RNA–Protein interactions for RNA: ENST00000349703.6

RFC1-201, Transcript of replication factor C subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RFC1, Length 4,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-201ENST00000349703 GCN1Q92616 2671 aaKnown RBP3.25□□□□□ -1.89
RFC1-201ENST00000349703 KRTAP1-5Q9BYS1 174 aa3.24□□□□□ -1.89
RFC1-201ENST00000349703 MTORP42345 2549 aa3.24□□□□□ -1.89
RFC1-201ENST00000349703 VPS13CQ709C8 3753 aa3.23□□□□□ -1.89
RFC1-201ENST00000349703 ITPR1Q14643 2758 aa3.22□□□□□ -1.89
RFC1-201ENST00000349703 KRTAP13-3Q3SY46 172 aa3.21□□□□□ -1.89
RFC1-201ENST00000349703 DCHS1Q96JQ0 3298 aa3.21□□□□□ -1.9
RFC1-201ENST00000349703 FLNAP21333 2647 aaKnown RBP3.21□□□□□ -1.9
RFC1-201ENST00000349703 PIEZO1Q92508 2521 aa3.2□□□□□ -1.9
RFC1-201ENST00000349703 SPTBN4Q9H254 2564 aa3.2□□□□□ -1.9
RFC1-201ENST00000349703 SETXQ7Z333 2677 aaKnown RBP3.2□□□□□ -1.9
RFC1-201ENST00000349703 ITPR3Q14573 2671 aa3.19□□□□□ -1.9
RFC1-201ENST00000349703 RPL37P61927 97 aaKnown RBP3.19□□□□□ -1.9
RFC1-201ENST00000349703 ACANP16112 2415 aa3.18□□□□□ -1.9
RFC1-201ENST00000349703 DCHS2Q6V1P9 2916 aa3.17□□□□□ -1.9
RFC1-201ENST00000349703 NBEAL2Q6ZNJ1 2754 aa3.17□□□□□ -1.9
RFC1-201ENST00000349703 UNC79Q9P2D8 2635 aa3.17□□□□□ -1.9
RFC1-201ENST00000349703 TEX15Q9BXT5 2789 aa3.17□□□□□ -1.9
RFC1-201ENST00000349703 COX6B2Q6YFQ2 88 aa3.16□□□□□ -1.9
RFC1-201ENST00000349703 UTP20O75691 2785 aaKnown RBP3.16□□□□□ -1.9
RFC1-201ENST00000349703 ZNF469Q96JG9 3925 aaPredicted RBP3.15□□□□□ -1.9
RFC1-201ENST00000349703 BSNQ9UPA5 3926 aa3.15□□□□□ -1.9
RFC1-201ENST00000349703 Q6ZRN7 208 aaPredicted RBP3.15□□□□□ -1.91
RFC1-201ENST00000349703 ATMQ13315 3056 aa3.14□□□□□ -1.91
RFC1-201ENST00000349703 DMBT1Q9UGM3 2413 aaPredicted RBP3.14□□□□□ -1.91
RFC1-201ENST00000349703 H0YAA0 97 aa3.14□□□□□ -1.91
RFC1-201ENST00000349703 LCE3BQ5TA77 95 aa3.14□□□□□ -1.91
RFC1-201ENST00000349703 RPS29P62273 56 aaKnown RBP3.13□□□□□ -1.91
RFC1-201ENST00000349703 C10orf95Q9H7T3 257 aa3.13□□□□□ -1.91
RFC1-201ENST00000349703 CSMD3Q7Z407 3707 aa3.13□□□□□ -1.91
RFC1-201ENST00000349703 C9orf92A6NGG3 77 aa3.12□□□□□ -1.91
RFC1-201ENST00000349703 DMXL1Q9Y485 3027 aa3.11□□□□□ -1.91
RFC1-201ENST00000349703 TPRXLQ17RH7 258 aa3.1□□□□□ -1.91
RFC1-201ENST00000349703 ASH1LQ9NR48 2969 aaKnown RBP3.09□□□□□ -1.91
RFC1-201ENST00000349703 APCP25054 2843 aa3.08□□□□□ -1.92
RFC1-201ENST00000349703 KRTAP13-2Q52LG2 175 aa3.08□□□□□ -1.92
RFC1-201ENST00000349703 S4R3F8 94 aa3.08□□□□□ -1.92
RFC1-201ENST00000349703 CELSR1Q9NYQ6 3014 aa3.07□□□□□ -1.92
RFC1-201ENST00000349703 MXRA5Q9NR99 2828 aa3.07□□□□□ -1.92
RFC1-201ENST00000349703 KRTAP10-2P60368 255 aa3.07□□□□□ -1.92
RFC1-201ENST00000349703 ATRQ13535 2644 aa3.06□□□□□ -1.92
RFC1-201ENST00000349703 ZANQ9Y493 2812 aa3.06□□□□□ -1.92
RFC1-201ENST00000349703 CENPEQ02224 2701 aa3.06□□□□□ -1.92
RFC1-201ENST00000349703 IGSF10Q6WRI0 2623 aa3.06□□□□□ -1.92
RFC1-201ENST00000349703 FASNP49327 2511 aaKnown RBP3.05□□□□□ -1.92
RFC1-201ENST00000349703 KMT2BQ9UMN6 2715 aaPredicted RBP3.04□□□□□ -1.92
RFC1-201ENST00000349703 FLNCQ14315 2725 aa3.04□□□□□ -1.92
RFC1-201ENST00000349703 BAHCC1Q9P281 2608 aa3.04□□□□□ -1.92
RFC1-201ENST00000349703 CFAP46Q8IYW2 2715 aa3.04□□□□□ -1.92
RFC1-201ENST00000349703 COL12A1Q99715 3063 aa3.03□□□□□ -1.92
RFC1-201ENST00000349703 KRTAP12-2P59991 146 aa3.02□□□□□ -1.93
RFC1-201ENST00000349703 TEP1Q99973 2627 aaKnown RBP3.02□□□□□ -1.93
RFC1-201ENST00000349703 FBN2P35556 2912 aa3.02□□□□□ -1.93
RFC1-201ENST00000349703 KRTAP17-1Q9BYP8 105 aa3□□□□□ -1.93
RFC1-201ENST00000349703 HELZ2Q9BYK8 2649 aaKnown RBP3□□□□□ -1.93
RFC1-201ENST00000349703 UBR5O95071 2799 aaPredicted RBP2.99□□□□□ -1.93
RFC1-201ENST00000349703 M0QZ58 72 aa2.99□□□□□ -1.93
RFC1-201ENST00000349703 KRTAP10-1P60331 282 aa2.98□□□□□ -1.93
RFC1-201ENST00000349703 MAST4O15021 2626 aa2.98□□□□□ -1.93
RFC1-201ENST00000349703 HIVEP1P15822 2718 aa2.98□□□□□ -1.93
RFC1-201ENST00000349703 KRTAP1-4P0C5Y4 121 aa2.97□□□□□ -1.93
RFC1-201ENST00000349703 CRYBG3Q68DQ2 2970 aa2.97□□□□□ -1.93
RFC1-201ENST00000349703 NIPBLQ6KC79 2804 aaeCLIP2.97□□□□□ -1.934e-6■■■■□ 20.9
RFC1-201ENST00000349703 ALMS1Q8TCU4 4167 aa2.97□□□□□ -1.93
RFC1-201ENST00000349703 USP24Q9UPU5 2620 aa2.97□□□□□ -1.93
RFC1-201ENST00000349703 KRTAP12-1P59990 96 aa2.96□□□□□ -1.94
RFC1-201ENST00000349703 CELSR2Q9HCU4 2923 aa2.96□□□□□ -1.94
RFC1-201ENST00000349703 NF1P21359 2839 aa2.96□□□□□ -1.94
RFC1-201ENST00000349703 ANK2Q01484 3957 aa2.96□□□□□ -1.94
RFC1-201ENST00000349703 KRTAP10-7P60409 375 aaPredicted RBP2.95□□□□□ -1.94
RFC1-201ENST00000349703 FLNBO75369 2602 aaKnown RBP2.95□□□□□ -1.94
RFC1-201ENST00000349703 ANK3Q12955 4377 aaKnown RBP2.93□□□□□ -1.94
RFC1-201ENST00000349703 NBEAL1Q6ZS30 2694 aa2.93□□□□□ -1.94
RFC1-201ENST00000349703 KRTAP13-4Q3LI77 160 aa2.93□□□□□ -1.94
RFC1-201ENST00000349703 HECTD1Q9ULT8 2610 aa2.93□□□□□ -1.94
RFC1-201ENST00000349703 SMR3BP02814 79 aaPredicted RBP2.91□□□□□ -1.94
RFC1-201ENST00000349703 ITPR2Q14571 2701 aa2.9□□□□□ -1.94
RFC1-201ENST00000349703 NSD1Q96L73 2696 aaPredicted RBP2.9□□□□□ -1.95
RFC1-201ENST00000349703 TENM3Q9P273 2699 aa2.88□□□□□ -1.95
RFC1-201ENST00000349703 TENM2Q9NT68 2774 aa2.88□□□□□ -1.95
RFC1-201ENST00000349703 STAB2Q8WWQ8 2551 aa2.87□□□□□ -1.95
RFC1-201ENST00000349703 NOTCH1P46531 2555 aa2.86□□□□□ -1.95
RFC1-201ENST00000349703 COL6A5A8TX70 2615 aa2.86□□□□□ -1.95
RFC1-201ENST00000349703 PDZD2O15018 2839 aa2.85□□□□□ -1.95
RFC1-201ENST00000349703 KRTAP10-6P60371 365 aaPredicted RBP2.85□□□□□ -1.95
RFC1-201ENST00000349703 TGP01266 2768 aa2.84□□□□□ -1.96
RFC1-201ENST00000349703 VWFP04275 2813 aa2.83□□□□□ -1.96
RFC1-201ENST00000349703 STAB1Q9NY15 2570 aa2.82□□□□□ -1.96
RFC1-201ENST00000349703 MGAM2Q2M2H8 2515 aa2.81□□□□□ -1.96
RFC1-201ENST00000349703 TENM1Q9UKZ4 2725 aa2.8□□□□□ -1.96
RFC1-201ENST00000349703 SRRM2Q9UQ35 2752 aaKnown RBP2.8□□□□□ -1.96
RFC1-201ENST00000349703 LYSTQ99698 3801 aa2.79□□□□□ -1.96
RFC1-201ENST00000349703 KRTAP10-8P60410 259 aa2.79□□□□□ -1.96
RFC1-201ENST00000349703 TRRAPQ9Y4A5 3859 aa2.78□□□□□ -1.96
RFC1-201ENST00000349703 DNAH1Q9P2D7 4330 aa2.78□□□□□ -1.96
RFC1-201ENST00000349703 PKD1L1Q8TDX9 2849 aa2.78□□□□□ -1.96
RFC1-201ENST00000349703 TENM4Q6N022 2769 aa2.78□□□□□ -1.97
RFC1-201ENST00000349703 OTOGQ6ZRI0 2925 aa2.77□□□□□ -1.97
RFC1-201ENST00000349703 HUWE1Q7Z6Z7 4374 aaKnown RBP2.77□□□□□ -1.97
RFC1-201ENST00000349703 KRTAP12-3P60328 96 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms