RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 DEFB116Q30KQ4 102 aa5.8□□□□□ -1.48
VIPAS39-201ENST00000327028 RPS28P62857 69 aaKnown RBP5.8□□□□□ -1.48
VIPAS39-201ENST00000327028 CXCL6P80162 114 aa5.79□□□□□ -1.48
VIPAS39-201ENST00000327028 IGKV4-1P06312 121 aa5.79□□□□□ -1.48
VIPAS39-201ENST00000327028 PCLOQ9Y6V0 5065 aa5.78□□□□□ -1.48
VIPAS39-201ENST00000327028 IGKV3D-7A0A0C4DH55 119 aa5.78□□□□□ -1.48
VIPAS39-201ENST00000327028 DSCR10P59022 87 aa5.78□□□□□ -1.48
VIPAS39-201ENST00000327028 SEC61GP60059 68 aa5.77□□□□□ -1.49
VIPAS39-201ENST00000327028 RETNLBQ9BQ08 111 aa5.77□□□□□ -1.49
VIPAS39-201ENST00000327028 A8MWP4 228 aa5.76□□□□□ -1.49
VIPAS39-201ENST00000327028 CYSTM1Q9H1C7 97 aa5.76□□□□□ -1.49
VIPAS39-201ENST00000327028 COX7CP15954 63 aa5.75□□□□□ -1.49
VIPAS39-201ENST00000327028 K7EQZ3 153 aa5.74□□□□□ -1.49
VIPAS39-201ENST00000327028 NDUFB1O75438 58 aa5.74□□□□□ -1.49
VIPAS39-201ENST00000327028 FP248Q71RG6 208 aaPredicted RBP5.74□□□□□ -1.49
VIPAS39-201ENST00000327028 Q8N9L7 120 aa5.74□□□□□ -1.49
VIPAS39-201ENST00000327028 PRO0628Q9UI54 55 aa5.74□□□□□ -1.49
VIPAS39-201ENST00000327028 A0A1B0GVX0 72 aa5.73□□□□□ -1.49
VIPAS39-201ENST00000327028 PRR15Q8IV56 129 aa5.73□□□□□ -1.49
VIPAS39-201ENST00000327028 IMUPQ9GZP8 106 aa5.73□□□□□ -1.49
VIPAS39-201ENST00000327028 IGHV6-1A0A0B4J1U7 121 aa5.71□□□□□ -1.5
VIPAS39-201ENST00000327028 TMEM258P61165 79 aa5.71□□□□□ -1.5
VIPAS39-201ENST00000327028 HIST1H4AP62805 103 aaKnown RBP5.7□□□□□ -1.5
VIPAS39-201ENST00000327028 V9GYY9 64 aa5.69□□□□□ -1.5
VIPAS39-201ENST00000327028 IGLV7-46A0A075B6I9 117 aa5.69□□□□□ -1.5
VIPAS39-201ENST00000327028 C8orf87E5RJ46 101 aa5.69□□□□□ -1.5
VIPAS39-201ENST00000327028 C8orf17Q9NRJ1 99 aa5.68□□□□□ -1.5
VIPAS39-201ENST00000327028 FAM236DA0A1B0GTK5 79 aa5.68□□□□□ -1.5
VIPAS39-201ENST00000327028 FAM236CP0DP71 79 aa5.68□□□□□ -1.5
VIPAS39-201ENST00000327028 PRR4Q16378 134 aa5.68□□□□□ -1.5
VIPAS39-201ENST00000327028 MMP24-AS1A0A0U1RRL7 71 aa5.67□□□□□ -1.5
VIPAS39-201ENST00000327028 A0A087WVE0 104 aa5.67□□□□□ -1.5
VIPAS39-201ENST00000327028 ATOX1O00244 68 aa5.66□□□□□ -1.5
VIPAS39-201ENST00000327028 LINC00313P59037 77 aa5.66□□□□□ -1.5
VIPAS39-201ENST00000327028 NOTCH2NLQ7Z3S9 236 aa5.66□□□□□ -1.5
VIPAS39-201ENST00000327028 HCG22E2RYF7 251 aa5.66□□□□□ -1.5
VIPAS39-201ENST00000327028 A0A0U1RQV1 116 aa5.65□□□□□ -1.51
VIPAS39-201ENST00000327028 KRTAP13-3Q3SY46 172 aa5.64□□□□□ -1.51
VIPAS39-201ENST00000327028 C9orf92A6NGG3 77 aa5.63□□□□□ -1.51
VIPAS39-201ENST00000327028 CASC2Q6XLA1 102 aa5.63□□□□□ -1.51
VIPAS39-201ENST00000327028 hDV103S1A0JD37 113 aa5.63□□□□□ -1.51
VIPAS39-201ENST00000327028 WFDC13Q8IUB5 93 aa5.63□□□□□ -1.51
VIPAS39-201ENST00000327028 TMEM254Q8TBM7 123 aa5.63□□□□□ -1.51
VIPAS39-201ENST00000327028 KRTAP16-1A8MUX0 517 aa5.62□□□□□ -1.51
VIPAS39-201ENST00000327028 TPRXLQ17RH7 258 aa5.62□□□□□ -1.51
VIPAS39-201ENST00000327028 SERP2Q8N6R1 65 aa5.62□□□□□ -1.51
VIPAS39-201ENST00000327028 MRPL34Q9BQ48 92 aaKnown RBP5.61□□□□□ -1.51
VIPAS39-201ENST00000327028 BRK1Q8WUW1 75 aa5.6□□□□□ -1.51
VIPAS39-201ENST00000327028 HERC1Q15751 4861 aa5.59□□□□□ -1.51
VIPAS39-201ENST00000327028 Q8N9P0 234 aaPredicted RBP5.57□□□□□ -1.52
VIPAS39-201ENST00000327028 XP32Q5T750 250 aa5.57□□□□□ -1.52
VIPAS39-201ENST00000327028 C20orf166-AS1Q96NR2 134 aa5.57□□□□□ -1.52
VIPAS39-201ENST00000327028 A8MUU9 505 aa5.56□□□□□ -1.52
VIPAS39-201ENST00000327028 NDUFS5O43920 106 aa5.54□□□□□ -1.52
VIPAS39-201ENST00000327028 Q75L30 129 aa5.54□□□□□ -1.52
VIPAS39-201ENST00000327028 SERP1Q9Y6X1 66 aa5.54□□□□□ -1.52
VIPAS39-201ENST00000327028 HMCN2Q8NDA2 5059 aa5.54□□□□□ -1.52
VIPAS39-201ENST00000327028 C20orf197Q8N268 126 aa5.53□□□□□ -1.52
VIPAS39-201ENST00000327028 RPL37P61927 97 aaKnown RBP5.52□□□□□ -1.53
VIPAS39-201ENST00000327028 OCR1Q9BZK8 76 aa5.52□□□□□ -1.53
VIPAS39-201ENST00000327028 TP53AIP1Q9HCN2 124 aa5.52□□□□□ -1.53
VIPAS39-201ENST00000327028 LPAP08519 4548 aa5.51□□□□□ -1.53
VIPAS39-201ENST00000327028 SMIM26A0A096LP01 95 aa5.51□□□□□ -1.53
VIPAS39-201ENST00000327028 TRAV7A0A075B6U4 112 aa5.48□□□□□ -1.53
VIPAS39-201ENST00000327028 H7BZZ5 65 aa5.48□□□□□ -1.53
VIPAS39-201ENST00000327028 ZCCHC13Q8WW36 166 aaKnown RBP5.48□□□□□ -1.53
VIPAS39-201ENST00000327028 PMAIP1Q13794 54 aa5.46□□□□□ -1.53
VIPAS39-201ENST00000327028 ATP11AUNQ6ZP68 121 aa5.46□□□□□ -1.54
VIPAS39-201ENST00000327028 Q5W150 140 aa5.45□□□□□ -1.54
VIPAS39-201ENST00000327028 MPLKIPQ8TAP9 179 aa5.45□□□□□ -1.54
VIPAS39-201ENST00000327028 LRP2P98164 4655 aa5.45□□□□□ -1.54
VIPAS39-201ENST00000327028 TRAV22A0A0B4J277 110 aa5.45□□□□□ -1.54
VIPAS39-201ENST00000327028 SNURFQ9Y675 71 aa5.44□□□□□ -1.54
VIPAS39-201ENST00000327028 H0Y9P7 68 aa5.43□□□□□ -1.54
VIPAS39-201ENST00000327028 SEC61BP60468 96 aaKnown RBP5.43□□□□□ -1.54
VIPAS39-201ENST00000327028 PCOTHQ58A44 107 aa5.43□□□□□ -1.54
VIPAS39-201ENST00000327028 MUC17Q685J3 4493 aa5.42□□□□□ -1.54
VIPAS39-201ENST00000327028 MP68P56378 58 aa5.42□□□□□ -1.54
VIPAS39-201ENST00000327028 H3BPC8 53 aa5.39□□□□□ -1.55
VIPAS39-201ENST00000327028 KLKP1Q107X0 134 aa5.39□□□□□ -1.55
VIPAS39-201ENST00000327028 LOC101927531A0A1B0GV80 90 aa5.38□□□□□ -1.55
VIPAS39-201ENST00000327028 IGKV2-30P06310 120 aa5.38□□□□□ -1.55
VIPAS39-201ENST00000327028 LINC00208Q96KT6 92 aa5.37□□□□□ -1.55
VIPAS39-201ENST00000327028 C1orf64Q8NEQ6 169 aa5.37□□□□□ -1.55
VIPAS39-201ENST00000327028 IGKV2D-30A0A075B6S6 120 aa5.36□□□□□ -1.55
VIPAS39-201ENST00000327028 C7orf65Q6ZTY9 151 aa5.36□□□□□ -1.55
VIPAS39-201ENST00000327028 SPINK7P58062 85 aa5.34□□□□□ -1.55
VIPAS39-201ENST00000327028 CYP4F30PQ9H0H9 118 aa5.34□□□□□ -1.55
VIPAS39-201ENST00000327028 ATP5EP56381 51 aaPredicted RBP5.32□□□□□ -1.56
VIPAS39-201ENST00000327028 NDUFC1O43677 76 aa5.31□□□□□ -1.56
VIPAS39-201ENST00000327028 KRTAP4-1Q9BYQ7 146 aa5.3□□□□□ -1.56
VIPAS39-201ENST00000327028 UBR4Q5T4S7 5183 aa5.29□□□□□ -1.56
VIPAS39-201ENST00000327028 HRES1P13985 223 aa5.27□□□□□ -1.57
VIPAS39-201ENST00000327028 RBM12B-AS1Q9P1G2 102 aa5.27□□□□□ -1.57
VIPAS39-201ENST00000327028 PSPHP1O15172 72 aa5.26□□□□□ -1.57
VIPAS39-201ENST00000327028 RNF213Q63HN8 5207 aa5.24□□□□□ -1.57
VIPAS39-201ENST00000327028 A8MU10 97 aa5.23□□□□□ -1.57
VIPAS39-201ENST00000327028 KTN1-AS1Q86SY8 53 aa5.21□□□□□ -1.58
VIPAS39-201ENST00000327028 Q1T7F1 81 aa5.2□□□□□ -1.58
VIPAS39-201ENST00000327028 COX6B2Q6YFQ2 88 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms