00000359947 PDZD2O15018 2839 aa7.93□□□□□ -1.14
PTPRF-201ENST00000359947 CSMD1Q96PZ7 3565 aa7.91□□□□□ -1.14
PTPRF-201ENST00000359947 DMDP11532 3685 aa7.84□□□□□ -1.15
PTPRF-201ENST00000359947 SRRM2Q9UQ35 2752 aaKnown RBP7.74□□□□□ -1.17
PTPRF-201ENST00000359947 FBN1P35555 2871 aaKnown RBP7.7□□□□□ -1.18
PTPRF-201ENST00000359947 SMG1Q96Q15 3661 aaKnown RBP7.69□□□□□ -1.18
PTPRF-201ENST00000359947 SPENQ96T58 3664 aaKnown RBP7.66□□□□□ -1.18
PTPRF-201ENST00000359947 CUBNO60494 3623 aa7.66□□□□□ -1.18
PTPRF-201ENST00000359947 SVEP1Q4LDE5 3571 aa7.65□□□□□ -1.18
PTPRF-201ENST00000359947 KRTAP12-2P59991 146 aa7.62□□□□□ -1.19
PTPRF-201ENST00000359947 CSMD2Q7Z408 3487 aa7.62□□□□□ -1.19
PTPRF-201ENST00000359947 MUC3AQ02505 3323 aa7.55□□□□□ -1.2
PTPRF-201ENST00000359947 TRRAPQ9Y4A5 3859 aa7.47□□□□□ -1.21
PTPRF-201ENST00000359947 COL7A1Q02388 2944 aa7.45□□□□□ -1.22
PTPRF-201ENST00000359947 OTOGQ6ZRI0 2925 aa7.43□□□□□ -1.22
PTPRF-201ENST00000359947 KRTAP13-4Q3LI77 160 aa7.41□□□□□ -1.22
PTPRF-201ENST00000359947 FBN3Q75N90 2809 aa7.41□□□□□ -1.22
PTPRF-201ENST00000359947 KRTAP12-1P59990 96 aa7.38□□□□□ -1.23
PTPRF-201ENST00000359947 ANK3Q12955 4377 aaKnown RBP7.37□□□□□ -1.23
PTPRF-201ENST00000359947 KRTAP15-1Q3LI76 137 aa7.36□□□□□ -1.23
PTPRF-201ENST00000359947 MEGF8Q7Z7M0 2845 aa7.36□□□□□ -1.23
PTPRF-201ENST00000359947 KRTAP3-1Q9BYR8 98 aa7.32□□□□□ -1.24
PTPRF-201ENST00000359947 CRCT1Q9UGL9 99 aa7.31□□□□□ -1.24
PTPRF-201ENST00000359947 KRTAP4-5Q9BYR2 181 aa7.26□□□□□ -1.25
PTPRF-201ENST00000359947 VPS13CQ709C8 3753 aa7.19□□□□□ -1.26
PTPRF-201ENST00000359947 MT1HL1P0DM35 61 aa7.18□□□□□ -1.26
PTPRF-201ENST00000359947 BSNQ9UPA5 3926 aa7.15□□□□□ -1.26
PTPRF-201ENST00000359947 CSMD3Q7Z407 3707 aa7.1□□□□□ -1.27
PTPRF-201ENST00000359947 KRTAP10-6P60371 365 aaPredicted RBP7.06□□□□□ -1.28
PTPRF-201ENST00000359947 HUWE1Q7Z6Z7 4374 aaKnown RBP7.05□□□□□ -1.28
PTPRF-201ENST00000359947 KRTAP10-12P60413 245 aa7.02□□□□□ -1.29
PTPRF-201ENST00000359947 ALMS1Q8TCU4 4167 aa6.83□□□□□ -1.32
PTPRF-201ENST00000359947 KRTAP3-3Q9BYR6 98 aa6.83□□□□□ -1.32
PTPRF-201ENST00000359947 INE1O15225 51 aa6.82□□□□□ -1.32
PTPRF-201ENST00000359947 KRTAP10-4P60372 401 aaPredicted RBP6.82□□□□□ -1.32
PTPRF-201ENST00000359947 KRTAP3-2Q9BYR7 98 aa6.77□□□□□ -1.33
PTPRF-201ENST00000359947 LORP23490 312 aaPredicted RBP6.76□□□□□ -1.33
PTPRF-201ENST00000359947 KRTAP12-3P60328 96 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms