RNA–Protein interactions for RNA: ENST00000354241.5

TRIM4-202, Transcript of tripartite motif containing 4, humanhuman

TSL 1 (best) BASIC

Gene TRIM4, Length 1,942 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-202ENST00000354241 TMEM258P61165 79 aa11.7□□□□□ -0.54
TRIM4-202ENST00000354241 SVIPQ8NHG7 77 aa11.7□□□□□ -0.54
TRIM4-202ENST00000354241 IGHV6-1A0A0B4J1U7 121 aa11.7□□□□□ -0.54
TRIM4-202ENST00000354241 KRTAP10-8P60410 259 aa11.7□□□□□ -0.54
TRIM4-202ENST00000354241 WFDC13Q8IUB5 93 aa11.69□□□□□ -0.54
TRIM4-202ENST00000354241 CYSTM1Q9H1C7 97 aa11.69□□□□□ -0.54
TRIM4-202ENST00000354241 LRP1Q07954 4544 aaKnown RBP11.68□□□□□ -0.54
TRIM4-202ENST00000354241 RPS28P62857 69 aaKnown RBP11.68□□□□□ -0.54
TRIM4-202ENST00000354241 KRTAP4-5Q9BYR2 181 aa11.65□□□□□ -0.54
TRIM4-202ENST00000354241 FLG2Q5D862 2391 aaPredicted RBP11.65□□□□□ -0.54
TRIM4-202ENST00000354241 TRAV7A0A075B6U4 112 aa11.64□□□□□ -0.55
TRIM4-202ENST00000354241 MMP24-AS1A0A0U1RRL7 71 aa11.64□□□□□ -0.55
TRIM4-202ENST00000354241 CASC2Q6XLA1 102 aa11.64□□□□□ -0.55
TRIM4-202ENST00000354241 C8orf17Q9NRJ1 99 aa11.64□□□□□ -0.55
TRIM4-202ENST00000354241 FAT3Q8TDW7 4589 aa11.63□□□□□ -0.55
TRIM4-202ENST00000354241 TNXBP22105 4242 aa11.63□□□□□ -0.55
TRIM4-202ENST00000354241 KRTAP29-1A8MX34 341 aaPredicted RBP11.6□□□□□ -0.55
TRIM4-202ENST00000354241 NOTCH2NLQ7Z3S9 236 aa11.6□□□□□ -0.55
TRIM4-202ENST00000354241 hDV103S1A0JD37 113 aa11.59□□□□□ -0.55
TRIM4-202ENST00000354241 BIRC6Q9NR09 4857 aa11.59□□□□□ -0.55
TRIM4-202ENST00000354241 MT1HL1P0DM35 61 aa11.56□□□□□ -0.56
TRIM4-202ENST00000354241 C8orf87E5RJ46 101 aa11.55□□□□□ -0.56
TRIM4-202ENST00000354241 C20orf197Q8N268 126 aa11.55□□□□□ -0.56
TRIM4-202ENST00000354241 RETNLBQ9BQ08 111 aa11.54□□□□□ -0.56
TRIM4-202ENST00000354241 OCR1Q9BZK8 76 aa11.54□□□□□ -0.56
TRIM4-202ENST00000354241 KLKP1Q107X0 134 aa11.53□□□□□ -0.56
TRIM4-202ENST00000354241 OXTP01178 125 aa11.52□□□□□ -0.56
TRIM4-202ENST00000354241 LINC00313P59037 77 aa11.52□□□□□ -0.56
TRIM4-202ENST00000354241 MYCBP2O75592 4640 aa11.5□□□□□ -0.57
TRIM4-202ENST00000354241 TMEM254Q8TBM7 123 aa11.5□□□□□ -0.57
TRIM4-202ENST00000354241 MRPL34Q9BQ48 92 aaKnown RBP11.49□□□□□ -0.57
TRIM4-202ENST00000354241 H7BZZ5 65 aa11.47□□□□□ -0.57
TRIM4-202ENST00000354241 NDUFS5O43920 106 aa11.45□□□□□ -0.58
TRIM4-202ENST00000354241 HERC2O95714 4834 aa11.43□□□□□ -0.58
TRIM4-202ENST00000354241 FAM236DA0A1B0GTK5 79 aa11.43□□□□□ -0.58
TRIM4-202ENST00000354241 NDUFC1O43677 76 aa11.43□□□□□ -0.58
TRIM4-202ENST00000354241 FAM236CP0DP71 79 aa11.43□□□□□ -0.58
TRIM4-202ENST00000354241 DMBT1Q9UGM3 2413 aaPredicted RBP11.42□□□□□ -0.58
TRIM4-202ENST00000354241 KRTAP16-1A8MUX0 517 aa11.39□□□□□ -0.59
TRIM4-202ENST00000354241 C9orf92A6NGG3 77 aa11.37□□□□□ -0.59
TRIM4-202ENST00000354241 TP53AIP1Q9HCN2 124 aa11.37□□□□□ -0.59
TRIM4-202ENST00000354241 SNURFQ9Y675 71 aa11.37□□□□□ -0.59
TRIM4-202ENST00000354241 ABCA13Q86UQ4 5058 aa11.35□□□□□ -0.59
TRIM4-202ENST00000354241 SERP1Q9Y6X1 66 aa11.35□□□□□ -0.59
TRIM4-202ENST00000354241 C5orf47Q569G3 176 aa11.34□□□□□ -0.59
TRIM4-202ENST00000354241 FP248Q71RG6 208 aaPredicted RBP11.33□□□□□ -0.6
TRIM4-202ENST00000354241 Q8N9P0 234 aaPredicted RBP11.33□□□□□ -0.6
TRIM4-202ENST00000354241 ATP5EP56381 51 aaPredicted RBP11.32□□□□□ -0.6
TRIM4-202ENST00000354241 H0Y9P7 68 aa11.31□□□□□ -0.6
TRIM4-202ENST00000354241 J3QL48 77 aa11.3□□□□□ -0.6
TRIM4-202ENST00000354241 TRAV22A0A0B4J277 110 aa11.29□□□□□ -0.6
TRIM4-202ENST00000354241 MP68P56378 58 aa11.29□□□□□ -0.6
TRIM4-202ENST00000354241 A0A0U1RQV1 116 aa11.28□□□□□ -0.6
TRIM4-202ENST00000354241 IGLV7-46A0A075B6I9 117 aa11.27□□□□□ -0.6
TRIM4-202ENST00000354241 PRR4Q16378 134 aa11.24□□□□□ -0.61
TRIM4-202ENST00000354241 LINC00208Q96KT6 92 aa11.23□□□□□ -0.61
TRIM4-202ENST00000354241 Q5W150 140 aa11.22□□□□□ -0.61
TRIM4-202ENST00000354241 H3BPC8 53 aa11.19□□□□□ -0.62
TRIM4-202ENST00000354241 C1orf64Q8NEQ6 169 aa11.18□□□□□ -0.62
TRIM4-202ENST00000354241 ZCCHC13Q8WW36 166 aaKnown RBP11.17□□□□□ -0.62
TRIM4-202ENST00000354241 C20orf166-AS1Q96NR2 134 aa11.17□□□□□ -0.62
TRIM4-202ENST00000354241 A8MUU9 505 aa11.17□□□□□ -0.62
TRIM4-202ENST00000354241 KRTAP13-3Q3SY46 172 aa11.17□□□□□ -0.62
TRIM4-202ENST00000354241 SMIM26A0A096LP01 95 aa11.15□□□□□ -0.62
TRIM4-202ENST00000354241 C4orf26Q17RF5 130 aa11.14□□□□□ -0.63
TRIM4-202ENST00000354241 Q75L30 129 aa11.09□□□□□ -0.63
TRIM4-202ENST00000354241 LOC101927531A0A1B0GV80 90 aa11.07□□□□□ -0.64
TRIM4-202ENST00000354241 XP32Q5T750 250 aa11.07□□□□□ -0.64
TRIM4-202ENST00000354241 TPRXLQ17RH7 258 aa11.04□□□□□ -0.64
TRIM4-202ENST00000354241 PCOTHQ58A44 107 aa11.02□□□□□ -0.65
TRIM4-202ENST00000354241 IGKV2-30P06310 120 aa11.01□□□□□ -0.65
TRIM4-202ENST00000354241 RPL37P61927 97 aaKnown RBP11□□□□□ -0.65
TRIM4-202ENST00000354241 CYP4F30PQ9H0H9 118 aa11□□□□□ -0.65
TRIM4-202ENST00000354241 IGKV2D-30A0A075B6S6 120 aa10.99□□□□□ -0.65
TRIM4-202ENST00000354241 ATP11AUNQ6ZP68 121 aa10.96□□□□□ -0.65
TRIM4-202ENST00000354241 PCLOQ9Y6V0 5065 aa10.95□□□□□ -0.66
TRIM4-202ENST00000354241 C7orf65Q6ZTY9 151 aa10.91□□□□□ -0.66
TRIM4-202ENST00000354241 LPAP08519 4548 aa10.89□□□□□ -0.67
TRIM4-202ENST00000354241 SPANXA2-OT1Q8N9U9 137 aa10.86□□□□□ -0.67
TRIM4-202ENST00000354241 HRES1P13985 223 aa10.84□□□□□ -0.67
TRIM4-202ENST00000354241 SPINK7P58062 85 aa10.83□□□□□ -0.68
TRIM4-202ENST00000354241 PRO0628Q9UI54 55 aa10.81□□□□□ -0.68
TRIM4-202ENST00000354241 MPLKIPQ8TAP9 179 aa10.8□□□□□ -0.68
TRIM4-202ENST00000354241 Q1T7F1 81 aa10.78□□□□□ -0.68
TRIM4-202ENST00000354241 LRP2P98164 4655 aa10.78□□□□□ -0.68
TRIM4-202ENST00000354241 HERC1Q15751 4861 aa10.69□□□□□ -0.7
TRIM4-202ENST00000354241 SEC61BP60468 96 aaKnown RBP10.68□□□□□ -0.7
TRIM4-202ENST00000354241 V9GYY9 64 aa10.66□□□□□ -0.7
TRIM4-202ENST00000354241 DMAC1Q96GE9 116 aa10.64□□□□□ -0.71
TRIM4-202ENST00000354241 BRK1Q8WUW1 75 aa10.64□□□□□ -0.71
TRIM4-202ENST00000354241 ACYP2P14621 99 aa10.6□□□□□ -0.71
TRIM4-202ENST00000354241 COA5Q86WW8 74 aa10.58□□□□□ -0.72
TRIM4-202ENST00000354241 HMCN2Q8NDA2 5059 aa10.57□□□□□ -0.72
TRIM4-202ENST00000354241 COX6B2Q6YFQ2 88 aa10.54□□□□□ -0.72
TRIM4-202ENST00000354241 A8MUN3 132 aa10.53□□□□□ -0.72
TRIM4-202ENST00000354241 KRTAP3-1Q9BYR8 98 aa10.52□□□□□ -0.73
TRIM4-202ENST00000354241 PSPHP1O15172 72 aa10.51□□□□□ -0.73
TRIM4-202ENST00000354241 MUC17Q685J3 4493 aa10.51□□□□□ -0.73
TRIM4-202ENST00000354241 CHKB-CPT1BH3BT56 60 aa10.46□□□□□ -0.73
TRIM4-202ENST00000354241 KRTAP4-1Q9BYQ7 146 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms