RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 FLNCQ14315 2725 aa9.56□□□□□ -0.88
SMAD4-201ENST00000342988 HIVEP1P15822 2718 aa9.52□□□□□ -0.88
SMAD4-201ENST00000342988 LAMA1P25391 3075 aa9.49□□□□□ -0.89
SMAD4-201ENST00000342988 NIPBLQ6KC79 2804 aaeCLIP9.47□□□□□ -0.892e-7■□□□□ 8.6
SMAD4-201ENST00000342988 PRUNE2Q8WUY3 3088 aa9.47□□□□□ -0.89
SMAD4-201ENST00000342988 H0YAA0 97 aa9.46□□□□□ -0.89
SMAD4-201ENST00000342988 KRTAP13-2Q52LG2 175 aa9.45□□□□□ -0.9
SMAD4-201ENST00000342988 CELSR3Q9NYQ7 3312 aa9.45□□□□□ -0.9
SMAD4-201ENST00000342988 DMXL2Q8TDJ6 3036 aa9.45□□□□□ -0.9
SMAD4-201ENST00000342988 UNC80Q8N2C7 3258 aa9.42□□□□□ -0.9
SMAD4-201ENST00000342988 PDZD2O15018 2839 aa9.41□□□□□ -0.9
SMAD4-201ENST00000342988 KRTAP10-10P60014 251 aa9.38□□□□□ -0.91
SMAD4-201ENST00000342988 KRTAP13-1Q8IUC0 172 aa9.38□□□□□ -0.91
SMAD4-201ENST00000342988 TNRC18O15417 2968 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-201ENST00000342988 CELSR2Q9HCU4 2923 aa9.37□□□□□ -0.91
SMAD4-201ENST00000342988 SRRM2Q9UQ35 2752 aaKnown RBP9.36□□□□□ -0.91
SMAD4-201ENST00000342988 ZZEF1O43149 2961 aa9.33□□□□□ -0.92
SMAD4-201ENST00000342988 TACC2O95359 2948 aa9.26□□□□□ -0.93
SMAD4-201ENST00000342988 A0A1B0GVY2 172 aa9.26□□□□□ -0.93
SMAD4-201ENST00000342988 TPRXLQ17RH7 258 aa9.25□□□□□ -0.93
SMAD4-201ENST00000342988 XP32Q5T750 250 aa9.25□□□□□ -0.93
SMAD4-201ENST00000342988 USP34Q70CQ2 3546 aa9.25□□□□□ -0.93
SMAD4-201ENST00000342988 DNAH14Q0VDD8 3507 aa9.24□□□□□ -0.93
SMAD4-201ENST00000342988 MKI67P46013 3256 aaKnown RBP9.23□□□□□ -0.93
SMAD4-201ENST00000342988 BOD1L1Q8NFC6 3051 aa9.23□□□□□ -0.93
SMAD4-201ENST00000342988 HTTP42858 3142 aa9.23□□□□□ -0.93
SMAD4-201ENST00000342988 CELSR1Q9NYQ6 3014 aa9.21□□□□□ -0.93
SMAD4-201ENST00000342988 NBEAQ8NFP9 2946 aa9.19□□□□□ -0.94
SMAD4-201ENST00000342988 ATMQ13315 3056 aa9.15□□□□□ -0.94
SMAD4-201ENST00000342988 KRTAP12-2P59991 146 aa9.09□□□□□ -0.95
SMAD4-201ENST00000342988 COL6A3P12111 3177 aa9.09□□□□□ -0.95
SMAD4-201ENST00000342988 DMXL1Q9Y485 3027 aa9.08□□□□□ -0.96
SMAD4-201ENST00000342988 KRTAP7-1Q8IUC3 87 aa9.08□□□□□ -0.96
SMAD4-201ENST00000342988 INE1O15225 51 aa9.06□□□□□ -0.96
SMAD4-201ENST00000342988 ADGRG4Q8IZF6 3080 aa9.04□□□□□ -0.96
SMAD4-201ENST00000342988 KRTAP13-4Q3LI77 160 aa9.04□□□□□ -0.96
SMAD4-201ENST00000342988 DCHS2Q6V1P9 2916 aa9.03□□□□□ -0.96
SMAD4-201ENST00000342988 TENM2Q9NT68 2774 aa9□□□□□ -0.97
SMAD4-201ENST00000342988 ZANQ9Y493 2812 aa8.98□□□□□ -0.97
SMAD4-201ENST00000342988 VWFP04275 2813 aa8.96□□□□□ -0.98
SMAD4-201ENST00000342988 LAMA3Q16787 3333 aa8.91□□□□□ -0.98
SMAD4-201ENST00000342988 BRCA2P51587 3418 aa8.9□□□□□ -0.99
SMAD4-201ENST00000342988 KRTAP15-1Q3LI76 137 aa8.89□□□□□ -0.99
SMAD4-201ENST00000342988 SPEGQ15772 3267 aa8.89□□□□□ -0.99
SMAD4-201ENST00000342988 CFAP47Q6ZTR5 3102 aa8.88□□□□□ -0.99
SMAD4-201ENST00000342988 TENM4Q6N022 2769 aa8.88□□□□□ -0.99
SMAD4-201ENST00000342988 PKD1L1Q8TDX9 2849 aa8.84□□□□□ -0.99
SMAD4-201ENST00000342988 KRTAP21-3Q3LHN1 58 aa8.83□□□□□ -1
SMAD4-201ENST00000342988 VCANP13611 3396 aa8.82□□□□□ -1
SMAD4-201ENST00000342988 ZFHX4Q86UP3 3567 aa8.81□□□□□ -1
SMAD4-201ENST00000342988 KRTAP13-3Q3SY46 172 aa8.78□□□□□ -1
SMAD4-201ENST00000342988 KRTAP1-4P0C5Y4 121 aa8.78□□□□□ -1
SMAD4-201ENST00000342988 COL7A1Q02388 2944 aa8.76□□□□□ -1.01
SMAD4-201ENST00000342988 FBN2P35556 2912 aa8.73□□□□□ -1.01
SMAD4-201ENST00000342988 SZT2Q5T011 3432 aa8.68□□□□□ -1.02
SMAD4-201ENST00000342988 NBPF19A0A087WUL8 3843 aa8.68□□□□□ -1.02
SMAD4-201ENST00000342988 MXRA5Q9NR99 2828 aa8.66□□□□□ -1.02
SMAD4-201ENST00000342988 KRTAP12-1P59990 96 aa8.6□□□□□ -1.03
SMAD4-201ENST00000342988 SPTBN5Q9NRC6 3674 aaKnown RBP8.54□□□□□ -1.04
SMAD4-201ENST00000342988 MEGF8Q7Z7M0 2845 aa8.51□□□□□ -1.05
SMAD4-201ENST00000342988 CDH23Q9H251 3354 aa8.5□□□□□ -1.05
SMAD4-201ENST00000342988 ZFHX3Q15911 3703 aa8.43□□□□□ -1.06
SMAD4-201ENST00000342988 WDFY3Q8IZQ1 3526 aa8.36□□□□□ -1.07
SMAD4-201ENST00000342988 LOC400499M0QZD8 3231 aa8.33□□□□□ -1.08
SMAD4-201ENST00000342988 HRNRQ86YZ3 2850 aaPredicted RBP8.31□□□□□ -1.08
SMAD4-201ENST00000342988 ASPMQ8IZT6 3477 aa8.31□□□□□ -1.08
SMAD4-201ENST00000342988 OTOGQ6ZRI0 2925 aa8.29□□□□□ -1.08
SMAD4-201ENST00000342988 LAMA5O15230 3695 aa8.27□□□□□ -1.09
SMAD4-201ENST00000342988 KRTAP10-12P60413 245 aa8.24□□□□□ -1.09
SMAD4-201ENST00000342988 EYSQ5T1H1 3165 aa8.21□□□□□ -1.1
SMAD4-201ENST00000342988 CRCT1Q9UGL9 99 aa8.21□□□□□ -1.1
SMAD4-201ENST00000342988 MYO15AQ9UKN7 3530 aa8.16□□□□□ -1.1
SMAD4-201ENST00000342988 SPENQ96T58 3664 aaKnown RBP8.14□□□□□ -1.11
SMAD4-201ENST00000342988 SMG1Q96Q15 3661 aaKnown RBP8.09□□□□□ -1.11
SMAD4-201ENST00000342988 FBN3Q75N90 2809 aa8.06□□□□□ -1.12
SMAD4-201ENST00000342988 KRTAP10-6P60371 365 aaPredicted RBP8.05□□□□□ -1.12
SMAD4-201ENST00000342988 KRTAP23-1A1A580 65 aa8.04□□□□□ -1.12
SMAD4-201ENST00000342988 RELNP78509 3460 aa7.99□□□□□ -1.13
SMAD4-201ENST00000342988 DMDP11532 3685 aa7.97□□□□□ -1.13
SMAD4-201ENST00000342988 DCHS1Q96JQ0 3298 aa7.96□□□□□ -1.13
SMAD4-201ENST00000342988 KRTAP12-3P60328 96 aa7.93□□□□□ -1.14
SMAD4-201ENST00000342988 CSMD1Q96PZ7 3565 aa7.87□□□□□ -1.15
SMAD4-201ENST00000342988 KRTAP3-1Q9BYR8 98 aa7.84□□□□□ -1.15
SMAD4-201ENST00000342988 KRTAP10-5P60370 271 aa7.81□□□□□ -1.16
SMAD4-201ENST00000342988 AKAP9Q99996 3911 aa7.79□□□□□ -1.16
SMAD4-201ENST00000342988 VPS13CQ709C8 3753 aa7.74□□□□□ -1.17
SMAD4-201ENST00000342988 FBN1P35555 2871 aaKnown RBP7.71□□□□□ -1.18
SMAD4-201ENST00000342988 TRRAPQ9Y4A5 3859 aa7.64□□□□□ -1.19
SMAD4-201ENST00000342988 LCE3AQ5TA76 89 aa7.55□□□□□ -1.2
SMAD4-201ENST00000342988 CSMD3Q7Z407 3707 aa7.53□□□□□ -1.2
SMAD4-201ENST00000342988 KRTAP8-1Q8IUC2 63 aa7.51□□□□□ -1.21
SMAD4-201ENST00000342988 ALMS1Q8TCU4 4167 aa7.46□□□□□ -1.22
SMAD4-201ENST00000342988 MUC3AQ02505 3323 aa7.41□□□□□ -1.22
SMAD4-201ENST00000342988 KRTAP3-2Q9BYR7 98 aa7.41□□□□□ -1.22
SMAD4-201ENST00000342988 CUBNO60494 3623 aa7.41□□□□□ -1.22
SMAD4-201ENST00000342988 KRTAP3-3Q9BYR6 98 aa7.37□□□□□ -1.23
SMAD4-201ENST00000342988 CMYA5Q8N3K9 4069 aa7.37□□□□□ -1.23
SMAD4-201ENST00000342988 SVEP1Q4LDE5 3571 aa7.26□□□□□ -1.25
SMAD4-201ENST00000342988 CSMD2Q7Z408 3487 aa7.26□□□□□ -1.25
SMAD4-201ENST00000342988 BSNQ9UPA5 3926 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms