RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 OXTP01178 125 aa8.61□□□□□ -1.03
COL17A1-201ENST00000353479 RELNP78509 3460 aa8.6□□□□□ -1.03
COL17A1-201ENST00000353479 DMBT1Q9UGM3 2413 aaPredicted RBP8.59□□□□□ -1.03
COL17A1-201ENST00000353479 CAMK2N1Q7Z7J9 78 aa8.59□□□□□ -1.04
COL17A1-201ENST00000353479 NOTCH2NLQ7Z3S9 236 aa8.58□□□□□ -1.04
COL17A1-201ENST00000353479 KRTAP13-1Q8IUC0 172 aa8.57□□□□□ -1.04
COL17A1-201ENST00000353479 KRTAP29-1A8MX34 341 aaPredicted RBP8.57□□□□□ -1.04
COL17A1-201ENST00000353479 KRTAP13-2Q52LG2 175 aa8.57□□□□□ -1.04
COL17A1-201ENST00000353479 LINC01558Q9Y6Z2 57 aa8.55□□□□□ -1.04
COL17A1-201ENST00000353479 Q75L30 129 aa8.52□□□□□ -1.05
COL17A1-201ENST00000353479 ASB16-AS1Q495Z4 193 aa8.51□□□□□ -1.05
COL17A1-201ENST00000353479 RPS29P62273 56 aaKnown RBP8.51□□□□□ -1.05
COL17A1-201ENST00000353479 LAMA5O15230 3695 aa8.49□□□□□ -1.05
COL17A1-201ENST00000353479 R4GN34 69 aa8.48□□□□□ -1.05
COL17A1-201ENST00000353479 WDFY3Q8IZQ1 3526 aa8.48□□□□□ -1.05
COL17A1-201ENST00000353479 DMAC1Q96GE9 116 aa8.48□□□□□ -1.05
COL17A1-201ENST00000353479 FLG2Q5D862 2391 aaPredicted RBP8.47□□□□□ -1.05
COL17A1-201ENST00000353479 DCHS1Q96JQ0 3298 aa8.45□□□□□ -1.06
COL17A1-201ENST00000353479 ASPMQ8IZT6 3477 aa8.43□□□□□ -1.06
COL17A1-201ENST00000353479 MXRA5Q9NR99 2828 aa8.43□□□□□ -1.06
COL17A1-201ENST00000353479 DMDP11532 3685 aa8.42□□□□□ -1.06
COL17A1-201ENST00000353479 MUC3AQ02505 3323 aa8.41□□□□□ -1.06
COL17A1-201ENST00000353479 Q5XG85 94 aa8.4□□□□□ -1.07
COL17A1-201ENST00000353479 Q5VV11 94 aa8.38□□□□□ -1.07
COL17A1-201ENST00000353479 M0QZ58 72 aa8.35□□□□□ -1.07
COL17A1-201ENST00000353479 CELSR1Q9NYQ6 3014 aa8.33□□□□□ -1.08
COL17A1-201ENST00000353479 PDZD2O15018 2839 aa8.33□□□□□ -1.08
COL17A1-201ENST00000353479 ADM2Q7Z4H4 148 aa8.32□□□□□ -1.08
COL17A1-201ENST00000353479 ZFHX4Q86UP3 3567 aa8.32□□□□□ -1.08
COL17A1-201ENST00000353479 PRAC1Q96KF2 57 aa8.3□□□□□ -1.08
COL17A1-201ENST00000353479 RPL37P61927 97 aaKnown RBP8.3□□□□□ -1.08
COL17A1-201ENST00000353479 H1FX-AS1Q4G0G2 97 aa8.29□□□□□ -1.08
COL17A1-201ENST00000353479 TENM1Q9UKZ4 2725 aa8.27□□□□□ -1.09
COL17A1-201ENST00000353479 TENM2Q9NT68 2774 aa8.27□□□□□ -1.09
COL17A1-201ENST00000353479 NBPF19A0A087WUL8 3843 aa8.26□□□□□ -1.09
COL17A1-201ENST00000353479 KRTAP1-4P0C5Y4 121 aa8.24□□□□□ -1.09
COL17A1-201ENST00000353479 SPATA8Q6RVD6 105 aa8.23□□□□□ -1.09
COL17A1-201ENST00000353479 TENM3Q9P273 2699 aa8.23□□□□□ -1.09
COL17A1-201ENST00000353479 LUZP6Q538Z0 58 aa8.21□□□□□ -1.1
COL17A1-201ENST00000353479 OTOGQ6ZRI0 2925 aa8.16□□□□□ -1.1
COL17A1-201ENST00000353479 PLAC4Q8WY50 150 aa8.15□□□□□ -1.1
COL17A1-201ENST00000353479 A8MUU9 505 aa8.15□□□□□ -1.11
COL17A1-201ENST00000353479 C20orf166-AS1Q96NR2 134 aa8.12□□□□□ -1.11
COL17A1-201ENST00000353479 PKD1L1Q8TDX9 2849 aa8.12□□□□□ -1.11
COL17A1-201ENST00000353479 A0A0A0MQY5 61 aa8.11□□□□□ -1.11
COL17A1-201ENST00000353479 ROMO1P60602 79 aa8.09□□□□□ -1.11
COL17A1-201ENST00000353479 XP32Q5T750 250 aa8.06□□□□□ -1.12
COL17A1-201ENST00000353479 SMG1Q96Q15 3661 aaKnown RBP8.05□□□□□ -1.12
COL17A1-201ENST00000353479 ZFHX3Q15911 3703 aa8.05□□□□□ -1.12
COL17A1-201ENST00000353479 FBN1P35555 2871 aaKnown RBP8.02□□□□□ -1.12
COL17A1-201ENST00000353479 A0A1B0GVY2 172 aa8.01□□□□□ -1.13
COL17A1-201ENST00000353479 CSMD1Q96PZ7 3565 aa8.01□□□□□ -1.13
COL17A1-201ENST00000353479 A8MU10 97 aa8□□□□□ -1.13
COL17A1-201ENST00000353479 KRTAP16-1A8MUX0 517 aa7.98□□□□□ -1.13
COL17A1-201ENST00000353479 VWFP04275 2813 aa7.97□□□□□ -1.13
COL17A1-201ENST00000353479 TGP01266 2768 aa7.95□□□□□ -1.14
COL17A1-201ENST00000353479 ANK3Q12955 4377 aaKnown RBP7.95□□□□□ -1.14
COL17A1-201ENST00000353479 TPRXLQ17RH7 258 aa7.93□□□□□ -1.14
COL17A1-201ENST00000353479 CSMD2Q7Z408 3487 aa7.89□□□□□ -1.15
COL17A1-201ENST00000353479 SPENQ96T58 3664 aaKnown RBP7.89□□□□□ -1.15
COL17A1-201ENST00000353479 SVEP1Q4LDE5 3571 aa7.86□□□□□ -1.15
COL17A1-201ENST00000353479 KRTAP13-3Q3SY46 172 aa7.85□□□□□ -1.15
COL17A1-201ENST00000353479 KRTAP10-8P60410 259 aa7.81□□□□□ -1.16
COL17A1-201ENST00000353479 BSNQ9UPA5 3926 aa7.78□□□□□ -1.16
COL17A1-201ENST00000353479 A6NN06 94 aa7.7□□□□□ -1.18
COL17A1-201ENST00000353479 TRRAPQ9Y4A5 3859 aa7.69□□□□□ -1.18
COL17A1-201ENST00000353479 NDUFAF8A1L188 74 aa7.66□□□□□ -1.18
COL17A1-201ENST00000353479 TNP1P09430 55 aa7.64□□□□□ -1.19
COL17A1-201ENST00000353479 KRTAP25-1Q3LHN0 102 aa7.63□□□□□ -1.19
COL17A1-201ENST00000353479 CUBNO60494 3623 aa7.63□□□□□ -1.19
COL17A1-201ENST00000353479 KRTAP10-10P60014 251 aa7.61□□□□□ -1.19
COL17A1-201ENST00000353479 SRRM2Q9UQ35 2752 aaKnown RBP7.52□□□□□ -1.2
COL17A1-201ENST00000353479 H0YAA0 97 aa7.51□□□□□ -1.21
COL17A1-201ENST00000353479 P0C880 135 aa7.51□□□□□ -1.21
COL17A1-201ENST00000353479 FBN3Q75N90 2809 aa7.5□□□□□ -1.21
COL17A1-201ENST00000353479 MEGF8Q7Z7M0 2845 aa7.42□□□□□ -1.22
COL17A1-201ENST00000353479 HUWE1Q7Z6Z7 4374 aaKnown RBP7.4□□□□□ -1.22
COL17A1-201ENST00000353479 C10orf95Q9H7T3 257 aa7.38□□□□□ -1.23
COL17A1-201ENST00000353479 VPS13CQ709C8 3753 aa7.35□□□□□ -1.23
COL17A1-201ENST00000353479 COL7A1Q02388 2944 aa7.33□□□□□ -1.24
COL17A1-201ENST00000353479 PRO2289Q9P1D8 64 aa7.32□□□□□ -1.24
COL17A1-201ENST00000353479 PP632Q6XCG6 107 aa7.31□□□□□ -1.24
COL17A1-201ENST00000353479 MT1HL1P0DM35 61 aa7.29□□□□□ -1.24
COL17A1-201ENST00000353479 KRTAP3-1Q9BYR8 98 aa7.25□□□□□ -1.25
COL17A1-201ENST00000353479 KRTAP4-5Q9BYR2 181 aa7.22□□□□□ -1.25
COL17A1-201ENST00000353479 ZNF469Q96JG9 3925 aaPredicted RBP7.22□□□□□ -1.25
COL17A1-201ENST00000353479 AKAP9Q99996 3911 aa7.21□□□□□ -1.26
COL17A1-201ENST00000353479 KRTAP10-4P60372 401 aaPredicted RBP7.18□□□□□ -1.26
COL17A1-201ENST00000353479 KRTAP12-2P59991 146 aa7.15□□□□□ -1.27
COL17A1-201ENST00000353479 ALMS1Q8TCU4 4167 aa7.12□□□□□ -1.27
COL17A1-201ENST00000353479 DNAH9Q9NYC9 4486 aa7.11□□□□□ -1.27
COL17A1-201ENST00000353479 KRTAP12-1P59990 96 aa7.03□□□□□ -1.28
COL17A1-201ENST00000353479 KRTAP13-4Q3LI77 160 aa6.95□□□□□ -1.3
COL17A1-201ENST00000353479 KRTAP10-6P60371 365 aaPredicted RBP6.94□□□□□ -1.3
COL17A1-201ENST00000353479 CSMD3Q7Z407 3707 aa6.92□□□□□ -1.3
COL17A1-201ENST00000353479 DNHD1Q96M86 4753 aa6.89□□□□□ -1.31
COL17A1-201ENST00000353479 DNAH5Q8TE73 4624 aa6.88□□□□□ -1.31
COL17A1-201ENST00000353479 PLECQ15149 4684 aaKnown RBP6.86□□□□□ -1.31
COL17A1-201ENST00000353479 DNAH1Q9P2D7 4330 aa6.84□□□□□ -1.31
COL17A1-201ENST00000353479 KRTAP3-3Q9BYR6 98 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms