RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 FBN2P35556 2912 aa3.72□□□□□ -1.81
PRKDC-202ENST00000338368 LAMA5O15230 3695 aa3.71□□□□□ -1.82
PRKDC-202ENST00000338368 Q8N1X5 172 aa3.7□□□□□ -1.82
PRKDC-202ENST00000338368 CSAG1Q6PB30 78 aa3.68□□□□□ -1.82
PRKDC-202ENST00000338368 NOTCH2NLQ7Z3S9 236 aa3.68□□□□□ -1.82
PRKDC-202ENST00000338368 CELSR1Q9NYQ6 3014 aa3.67□□□□□ -1.82
PRKDC-202ENST00000338368 Q5W150 140 aa3.67□□□□□ -1.82
PRKDC-202ENST00000338368 ZCCHC13Q8WW36 166 aaKnown RBP3.67□□□□□ -1.82
PRKDC-202ENST00000338368 LUZP6Q538Z0 58 aa3.67□□□□□ -1.82
PRKDC-202ENST00000338368 CELSR2Q9HCU4 2923 aa3.67□□□□□ -1.82
PRKDC-202ENST00000338368 NBPF19A0A087WUL8 3843 aa3.67□□□□□ -1.82
PRKDC-202ENST00000338368 DMAC1Q96GE9 116 aa3.66□□□□□ -1.82
PRKDC-202ENST00000338368 MXRA5Q9NR99 2828 aa3.65□□□□□ -1.82
PRKDC-202ENST00000338368 LINC01554Q52M75 96 aa3.65□□□□□ -1.82
PRKDC-202ENST00000338368 KRTAP13-2Q52LG2 175 aa3.64□□□□□ -1.83
PRKDC-202ENST00000338368 LINC01558Q9Y6Z2 57 aa3.64□□□□□ -1.83
PRKDC-202ENST00000338368 ZANQ9Y493 2812 aa3.64□□□□□ -1.83
PRKDC-202ENST00000338368 ZFHX3Q15911 3703 aa3.64□□□□□ -1.83
PRKDC-202ENST00000338368 Q5VV11 94 aa3.63□□□□□ -1.83
PRKDC-202ENST00000338368 DCHS2Q6V1P9 2916 aa3.62□□□□□ -1.83
PRKDC-202ENST00000338368 TGP01266 2768 aa3.62□□□□□ -1.83
PRKDC-202ENST00000338368 Q5VSD8 79 aa3.62□□□□□ -1.83
PRKDC-202ENST00000338368 SPINK7P58062 85 aa3.62□□□□□ -1.83
PRKDC-202ENST00000338368 SPINT4Q6UDR6 99 aa3.61□□□□□ -1.83
PRKDC-202ENST00000338368 TENM4Q6N022 2769 aa3.61□□□□□ -1.83
PRKDC-202ENST00000338368 TENM3Q9P273 2699 aa3.61□□□□□ -1.83
PRKDC-202ENST00000338368 CAMK2N1Q7Z7J9 78 aa3.6□□□□□ -1.83
PRKDC-202ENST00000338368 CSMD2Q7Z408 3487 aa3.6□□□□□ -1.83
PRKDC-202ENST00000338368 PDZD2O15018 2839 aa3.59□□□□□ -1.84
PRKDC-202ENST00000338368 SPENQ96T58 3664 aaKnown RBP3.59□□□□□ -1.84
PRKDC-202ENST00000338368 SVEP1Q4LDE5 3571 aa3.59□□□□□ -1.84
PRKDC-202ENST00000338368 PLAC4Q8WY50 150 aa3.58□□□□□ -1.84
PRKDC-202ENST00000338368 S4R3F8 94 aa3.58□□□□□ -1.84
PRKDC-202ENST00000338368 TENM2Q9NT68 2774 aa3.57□□□□□ -1.84
PRKDC-202ENST00000338368 CSMD1Q96PZ7 3565 aa3.56□□□□□ -1.84
PRKDC-202ENST00000338368 KRTAP1-4P0C5Y4 121 aa3.55□□□□□ -1.84
PRKDC-202ENST00000338368 SMG1Q96Q15 3661 aaKnown RBP3.55□□□□□ -1.84
PRKDC-202ENST00000338368 A0A0D9SG42 100 aa3.55□□□□□ -1.84
PRKDC-202ENST00000338368 R4GN34 69 aa3.55□□□□□ -1.84
PRKDC-202ENST00000338368 VWFP04275 2813 aa3.53□□□□□ -1.84
PRKDC-202ENST00000338368 A0A1B0GU33 70 aa3.53□□□□□ -1.84
PRKDC-202ENST00000338368 H3BS24 57 aa3.51□□□□□ -1.85
PRKDC-202ENST00000338368 AKAP9Q99996 3911 aa3.5□□□□□ -1.85
PRKDC-202ENST00000338368 A6NN06 94 aa3.5□□□□□ -1.85
PRKDC-202ENST00000338368 PKD1L1Q8TDX9 2849 aa3.49□□□□□ -1.85
PRKDC-202ENST00000338368 SPATA8Q6RVD6 105 aa3.49□□□□□ -1.85
PRKDC-202ENST00000338368 A0A0A0MQY5 61 aa3.48□□□□□ -1.85
PRKDC-202ENST00000338368 M0QZ58 72 aa3.48□□□□□ -1.85
PRKDC-202ENST00000338368 COL7A1Q02388 2944 aa3.47□□□□□ -1.85
PRKDC-202ENST00000338368 ROMO1P60602 79 aa3.45□□□□□ -1.86
PRKDC-202ENST00000338368 A8MUU9 505 aa3.44□□□□□ -1.86
PRKDC-202ENST00000338368 RPL37P61927 97 aaKnown RBP3.44□□□□□ -1.86
PRKDC-202ENST00000338368 C20orf166-AS1Q96NR2 134 aa3.43□□□□□ -1.86
PRKDC-202ENST00000338368 H1FX-AS1Q4G0G2 97 aa3.43□□□□□ -1.86
PRKDC-202ENST00000338368 KRTAP16-1A8MUX0 517 aa3.42□□□□□ -1.86
PRKDC-202ENST00000338368 OTOGQ6ZRI0 2925 aa3.42□□□□□ -1.86
PRKDC-202ENST00000338368 A0A1B0GVY2 172 aa3.41□□□□□ -1.86
PRKDC-202ENST00000338368 BSNQ9UPA5 3926 aa3.4□□□□□ -1.86
PRKDC-202ENST00000338368 PRO2289Q9P1D8 64 aa3.4□□□□□ -1.86
PRKDC-202ENST00000338368 CUBNO60494 3623 aa3.4□□□□□ -1.86
PRKDC-202ENST00000338368 A8MU10 97 aa3.4□□□□□ -1.87
PRKDC-202ENST00000338368 PRAC1Q96KF2 57 aa3.4□□□□□ -1.87
PRKDC-202ENST00000338368 SRRM2Q9UQ35 2752 aaKnown RBP3.38□□□□□ -1.87
PRKDC-202ENST00000338368 ANK3Q12955 4377 aaKnown RBP3.38□□□□□ -1.87
PRKDC-202ENST00000338368 KRTAP13-3Q3SY46 172 aa3.38□□□□□ -1.87
PRKDC-202ENST00000338368 VPS13CQ709C8 3753 aa3.37□□□□□ -1.87
PRKDC-202ENST00000338368 FBN1P35555 2871 aaKnown RBP3.37□□□□□ -1.87
PRKDC-202ENST00000338368 KRTAP25-1Q3LHN0 102 aa3.36□□□□□ -1.87
PRKDC-202ENST00000338368 TPRXLQ17RH7 258 aa3.36□□□□□ -1.87
PRKDC-202ENST00000338368 XP32Q5T750 250 aa3.36□□□□□ -1.87
PRKDC-202ENST00000338368 KRTAP10-8P60410 259 aa3.35□□□□□ -1.87
PRKDC-202ENST00000338368 ADM2Q7Z4H4 148 aa3.34□□□□□ -1.87
PRKDC-202ENST00000338368 PP632Q6XCG6 107 aa3.32□□□□□ -1.88
PRKDC-202ENST00000338368 TNP1P09430 55 aa3.29□□□□□ -1.88
PRKDC-202ENST00000338368 TRRAPQ9Y4A5 3859 aa3.29□□□□□ -1.88
PRKDC-202ENST00000338368 MEGF8Q7Z7M0 2845 aa3.22□□□□□ -1.89
PRKDC-202ENST00000338368 KRTAP3-1Q9BYR8 98 aa3.21□□□□□ -1.9
PRKDC-202ENST00000338368 KRTAP10-4P60372 401 aaPredicted RBP3.2□□□□□ -1.9
PRKDC-202ENST00000338368 H0YAA0 97 aa3.2□□□□□ -1.9
PRKDC-202ENST00000338368 P0C880 135 aa3.16□□□□□ -1.9
PRKDC-202ENST00000338368 MT1HL1P0DM35 61 aa3.15□□□□□ -1.9
PRKDC-202ENST00000338368 HUWE1Q7Z6Z7 4374 aaKnown RBP3.15□□□□□ -1.91
PRKDC-202ENST00000338368 ZNF469Q96JG9 3925 aaPredicted RBP3.11□□□□□ -1.91
PRKDC-202ENST00000338368 FBN3Q75N90 2809 aa3.11□□□□□ -1.91
PRKDC-202ENST00000338368 NDUFAF8A1L188 74 aa3.11□□□□□ -1.91
PRKDC-202ENST00000338368 DNAH1Q9P2D7 4330 aa3.1□□□□□ -1.91
PRKDC-202ENST00000338368 CMYA5Q8N3K9 4069 aa3.1□□□□□ -1.91
PRKDC-202ENST00000338368 HECTD4Q9Y4D8 3996 aa3.08□□□□□ -1.92
PRKDC-202ENST00000338368 C10orf95Q9H7T3 257 aa3.07□□□□□ -1.92
PRKDC-202ENST00000338368 LYSTQ99698 3801 aa3.07□□□□□ -1.92
PRKDC-202ENST00000338368 DNAH7Q8WXX0 4024 aa3.06□□□□□ -1.92
PRKDC-202ENST00000338368 KRTAP4-5Q9BYR2 181 aa3.05□□□□□ -1.92
PRKDC-202ENST00000338368 KRTAP10-6P60371 365 aaPredicted RBP3.05□□□□□ -1.92
PRKDC-202ENST00000338368 ALMS1Q8TCU4 4167 aa3.05□□□□□ -1.92
PRKDC-202ENST00000338368 KRTAP10-10P60014 251 aa3.04□□□□□ -1.92
PRKDC-202ENST00000338368 DNHD1Q96M86 4753 aa3.04□□□□□ -1.92
PRKDC-202ENST00000338368 DNAH9Q9NYC9 4486 aa3.03□□□□□ -1.92
PRKDC-202ENST00000338368 KRTAP13-4Q3LI77 160 aa3.03□□□□□ -1.92
PRKDC-202ENST00000338368 KRTAP3-3Q9BYR6 98 aa3.02□□□□□ -1.93
PRKDC-202ENST00000338368 DNAH6Q9C0G6 4158 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms