RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 PRR4Q16378 134 aa8.85□□□□□ -0.99
TPM3-208ENST00000341485 CYP4F30PQ9H0H9 118 aa8.85□□□□□ -0.99
TPM3-208ENST00000341485 LRP1BQ9NZR2 4599 aa8.85□□□□□ -0.99
TPM3-208ENST00000341485 A0A1B0GVX0 72 aa8.85□□□□□ -0.99
TPM3-208ENST00000341485 DYNC1H1Q14204 4646 aaKnown RBP8.84□□□□□ -0.99
TPM3-208ENST00000341485 IGHV6-1A0A0B4J1U7 121 aa8.84□□□□□ -0.99
TPM3-208ENST00000341485 PKHD1P08F94 4074 aa8.82□□□□□ -1
TPM3-208ENST00000341485 SMR3BP02814 79 aaPredicted RBP8.81□□□□□ -1
TPM3-208ENST00000341485 CDK2AP2O75956 126 aa8.81□□□□□ -1
TPM3-208ENST00000341485 MPLKIPQ8TAP9 179 aa8.81□□□□□ -1
TPM3-208ENST00000341485 A0A087X002 238 aa8.79□□□□□ -1
TPM3-208ENST00000341485 NOTCH2NLQ7Z3S9 236 aa8.79□□□□□ -1
TPM3-208ENST00000341485 TP53AIP1Q9HCN2 124 aa8.79□□□□□ -1
TPM3-208ENST00000341485 SPANXA2-OT1Q8N9U9 137 aa8.77□□□□□ -1
TPM3-208ENST00000341485 RYR3Q15413 4870 aa8.76□□□□□ -1.01
TPM3-208ENST00000341485 CD164Q04900 197 aa8.76□□□□□ -1.01
TPM3-208ENST00000341485 SSBP3-AS1Q7Z2R9 100 aa8.76□□□□□ -1.01
TPM3-208ENST00000341485 MRPL34Q9BQ48 92 aaKnown RBP8.76□□□□□ -1.01
TPM3-208ENST00000341485 SPINK6Q6UWN8 80 aa8.75□□□□□ -1.01
TPM3-208ENST00000341485 NDUFS5O43920 106 aa8.74□□□□□ -1.01
TPM3-208ENST00000341485 KRTAP3-3Q9BYR6 98 aa8.73□□□□□ -1.01
TPM3-208ENST00000341485 KRTAP3-2Q9BYR7 98 aa8.73□□□□□ -1.01
TPM3-208ENST00000341485 APOBP04114 4563 aaKnown RBP8.72□□□□□ -1.01
TPM3-208ENST00000341485 KRTAP13-2Q52LG2 175 aa8.71□□□□□ -1.02
TPM3-208ENST00000341485 PCOTHQ58A44 107 aa8.69□□□□□ -1.02
TPM3-208ENST00000341485 VPS13BQ7Z7G8 4022 aa8.68□□□□□ -1.02
TPM3-208ENST00000341485 KRTAP1-4P0C5Y4 121 aa8.68□□□□□ -1.02
TPM3-208ENST00000341485 Q1T7F1 81 aa8.68□□□□□ -1.02
TPM3-208ENST00000341485 IGLV7-46A0A075B6I9 117 aa8.68□□□□□ -1.02
TPM3-208ENST00000341485 PLA2G1BP04054 148 aaKnown RBP8.66□□□□□ -1.02
TPM3-208ENST00000341485 FAM229AH3BQW9 127 aa8.65□□□□□ -1.03
TPM3-208ENST00000341485 KRTAP10-4P60372 401 aaPredicted RBP8.64□□□□□ -1.03
TPM3-208ENST00000341485 C4orf48Q5BLP8 95 aa8.64□□□□□ -1.03
TPM3-208ENST00000341485 C8orf87E5RJ46 101 aa8.63□□□□□ -1.03
TPM3-208ENST00000341485 Q5W150 140 aa8.62□□□□□ -1.03
TPM3-208ENST00000341485 KRTAP13-3Q3SY46 172 aa8.61□□□□□ -1.03
TPM3-208ENST00000341485 C1orf195Q5TG92 126 aa8.61□□□□□ -1.03
TPM3-208ENST00000341485 TYMSOSQ8TAI1 123 aa8.6□□□□□ -1.03
TPM3-208ENST00000341485 PRO0628Q9UI54 55 aa8.6□□□□□ -1.03
TPM3-208ENST00000341485 COA5Q86WW8 74 aa8.59□□□□□ -1.03
TPM3-208ENST00000341485 FAT1Q14517 4588 aa8.58□□□□□ -1.04
TPM3-208ENST00000341485 Q5VSD8 79 aa8.58□□□□□ -1.04
TPM3-208ENST00000341485 BRK1Q8WUW1 75 aa8.58□□□□□ -1.04
TPM3-208ENST00000341485 LOC101927531A0A1B0GV80 90 aa8.57□□□□□ -1.04
TPM3-208ENST00000341485 PSPHP1O15172 72 aa8.57□□□□□ -1.04
TPM3-208ENST00000341485 PRR26Q8N8Z3 221 aa8.57□□□□□ -1.04
TPM3-208ENST00000341485 Q8N9P0 234 aaPredicted RBP8.57□□□□□ -1.04
TPM3-208ENST00000341485 LINC00313P59037 77 aa8.57□□□□□ -1.04
TPM3-208ENST00000341485 V9GYY9 64 aa8.55□□□□□ -1.04
TPM3-208ENST00000341485 A8MUN3 132 aa8.52□□□□□ -1.05
TPM3-208ENST00000341485 LIMD2Q9BT23 127 aa8.52□□□□□ -1.05
TPM3-208ENST00000341485 RYR1P21817 5038 aa8.5□□□□□ -1.05
TPM3-208ENST00000341485 HSPG2P98160 4391 aa8.5□□□□□ -1.05
TPM3-208ENST00000341485 KRTAP16-1A8MUX0 517 aa8.5□□□□□ -1.05
TPM3-208ENST00000341485 LINC00304Q8N9R0 145 aa8.49□□□□□ -1.05
TPM3-208ENST00000341485 HRES1P13985 223 aa8.49□□□□□ -1.05
TPM3-208ENST00000341485 Q5VV11 94 aa8.48□□□□□ -1.05
TPM3-208ENST00000341485 SPINK1P00995 79 aa8.47□□□□□ -1.05
TPM3-208ENST00000341485 RETNLBQ9BQ08 111 aa8.47□□□□□ -1.05
TPM3-208ENST00000341485 EPPK1P58107 5090 aaKnown RBP8.46□□□□□ -1.05
TPM3-208ENST00000341485 SPAG11AQ6PDA7 123 aa8.46□□□□□ -1.05
TPM3-208ENST00000341485 Q8N1X5 172 aa8.45□□□□□ -1.06
TPM3-208ENST00000341485 PKHD1L1Q86WI1 4243 aa8.45□□□□□ -1.06
TPM3-208ENST00000341485 PRR15LQ9BU68 103 aa8.44□□□□□ -1.06
TPM3-208ENST00000341485 KIAA1109Q2LD37 5005 aa8.41□□□□□ -1.06
TPM3-208ENST00000341485 IGKV2-30P06310 120 aa8.41□□□□□ -1.06
TPM3-208ENST00000341485 KRTAP17-1Q9BYP8 105 aa8.41□□□□□ -1.06
TPM3-208ENST00000341485 RPS29P62273 56 aaKnown RBP8.41□□□□□ -1.06
TPM3-208ENST00000341485 LINC01558Q9Y6Z2 57 aa8.38□□□□□ -1.07
TPM3-208ENST00000341485 CHKB-CPT1BH3BT56 60 aa8.37□□□□□ -1.07
TPM3-208ENST00000341485 ACYP2P14621 99 aa8.36□□□□□ -1.07
TPM3-208ENST00000341485 Q75L30 129 aa8.36□□□□□ -1.07
TPM3-208ENST00000341485 DMAC1Q96GE9 116 aa8.36□□□□□ -1.07
TPM3-208ENST00000341485 A8MU10 97 aa8.32□□□□□ -1.08
TPM3-208ENST00000341485 KRTAP10-8P60410 259 aa8.32□□□□□ -1.08
TPM3-208ENST00000341485 IGKV2D-30A0A075B6S6 120 aa8.3□□□□□ -1.08
TPM3-208ENST00000341485 A6NED7 52 aa8.25□□□□□ -1.09
TPM3-208ENST00000341485 LCA10Q71F78 164 aa8.24□□□□□ -1.09
TPM3-208ENST00000341485 LRP1Q07954 4544 aaKnown RBP8.24□□□□□ -1.09
TPM3-208ENST00000341485 FAT3Q8TDW7 4589 aa8.23□□□□□ -1.09
TPM3-208ENST00000341485 KRTAP4-5Q9BYR2 181 aa8.22□□□□□ -1.09
TPM3-208ENST00000341485 TNXBP22105 4242 aa8.21□□□□□ -1.1
TPM3-208ENST00000341485 MT1HL1P0DM35 61 aa8.2□□□□□ -1.1
TPM3-208ENST00000341485 SPINK7P58062 85 aa8.19□□□□□ -1.1
TPM3-208ENST00000341485 FLG2Q5D862 2391 aaPredicted RBP8.18□□□□□ -1.1
TPM3-208ENST00000341485 C9orf92A6NGG3 77 aa8.18□□□□□ -1.1
TPM3-208ENST00000341485 C7orf65Q6ZTY9 151 aa8.18□□□□□ -1.1
TPM3-208ENST00000341485 CDC42SE1Q9NRR8 79 aa8.17□□□□□ -1.1
TPM3-208ENST00000341485 BIRC6Q9NR09 4857 aa8.17□□□□□ -1.1
TPM3-208ENST00000341485 A8MUU9 505 aa8.15□□□□□ -1.11
TPM3-208ENST00000341485 C20orf166-AS1Q96NR2 134 aa8.15□□□□□ -1.11
TPM3-208ENST00000341485 J3QL48 77 aa8.14□□□□□ -1.11
TPM3-208ENST00000341485 SPTSSBQ8NFR3 76 aa8.11□□□□□ -1.11
TPM3-208ENST00000341485 ATP11AUNQ6ZP68 121 aa8.1□□□□□ -1.11
TPM3-208ENST00000341485 PMAIP1Q13794 54 aa8.09□□□□□ -1.11
TPM3-208ENST00000341485 A0A1B0GU69 56 aa8.08□□□□□ -1.12
TPM3-208ENST00000341485 MYCBP2O75592 4640 aa8.08□□□□□ -1.12
TPM3-208ENST00000341485 HERC2O95714 4834 aa8.05□□□□□ -1.12
TPM3-208ENST00000341485 DMBT1Q9UGM3 2413 aaPredicted RBP8.05□□□□□ -1.12
TPM3-208ENST00000341485 ABCA13Q86UQ4 5058 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 306 ms