RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 TNRC18O15417 2968 aaPredicted RBP7.63□□□□□ -1.19
COL6A3-202ENST00000347401 A8MUU9 505 aa7.62□□□□□ -1.19
COL6A3-202ENST00000347401 TGP01266 2768 aa7.62□□□□□ -1.19
COL6A3-202ENST00000347401 TNP1P09430 55 aa7.62□□□□□ -1.19
COL6A3-202ENST00000347401 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
COL6A3-202ENST00000347401 PDZD2O15018 2839 aa7.62□□□□□ -1.19
COL6A3-202ENST00000347401 KRTAP11-1Q8IUC1 163 aa7.61□□□□□ -1.19
COL6A3-202ENST00000347401 KRTAP1-5Q9BYS1 174 aa7.61□□□□□ -1.19
COL6A3-202ENST00000347401 USP34Q70CQ2 3546 aa7.58□□□□□ -1.2
COL6A3-202ENST00000347401 C10orf95Q9H7T3 257 aa7.58□□□□□ -1.2
COL6A3-202ENST00000347401 Q5VSD8 79 aa7.58□□□□□ -1.2
COL6A3-202ENST00000347401 BOD1L1Q8NFC6 3051 aa7.57□□□□□ -1.2
COL6A3-202ENST00000347401 DNAH14Q0VDD8 3507 aa7.54□□□□□ -1.2
COL6A3-202ENST00000347401 BRCA2P51587 3418 aa7.54□□□□□ -1.2
COL6A3-202ENST00000347401 DCHS2Q6V1P9 2916 aa7.49□□□□□ -1.21
COL6A3-202ENST00000347401 ZANQ9Y493 2812 aa7.49□□□□□ -1.21
COL6A3-202ENST00000347401 KRTAP10-1P60331 282 aa7.49□□□□□ -1.21
COL6A3-202ENST00000347401 KRTAP13-1Q8IUC0 172 aa7.48□□□□□ -1.21
COL6A3-202ENST00000347401 COL6A3P12111 3177 aa7.48□□□□□ -1.21
COL6A3-202ENST00000347401 A8MU10 97 aa7.47□□□□□ -1.21
COL6A3-202ENST00000347401 Q6ZRN7 208 aaPredicted RBP7.45□□□□□ -1.22
COL6A3-202ENST00000347401 DMXL1Q9Y485 3027 aa7.42□□□□□ -1.22
COL6A3-202ENST00000347401 ADGRG4Q8IZF6 3080 aa7.41□□□□□ -1.22
COL6A3-202ENST00000347401 KRTAP10-2P60368 255 aa7.39□□□□□ -1.23
COL6A3-202ENST00000347401 VCANP13611 3396 aa7.38□□□□□ -1.23
COL6A3-202ENST00000347401 ATMQ13315 3056 aa7.37□□□□□ -1.23
COL6A3-202ENST00000347401 FBN2P35556 2912 aa7.36□□□□□ -1.23
COL6A3-202ENST00000347401 CDH23Q9H251 3354 aa7.35□□□□□ -1.23
COL6A3-202ENST00000347401 SRRM2Q9UQ35 2752 aaKnown RBP7.34□□□□□ -1.23
COL6A3-202ENST00000347401 P0C880 135 aa7.33□□□□□ -1.24
COL6A3-202ENST00000347401 SPEGQ15772 3267 aa7.32□□□□□ -1.24
COL6A3-202ENST00000347401 TENM4Q6N022 2769 aa7.3□□□□□ -1.24
COL6A3-202ENST00000347401 CFAP47Q6ZTR5 3102 aa7.3□□□□□ -1.24
COL6A3-202ENST00000347401 CELSR1Q9NYQ6 3014 aa7.29□□□□□ -1.24
COL6A3-202ENST00000347401 HRNRQ86YZ3 2850 aaPredicted RBP7.26□□□□□ -1.25
COL6A3-202ENST00000347401 KRTAP13-2Q52LG2 175 aa7.26□□□□□ -1.25
COL6A3-202ENST00000347401 PKD1L1Q8TDX9 2849 aa7.24□□□□□ -1.25
COL6A3-202ENST00000347401 H0YAA0 97 aa7.24□□□□□ -1.25
COL6A3-202ENST00000347401 KRTAP7-1Q8IUC3 87 aa7.23□□□□□ -1.25
COL6A3-202ENST00000347401 MXRA5Q9NR99 2828 aa7.23□□□□□ -1.25
COL6A3-202ENST00000347401 VWFP04275 2813 aa7.2□□□□□ -1.26
COL6A3-202ENST00000347401 EYSQ5T1H1 3165 aa7.18□□□□□ -1.26
COL6A3-202ENST00000347401 PRO2289Q9P1D8 64 aa7.13□□□□□ -1.27
COL6A3-202ENST00000347401 KRTAP10-8P60410 259 aa7.1□□□□□ -1.27
COL6A3-202ENST00000347401 SZT2Q5T011 3432 aa7.09□□□□□ -1.27
COL6A3-202ENST00000347401 TPRXLQ17RH7 258 aa7.02□□□□□ -1.29
COL6A3-202ENST00000347401 TENM2Q9NT68 2774 aa6.98□□□□□ -1.29
COL6A3-202ENST00000347401 COL7A1Q02388 2944 aa6.97□□□□□ -1.29
COL6A3-202ENST00000347401 NBPF19A0A087WUL8 3843 aa6.97□□□□□ -1.29
COL6A3-202ENST00000347401 MYO15AQ9UKN7 3530 aa6.96□□□□□ -1.3
COL6A3-202ENST00000347401 XP32Q5T750 250 aa6.96□□□□□ -1.3
COL6A3-202ENST00000347401 KRTAP21-3Q3LHN1 58 aa6.93□□□□□ -1.3
COL6A3-202ENST00000347401 WDFY3Q8IZQ1 3526 aa6.92□□□□□ -1.3
COL6A3-202ENST00000347401 KRTAP1-4P0C5Y4 121 aa6.89□□□□□ -1.31
COL6A3-202ENST00000347401 SPTBN5Q9NRC6 3674 aaKnown RBP6.87□□□□□ -1.31
COL6A3-202ENST00000347401 ZFHX3Q15911 3703 aa6.84□□□□□ -1.31
COL6A3-202ENST00000347401 KRTAP13-3Q3SY46 172 aa6.84□□□□□ -1.31
COL6A3-202ENST00000347401 KRTAP13-4Q3LI77 160 aa6.83□□□□□ -1.32
COL6A3-202ENST00000347401 MEGF8Q7Z7M0 2845 aa6.82□□□□□ -1.32
COL6A3-202ENST00000347401 LOC400499M0QZD8 3231 aa6.82□□□□□ -1.32
COL6A3-202ENST00000347401 ZFHX4Q86UP3 3567 aa6.82□□□□□ -1.32
COL6A3-202ENST00000347401 INE1O15225 51 aa6.78□□□□□ -1.32
COL6A3-202ENST00000347401 ASPMQ8IZT6 3477 aa6.76□□□□□ -1.33
COL6A3-202ENST00000347401 LAMA5O15230 3695 aa6.69□□□□□ -1.34
COL6A3-202ENST00000347401 KRTAP10-10P60014 251 aa6.69□□□□□ -1.34
COL6A3-202ENST00000347401 FBN3Q75N90 2809 aa6.65□□□□□ -1.35
COL6A3-202ENST00000347401 KRTAP12-2P59991 146 aa6.62□□□□□ -1.35
COL6A3-202ENST00000347401 KRTAP12-1P59990 96 aa6.59□□□□□ -1.35
COL6A3-202ENST00000347401 RELNP78509 3460 aa6.59□□□□□ -1.35
COL6A3-202ENST00000347401 FBN1P35555 2871 aaKnown RBP6.58□□□□□ -1.36
COL6A3-202ENST00000347401 A0A1B0GVY2 172 aa6.58□□□□□ -1.36
COL6A3-202ENST00000347401 OTOGQ6ZRI0 2925 aa6.55□□□□□ -1.36
COL6A3-202ENST00000347401 DCHS1Q96JQ0 3298 aa6.54□□□□□ -1.36
COL6A3-202ENST00000347401 SPENQ96T58 3664 aaKnown RBP6.52□□□□□ -1.37
COL6A3-202ENST00000347401 SMG1Q96Q15 3661 aaKnown RBP6.43□□□□□ -1.38
COL6A3-202ENST00000347401 KRTAP15-1Q3LI76 137 aa6.43□□□□□ -1.38
COL6A3-202ENST00000347401 DMDP11532 3685 aa6.43□□□□□ -1.38
COL6A3-202ENST00000347401 KRTAP23-1A1A580 65 aa6.43□□□□□ -1.38
COL6A3-202ENST00000347401 CSMD1Q96PZ7 3565 aa6.3□□□□□ -1.4
COL6A3-202ENST00000347401 KRTAP10-6P60371 365 aaPredicted RBP6.27□□□□□ -1.41
COL6A3-202ENST00000347401 TRRAPQ9Y4A5 3859 aa6.24□□□□□ -1.41
COL6A3-202ENST00000347401 KRTAP3-1Q9BYR8 98 aa6.24□□□□□ -1.41
COL6A3-202ENST00000347401 AKAP9Q99996 3911 aa6.23□□□□□ -1.41
COL6A3-202ENST00000347401 CUBNO60494 3623 aa6.2□□□□□ -1.42
COL6A3-202ENST00000347401 VPS13CQ709C8 3753 aa6.18□□□□□ -1.42
COL6A3-202ENST00000347401 MUC3AQ02505 3323 aa6.07□□□□□ -1.44
COL6A3-202ENST00000347401 KRTAP10-12P60413 245 aa6.04□□□□□ -1.44
COL6A3-202ENST00000347401 SVEP1Q4LDE5 3571 aa6.02□□□□□ -1.45
COL6A3-202ENST00000347401 ALMS1Q8TCU4 4167 aa5.99□□□□□ -1.45
COL6A3-202ENST00000347401 KRTAP3-2Q9BYR7 98 aa5.96□□□□□ -1.45
COL6A3-202ENST00000347401 KRTAP3-3Q9BYR6 98 aa5.91□□□□□ -1.46
COL6A3-202ENST00000347401 KRTAP12-3P60328 96 aa5.89□□□□□ -1.47
COL6A3-202ENST00000347401 CSMD3Q7Z407 3707 aa5.89□□□□□ -1.47
COL6A3-202ENST00000347401 CSMD2Q7Z408 3487 aa5.85□□□□□ -1.47
COL6A3-202ENST00000347401 BSNQ9UPA5 3926 aa5.82□□□□□ -1.48
COL6A3-202ENST00000347401 CRCT1Q9UGL9 99 aa5.75□□□□□ -1.49
COL6A3-202ENST00000347401 KRTAP19-4Q3LI73 84 aa5.7□□□□□ -1.5
COL6A3-202ENST00000347401 CMYA5Q8N3K9 4069 aa5.65□□□□□ -1.51
COL6A3-202ENST00000347401 KRTAP10-5P60370 271 aa5.61□□□□□ -1.51
COL6A3-202ENST00000347401 DNAH3Q8TD57 4116 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms