RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 FBN3Q75N90 2809 aa3.95□□□□□ -1.78
VPS13B-202ENST00000357162 KRTAP26-1Q6PEX3 210 aa3.94□□□□□ -1.78
VPS13B-202ENST00000357162 PP632Q6XCG6 107 aa3.93□□□□□ -1.78
VPS13B-202ENST00000357162 KRTAP1-1Q07627 177 aa3.93□□□□□ -1.78
VPS13B-202ENST00000357162 KRTAP25-1Q3LHN0 102 aa3.93□□□□□ -1.78
VPS13B-202ENST00000357162 CFAP47Q6ZTR5 3102 aa3.93□□□□□ -1.78
VPS13B-202ENST00000357162 KRTAP1-3Q8IUG1 177 aa3.92□□□□□ -1.78
VPS13B-202ENST00000357162 Q8NDZ9 215 aa3.92□□□□□ -1.78
VPS13B-202ENST00000357162 LAMA3Q16787 3333 aa3.92□□□□□ -1.78
VPS13B-202ENST00000357162 SEC61BP60468 96 aaKnown RBP3.91□□□□□ -1.78
VPS13B-202ENST00000357162 R4GN34 69 aa3.9□□□□□ -1.78
VPS13B-202ENST00000357162 A0A0G2JQZ4 141 aa3.9□□□□□ -1.78
VPS13B-202ENST00000357162 C9orf92A6NGG3 77 aa3.89□□□□□ -1.79
VPS13B-202ENST00000357162 CASC10Q5T4H9 136 aa3.88□□□□□ -1.79
VPS13B-202ENST00000357162 OTOGQ6ZRI0 2925 aa3.88□□□□□ -1.79
VPS13B-202ENST00000357162 USP34Q70CQ2 3546 aa3.87□□□□□ -1.79
VPS13B-202ENST00000357162 J3QL48 77 aa3.87□□□□□ -1.79
VPS13B-202ENST00000357162 CDH23Q9H251 3354 aa3.84□□□□□ -1.8
VPS13B-202ENST00000357162 EYSQ5T1H1 3165 aa3.83□□□□□ -1.8
VPS13B-202ENST00000357162 KRTAP10-3P60369 221 aa3.83□□□□□ -1.8
VPS13B-202ENST00000357162 XIRP2A4UGR9 3374 aa3.82□□□□□ -1.8
VPS13B-202ENST00000357162 KRTAP13-1Q8IUC0 172 aa3.8□□□□□ -1.8
VPS13B-202ENST00000357162 DNAH14Q0VDD8 3507 aa3.79□□□□□ -1.8
VPS13B-202ENST00000357162 KRTAP11-1Q8IUC1 163 aa3.78□□□□□ -1.8
VPS13B-202ENST00000357162 COL6A3P12111 3177 aa3.76□□□□□ -1.81
VPS13B-202ENST00000357162 SZT2Q5T011 3432 aa3.75□□□□□ -1.81
VPS13B-202ENST00000357162 C20orf166-AS1Q96NR2 134 aa3.75□□□□□ -1.81
VPS13B-202ENST00000357162 TNP1P09430 55 aa3.75□□□□□ -1.81
VPS13B-202ENST00000357162 UNC80Q8N2C7 3258 aa3.75□□□□□ -1.81
VPS13B-202ENST00000357162 A8MUU9 505 aa3.75□□□□□ -1.81
VPS13B-202ENST00000357162 KRTAP1-5Q9BYS1 174 aa3.74□□□□□ -1.81
VPS13B-202ENST00000357162 NDUFAF8A1L188 74 aa3.73□□□□□ -1.81
VPS13B-202ENST00000357162 ADM2Q7Z4H4 148 aa3.73□□□□□ -1.81
VPS13B-202ENST00000357162 PLAC4Q8WY50 150 aa3.72□□□□□ -1.81
VPS13B-202ENST00000357162 Q6ZRN7 208 aaPredicted RBP3.71□□□□□ -1.82
VPS13B-202ENST00000357162 SPTBN5Q9NRC6 3674 aaKnown RBP3.7□□□□□ -1.82
VPS13B-202ENST00000357162 MYO15AQ9UKN7 3530 aa3.7□□□□□ -1.82
VPS13B-202ENST00000357162 SMR3BP02814 79 aaPredicted RBP3.66□□□□□ -1.82
VPS13B-202ENST00000357162 P0C880 135 aa3.64□□□□□ -1.83
VPS13B-202ENST00000357162 SPEGQ15772 3267 aa3.64□□□□□ -1.83
VPS13B-202ENST00000357162 VCANP13611 3396 aa3.64□□□□□ -1.83
VPS13B-202ENST00000357162 M0R2T5 61 aa3.62□□□□□ -1.83
VPS13B-202ENST00000357162 WDFY3Q8IZQ1 3526 aa3.62□□□□□ -1.83
VPS13B-202ENST00000357162 KRTAP10-1P60331 282 aa3.62□□□□□ -1.83
VPS13B-202ENST00000357162 Q5VSD8 79 aa3.62□□□□□ -1.83
VPS13B-202ENST00000357162 KRTAP7-1Q8IUC3 87 aa3.59□□□□□ -1.83
VPS13B-202ENST00000357162 H0YAA0 97 aa3.59□□□□□ -1.83
VPS13B-202ENST00000357162 KRTAP13-2Q52LG2 175 aa3.57□□□□□ -1.84
VPS13B-202ENST00000357162 CELSR3Q9NYQ7 3312 aa3.56□□□□□ -1.84
VPS13B-202ENST00000357162 A8MU10 97 aa3.55□□□□□ -1.84
VPS13B-202ENST00000357162 KRTAP10-2P60368 255 aa3.55□□□□□ -1.84
VPS13B-202ENST00000357162 DMDP11532 3685 aa3.53□□□□□ -1.84
VPS13B-202ENST00000357162 KRTAP21-3Q3LHN1 58 aa3.53□□□□□ -1.85
VPS13B-202ENST00000357162 KRTAP13-3Q3SY46 172 aa3.52□□□□□ -1.85
VPS13B-202ENST00000357162 TPRXLQ17RH7 258 aa3.52□□□□□ -1.85
VPS13B-202ENST00000357162 MUC3AQ02505 3323 aa3.5□□□□□ -1.85
VPS13B-202ENST00000357162 AKAP9Q99996 3911 aa3.48□□□□□ -1.85
VPS13B-202ENST00000357162 ZFHX3Q15911 3703 aa3.48□□□□□ -1.85
VPS13B-202ENST00000357162 LOC400499M0QZD8 3231 aa3.47□□□□□ -1.85
VPS13B-202ENST00000357162 C10orf95Q9H7T3 257 aa3.47□□□□□ -1.85
VPS13B-202ENST00000357162 KRTAP1-4P0C5Y4 121 aa3.47□□□□□ -1.85
VPS13B-202ENST00000357162 DCHS1Q96JQ0 3298 aa3.46□□□□□ -1.85
VPS13B-202ENST00000357162 PRO2289Q9P1D8 64 aa3.43□□□□□ -1.86
VPS13B-202ENST00000357162 ASPMQ8IZT6 3477 aa3.42□□□□□ -1.86
VPS13B-202ENST00000357162 XP32Q5T750 250 aa3.41□□□□□ -1.86
VPS13B-202ENST00000357162 ZFHX4Q86UP3 3567 aa3.41□□□□□ -1.86
VPS13B-202ENST00000357162 INE1O15225 51 aa3.39□□□□□ -1.87
VPS13B-202ENST00000357162 KRTAP13-4Q3LI77 160 aa3.39□□□□□ -1.87
VPS13B-202ENST00000357162 KRTAP23-1A1A580 65 aa3.39□□□□□ -1.87
VPS13B-202ENST00000357162 TRRAPQ9Y4A5 3859 aa3.36□□□□□ -1.87
VPS13B-202ENST00000357162 LAMA5O15230 3695 aa3.33□□□□□ -1.88
VPS13B-202ENST00000357162 SPENQ96T58 3664 aaKnown RBP3.32□□□□□ -1.88
VPS13B-202ENST00000357162 ZNF469Q96JG9 3925 aaPredicted RBP3.31□□□□□ -1.88
VPS13B-202ENST00000357162 BSNQ9UPA5 3926 aa3.29□□□□□ -1.88
VPS13B-202ENST00000357162 NBPF19A0A087WUL8 3843 aa3.29□□□□□ -1.88
VPS13B-202ENST00000357162 KRTAP12-1P59990 96 aa3.27□□□□□ -1.89
VPS13B-202ENST00000357162 KRTAP10-8P60410 259 aa3.23□□□□□ -1.89
VPS13B-202ENST00000357162 SMG1Q96Q15 3661 aaKnown RBP3.23□□□□□ -1.89
VPS13B-202ENST00000357162 KRTAP12-2P59991 146 aa3.21□□□□□ -1.9
VPS13B-202ENST00000357162 CMYA5Q8N3K9 4069 aa3.2□□□□□ -1.9
VPS13B-202ENST00000357162 KRTAP15-1Q3LI76 137 aa3.2□□□□□ -1.9
VPS13B-202ENST00000357162 DNAH3Q8TD57 4116 aa3.2□□□□□ -1.9
VPS13B-202ENST00000357162 ANK2Q01484 3957 aa3.19□□□□□ -1.9
VPS13B-202ENST00000357162 CSMD1Q96PZ7 3565 aa3.19□□□□□ -1.9
VPS13B-202ENST00000357162 KRTAP10-6P60371 365 aaPredicted RBP3.18□□□□□ -1.9
VPS13B-202ENST00000357162 RELNP78509 3460 aa3.17□□□□□ -1.9
VPS13B-202ENST00000357162 VPS13CQ709C8 3753 aa3.17□□□□□ -1.9
VPS13B-202ENST00000357162 ALMS1Q8TCU4 4167 aa3.12□□□□□ -1.91
VPS13B-202ENST00000357162 KRTAP10-10P60014 251 aa3.1□□□□□ -1.91
VPS13B-202ENST00000357162 KRTAP3-1Q9BYR8 98 aa3.1□□□□□ -1.91
VPS13B-202ENST00000357162 KRTAP19-4Q3LI73 84 aa3.1□□□□□ -1.91
VPS13B-202ENST00000357162 SVEP1Q4LDE5 3571 aa3.1□□□□□ -1.91
VPS13B-202ENST00000357162 HECTD4Q9Y4D8 3996 aa3.08□□□□□ -1.92
VPS13B-202ENST00000357162 CSMD2Q7Z408 3487 aa3.07□□□□□ -1.92
VPS13B-202ENST00000357162 A0A1B0GVY2 172 aa3.07□□□□□ -1.92
VPS13B-202ENST00000357162 DNAH1Q9P2D7 4330 aa3.06□□□□□ -1.92
VPS13B-202ENST00000357162 DNAH7Q8WXX0 4024 aa3.05□□□□□ -1.92
VPS13B-202ENST00000357162 KRTAP3-2Q9BYR7 98 aa3.04□□□□□ -1.92
VPS13B-202ENST00000357162 LYSTQ99698 3801 aa3.03□□□□□ -1.92
VPS13B-202ENST00000357162 ANK3Q12955 4377 aaKnown RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms