RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 UNC80Q8N2C7 3258 aa9.49□□□□□ -0.89
SMCHD1-201ENST00000320876 USP34Q70CQ2 3546 aa9.48□□□□□ -0.89
SMCHD1-201ENST00000320876 LAMA1P25391 3075 aa9.48□□□□□ -0.89
SMCHD1-201ENST00000320876 KRTAP11-1Q8IUC1 163 aa9.47□□□□□ -0.89
SMCHD1-201ENST00000320876 CRYBG3Q68DQ2 2970 aa9.47□□□□□ -0.89
SMCHD1-201ENST00000320876 HTTP42858 3142 aa9.47□□□□□ -0.89
SMCHD1-201ENST00000320876 CELSR2Q9HCU4 2923 aa9.47□□□□□ -0.89
SMCHD1-201ENST00000320876 PP632Q6XCG6 107 aa9.44□□□□□ -0.9
SMCHD1-201ENST00000320876 COL6A3P12111 3177 aa9.39□□□□□ -0.91
SMCHD1-201ENST00000320876 TENM1Q9UKZ4 2725 aa9.38□□□□□ -0.91
SMCHD1-201ENST00000320876 NF1P21359 2839 aa9.38□□□□□ -0.91
SMCHD1-201ENST00000320876 NIPBLQ6KC79 2804 aaeCLIP9.38□□□□□ -0.915e-6■□□□□ 10.4
SMCHD1-201ENST00000320876 CDH23Q9H251 3354 aa9.38□□□□□ -0.91
SMCHD1-201ENST00000320876 ZZEF1O43149 2961 aa9.37□□□□□ -0.91
SMCHD1-201ENST00000320876 KRTAP13-1Q8IUC0 172 aa9.34□□□□□ -0.91
SMCHD1-201ENST00000320876 Q6ZRN7 208 aaPredicted RBP9.34□□□□□ -0.91
SMCHD1-201ENST00000320876 BOD1L1Q8NFC6 3051 aa9.33□□□□□ -0.92
SMCHD1-201ENST00000320876 KRTAP13-2Q52LG2 175 aa9.31□□□□□ -0.92
SMCHD1-201ENST00000320876 TGP01266 2768 aa9.29□□□□□ -0.92
SMCHD1-201ENST00000320876 KRTAP7-1Q8IUC3 87 aa9.28□□□□□ -0.92
SMCHD1-201ENST00000320876 VCANP13611 3396 aa9.27□□□□□ -0.93
SMCHD1-201ENST00000320876 TENM3Q9P273 2699 aa9.22□□□□□ -0.93
SMCHD1-201ENST00000320876 ADGRG4Q8IZF6 3080 aa9.22□□□□□ -0.93
SMCHD1-201ENST00000320876 DCHS2Q6V1P9 2916 aa9.21□□□□□ -0.93
SMCHD1-201ENST00000320876 TNRC18O15417 2968 aaPredicted RBP9.2□□□□□ -0.94
SMCHD1-201ENST00000320876 SZT2Q5T011 3432 aa9.19□□□□□ -0.94
SMCHD1-201ENST00000320876 ZANQ9Y493 2812 aa9.16□□□□□ -0.94
SMCHD1-201ENST00000320876 DMXL1Q9Y485 3027 aa9.15□□□□□ -0.95
SMCHD1-201ENST00000320876 H0YAA0 97 aa9.14□□□□□ -0.95
SMCHD1-201ENST00000320876 PDZD2O15018 2839 aa9.13□□□□□ -0.95
SMCHD1-201ENST00000320876 P0C880 135 aa9.12□□□□□ -0.95
SMCHD1-201ENST00000320876 ATMQ13315 3056 aa9.12□□□□□ -0.95
SMCHD1-201ENST00000320876 CFAP47Q6ZTR5 3102 aa9.11□□□□□ -0.95
SMCHD1-201ENST00000320876 SPEGQ15772 3267 aa9.1□□□□□ -0.95
SMCHD1-201ENST00000320876 FBN2P35556 2912 aa9.08□□□□□ -0.96
SMCHD1-201ENST00000320876 SPTBN5Q9NRC6 3674 aaKnown RBP9.04□□□□□ -0.96
SMCHD1-201ENST00000320876 HRNRQ86YZ3 2850 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-201ENST00000320876 KRTAP10-8P60410 259 aa9.02□□□□□ -0.97
SMCHD1-201ENST00000320876 CELSR1Q9NYQ6 3014 aa8.96□□□□□ -0.97
SMCHD1-201ENST00000320876 TENM4Q6N022 2769 aa8.91□□□□□ -0.98
SMCHD1-201ENST00000320876 MXRA5Q9NR99 2828 aa8.9□□□□□ -0.98
SMCHD1-201ENST00000320876 XP32Q5T750 250 aa8.9□□□□□ -0.98
SMCHD1-201ENST00000320876 WDFY3Q8IZQ1 3526 aa8.88□□□□□ -0.99
SMCHD1-201ENST00000320876 PRO2289Q9P1D8 64 aa8.88□□□□□ -0.99
SMCHD1-201ENST00000320876 VWFP04275 2813 aa8.83□□□□□ -1
SMCHD1-201ENST00000320876 SRRM2Q9UQ35 2752 aaKnown RBP8.77□□□□□ -1.01
SMCHD1-201ENST00000320876 TPRXLQ17RH7 258 aa8.76□□□□□ -1.01
SMCHD1-201ENST00000320876 KRTAP1-4P0C5Y4 121 aa8.76□□□□□ -1.01
SMCHD1-201ENST00000320876 EYSQ5T1H1 3165 aa8.75□□□□□ -1.01
SMCHD1-201ENST00000320876 MYO15AQ9UKN7 3530 aa8.74□□□□□ -1.01
SMCHD1-201ENST00000320876 PKD1L1Q8TDX9 2849 aa8.73□□□□□ -1.01
SMCHD1-201ENST00000320876 A0A1B0GVY2 172 aa8.69□□□□□ -1.02
SMCHD1-201ENST00000320876 ASPMQ8IZT6 3477 aa8.65□□□□□ -1.03
SMCHD1-201ENST00000320876 NBPF19A0A087WUL8 3843 aa8.63□□□□□ -1.03
SMCHD1-201ENST00000320876 KRTAP10-10P60014 251 aa8.62□□□□□ -1.03
SMCHD1-201ENST00000320876 LAMA5O15230 3695 aa8.56□□□□□ -1.04
SMCHD1-201ENST00000320876 KRTAP13-3Q3SY46 172 aa8.52□□□□□ -1.05
SMCHD1-201ENST00000320876 LOC400499M0QZD8 3231 aa8.52□□□□□ -1.05
SMCHD1-201ENST00000320876 KRTAP12-2P59991 146 aa8.51□□□□□ -1.05
SMCHD1-201ENST00000320876 TENM2Q9NT68 2774 aa8.51□□□□□ -1.05
SMCHD1-201ENST00000320876 KRTAP13-4Q3LI77 160 aa8.49□□□□□ -1.05
SMCHD1-201ENST00000320876 KRTAP21-3Q3LHN1 58 aa8.48□□□□□ -1.05
SMCHD1-201ENST00000320876 ZFHX4Q86UP3 3567 aa8.47□□□□□ -1.05
SMCHD1-201ENST00000320876 DCHS1Q96JQ0 3298 aa8.43□□□□□ -1.06
SMCHD1-201ENST00000320876 COL7A1Q02388 2944 aa8.42□□□□□ -1.06
SMCHD1-201ENST00000320876 SMG1Q96Q15 3661 aaKnown RBP8.41□□□□□ -1.06
SMCHD1-201ENST00000320876 SPENQ96T58 3664 aaKnown RBP8.38□□□□□ -1.07
SMCHD1-201ENST00000320876 CSMD1Q96PZ7 3565 aa8.34□□□□□ -1.07
SMCHD1-201ENST00000320876 RELNP78509 3460 aa8.34□□□□□ -1.07
SMCHD1-201ENST00000320876 ZFHX3Q15911 3703 aa8.34□□□□□ -1.08
SMCHD1-201ENST00000320876 DMDP11532 3685 aa8.33□□□□□ -1.08
SMCHD1-201ENST00000320876 MEGF8Q7Z7M0 2845 aa8.3□□□□□ -1.08
SMCHD1-201ENST00000320876 KRTAP12-1P59990 96 aa8.3□□□□□ -1.08
SMCHD1-201ENST00000320876 FBN1P35555 2871 aaKnown RBP8.17□□□□□ -1.1
SMCHD1-201ENST00000320876 INE1O15225 51 aa8.16□□□□□ -1.1
SMCHD1-201ENST00000320876 KRTAP15-1Q3LI76 137 aa8.14□□□□□ -1.11
SMCHD1-201ENST00000320876 FBN3Q75N90 2809 aa8.14□□□□□ -1.11
SMCHD1-201ENST00000320876 VPS13CQ709C8 3753 aa8.06□□□□□ -1.12
SMCHD1-201ENST00000320876 SVEP1Q4LDE5 3571 aa7.96□□□□□ -1.14
SMCHD1-201ENST00000320876 TRRAPQ9Y4A5 3859 aa7.96□□□□□ -1.14
SMCHD1-201ENST00000320876 KRTAP3-1Q9BYR8 98 aa7.94□□□□□ -1.14
SMCHD1-201ENST00000320876 OTOGQ6ZRI0 2925 aa7.94□□□□□ -1.14
SMCHD1-201ENST00000320876 CUBNO60494 3623 aa7.92□□□□□ -1.14
SMCHD1-201ENST00000320876 KRTAP10-6P60371 365 aaPredicted RBP7.86□□□□□ -1.15
SMCHD1-201ENST00000320876 AKAP9Q99996 3911 aa7.82□□□□□ -1.16
SMCHD1-201ENST00000320876 MUC3AQ02505 3323 aa7.69□□□□□ -1.18
SMCHD1-201ENST00000320876 KRTAP10-12P60413 245 aa7.68□□□□□ -1.18
SMCHD1-201ENST00000320876 CSMD3Q7Z407 3707 aa7.66□□□□□ -1.18
SMCHD1-201ENST00000320876 KRTAP23-1A1A580 65 aa7.56□□□□□ -1.2
SMCHD1-201ENST00000320876 BSNQ9UPA5 3926 aa7.55□□□□□ -1.2
SMCHD1-201ENST00000320876 KRTAP3-2Q9BYR7 98 aa7.5□□□□□ -1.21
SMCHD1-201ENST00000320876 KRTAP3-3Q9BYR6 98 aa7.47□□□□□ -1.21
SMCHD1-201ENST00000320876 CRCT1Q9UGL9 99 aa7.46□□□□□ -1.22
SMCHD1-201ENST00000320876 KRTAP12-3P60328 96 aa7.45□□□□□ -1.22
SMCHD1-201ENST00000320876 CSMD2Q7Z408 3487 aa7.41□□□□□ -1.22
SMCHD1-201ENST00000320876 ALMS1Q8TCU4 4167 aa7.39□□□□□ -1.23
SMCHD1-201ENST00000320876 LCE3AQ5TA76 89 aa7.25□□□□□ -1.25
SMCHD1-201ENST00000320876 MT1HL1P0DM35 61 aa7.16□□□□□ -1.26
SMCHD1-201ENST00000320876 KRTAP10-5P60370 271 aa7.09□□□□□ -1.27
SMCHD1-201ENST00000320876 LYSTQ99698 3801 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms