RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 LCA10Q71F78 164 aa11.34□□□□□ -0.59
RTN4-201ENST00000317610 SEC61GP60059 68 aa11.32□□□□□ -0.6
RTN4-201ENST00000317610 HRES1P13985 223 aa11.32□□□□□ -0.6
RTN4-201ENST00000317610 ANAPC11Q9NYG5 84 aa11.32□□□□□ -0.6
RTN4-201ENST00000317610 A6NED7 52 aa11.31□□□□□ -0.6
RTN4-201ENST00000317610 DNAH17Q9UFH2 4485 aa11.31□□□□□ -0.6
RTN4-201ENST00000317610 RTL8CO15255 209 aa11.3□□□□□ -0.6
RTN4-201ENST00000317610 HECTD4Q9Y4D8 3996 aa11.3□□□□□ -0.6
RTN4-201ENST00000317610 ATP11AUNQ6ZP68 121 aa11.29□□□□□ -0.6
RTN4-201ENST00000317610 SPAG11AQ6PDA7 123 aa11.29□□□□□ -0.6
RTN4-201ENST00000317610 KRTAP13-3Q3SY46 172 aa11.27□□□□□ -0.6
RTN4-201ENST00000317610 CDC42SE1Q9NRR8 79 aa11.26□□□□□ -0.61
RTN4-201ENST00000317610 FRAS1Q86XX4 4008 aa11.23□□□□□ -0.61
RTN4-201ENST00000317610 STARD9Q9P2P6 4700 aa11.23□□□□□ -0.61
RTN4-201ENST00000317610 Q5W150 140 aa11.23□□□□□ -0.61
RTN4-201ENST00000317610 SPTSSBQ8NFR3 76 aa11.21□□□□□ -0.62
RTN4-201ENST00000317610 PRKDCP78527 4128 aaKnown RBP11.19□□□□□ -0.62
RTN4-201ENST00000317610 SPINK6Q6UWN8 80 aa11.18□□□□□ -0.62
RTN4-201ENST00000317610 DNAH2Q9P225 4427 aa11.18□□□□□ -0.62
RTN4-201ENST00000317610 IGLV7-43P04211 117 aa11.18□□□□□ -0.62
RTN4-201ENST00000317610 KTN1-AS1Q86SY8 53 aa11.18□□□□□ -0.62
RTN4-201ENST00000317610 A6NN06 94 aa11.17□□□□□ -0.62
RTN4-201ENST00000317610 C8orf87E5RJ46 101 aa11.16□□□□□ -0.62
RTN4-201ENST00000317610 ALMS1Q8TCU4 4167 aa11.14□□□□□ -0.63
RTN4-201ENST00000317610 SPINK7P58062 85 aa11.13□□□□□ -0.63
RTN4-201ENST00000317610 CIRBP-AS1Q8TBR5 109 aa11.13□□□□□ -0.63
RTN4-201ENST00000317610 SSBP3-AS1Q7Z2R9 100 aa11.12□□□□□ -0.63
RTN4-201ENST00000317610 PRR26Q8N8Z3 221 aa11.1□□□□□ -0.63
RTN4-201ENST00000317610 ACYP2P14621 99 aa11.09□□□□□ -0.63
RTN4-201ENST00000317610 KMT2AQ03164 3969 aa11.06□□□□□ -0.64
RTN4-201ENST00000317610 DMAC1Q96GE9 116 aa11.06□□□□□ -0.64
RTN4-201ENST00000317610 FBN3Q75N90 2809 aa11.04□□□□□ -0.64
RTN4-201ENST00000317610 FAM229AH3BQW9 127 aa11.02□□□□□ -0.64
RTN4-201ENST00000317610 LINC00313P59037 77 aa11.02□□□□□ -0.64
RTN4-201ENST00000317610 C1orf134Q5TEV5 83 aa11.02□□□□□ -0.65
RTN4-201ENST00000317610 DNAH11Q96DT5 4516 aa10.99□□□□□ -0.65
RTN4-201ENST00000317610 IGKV2-30P06310 120 aa10.97□□□□□ -0.65
RTN4-201ENST00000317610 C7orf65Q6ZTY9 151 aa10.96□□□□□ -0.65
RTN4-201ENST00000317610 RBM12B-AS1Q9P1G2 102 aa10.94□□□□□ -0.66
RTN4-201ENST00000317610 KRTAP13-2Q52LG2 175 aa10.93□□□□□ -0.66
RTN4-201ENST00000317610 DNAH5Q8TE73 4624 aa10.93□□□□□ -0.66
RTN4-201ENST00000317610 KRTAP16-1A8MUX0 517 aa10.93□□□□□ -0.66
RTN4-201ENST00000317610 MEGF8Q7Z7M0 2845 aa10.92□□□□□ -0.66
RTN4-201ENST00000317610 DNAH6Q9C0G6 4158 aa10.9□□□□□ -0.66
RTN4-201ENST00000317610 RETNLBQ9BQ08 111 aa10.89□□□□□ -0.67
RTN4-201ENST00000317610 KRTAP10-2P60368 255 aa10.85□□□□□ -0.67
RTN4-201ENST00000317610 A0A1B0GU69 56 aa10.85□□□□□ -0.67
RTN4-201ENST00000317610 TGP01266 2768 aa10.85□□□□□ -0.67
RTN4-201ENST00000317610 Q6ZSA8 131 aa10.81□□□□□ -0.68
RTN4-201ENST00000317610 LY6G6CO95867 125 aa10.8□□□□□ -0.68
RTN4-201ENST00000317610 SPATA8Q6RVD6 105 aa10.8□□□□□ -0.68
RTN4-201ENST00000317610 KRTAP1-4P0C5Y4 121 aa10.79□□□□□ -0.68
RTN4-201ENST00000317610 DNHD1Q96M86 4753 aa10.78□□□□□ -0.68
RTN4-201ENST00000317610 LRP1BQ9NZR2 4599 aa10.77□□□□□ -0.69
RTN4-201ENST00000317610 KRTAP21-3Q3LHN1 58 aa10.76□□□□□ -0.69
RTN4-201ENST00000317610 IGKV2D-30A0A075B6S6 120 aa10.74□□□□□ -0.69
RTN4-201ENST00000317610 KRTAP10-1P60331 282 aa10.73□□□□□ -0.69
RTN4-201ENST00000317610 PKD1P98161 4303 aa10.71□□□□□ -0.7
RTN4-201ENST00000317610 UQCR11O14957 56 aa10.69□□□□□ -0.7
RTN4-201ENST00000317610 MIR22HGQ0VDD5 57 aa10.68□□□□□ -0.7
RTN4-201ENST00000317610 PLA2G1BP04054 148 aaKnown RBP10.68□□□□□ -0.7
RTN4-201ENST00000317610 FAT2Q9NYQ8 4349 aa10.64□□□□□ -0.71
RTN4-201ENST00000317610 SPINK1P00995 79 aa10.63□□□□□ -0.71
RTN4-201ENST00000317610 C4orf48Q5BLP8 95 aa10.63□□□□□ -0.71
RTN4-201ENST00000317610 VPS13BQ7Z7G8 4022 aa10.61□□□□□ -0.71
RTN4-201ENST00000317610 TYMSOSQ8TAI1 123 aa10.61□□□□□ -0.71
RTN4-201ENST00000317610 PRAC1Q96KF2 57 aa10.59□□□□□ -0.71
RTN4-201ENST00000317610 ADM2Q7Z4H4 148 aa10.56□□□□□ -0.72
RTN4-201ENST00000317610 RPS29P62273 56 aaKnown RBP10.53□□□□□ -0.72
RTN4-201ENST00000317610 SACSQ9NZJ4 4579 aa10.51□□□□□ -0.73
RTN4-201ENST00000317610 HYDINQ4G0P3 5121 aa10.5□□□□□ -0.73
RTN4-201ENST00000317610 Q8N1X5 172 aa10.5□□□□□ -0.73
RTN4-201ENST00000317610 LINC00304Q8N9R0 145 aa10.46□□□□□ -0.73
RTN4-201ENST00000317610 A8MUU9 505 aa10.38□□□□□ -0.75
RTN4-201ENST00000317610 C20orf166-AS1Q96NR2 134 aa10.37□□□□□ -0.75
RTN4-201ENST00000317610 LINC01554Q52M75 96 aa10.36□□□□□ -0.75
RTN4-201ENST00000317610 PKHD1L1Q86WI1 4243 aa10.32□□□□□ -0.76
RTN4-201ENST00000317610 KRTAP3-1Q9BYR8 98 aa10.31□□□□□ -0.76
RTN4-201ENST00000317610 H0YAA0 97 aa10.3□□□□□ -0.76
RTN4-201ENST00000317610 CSAG1Q6PB30 78 aa10.28□□□□□ -0.76
RTN4-201ENST00000317610 C9orf92A6NGG3 77 aa10.27□□□□□ -0.77
RTN4-201ENST00000317610 PKHD1P08F94 4074 aa10.24□□□□□ -0.77
RTN4-201ENST00000317610 A0A1B0GU33 70 aa10.21□□□□□ -0.77
RTN4-201ENST00000317610 APOBP04114 4563 aaKnown RBP10.21□□□□□ -0.77
RTN4-201ENST00000317610 DYNC1H1Q14204 4646 aaKnown RBP10.2□□□□□ -0.78
RTN4-201ENST00000317610 H1FX-AS1Q4G0G2 97 aa10.19□□□□□ -0.78
RTN4-201ENST00000317610 SMR3BP02814 79 aaPredicted RBP10.16□□□□□ -0.78
RTN4-201ENST00000317610 KRTAP10-4P60372 401 aaPredicted RBP10.16□□□□□ -0.78
RTN4-201ENST00000317610 COX6B2Q6YFQ2 88 aa10.1□□□□□ -0.79
RTN4-201ENST00000317610 FAT1Q14517 4588 aa10.09□□□□□ -0.79
RTN4-201ENST00000317610 A0A1B0GVY2 172 aa10.04□□□□□ -0.8
RTN4-201ENST00000317610 KRTAP25-1Q3LHN0 102 aa10.02□□□□□ -0.81
RTN4-201ENST00000317610 FLG2Q5D862 2391 aaPredicted RBP9.93□□□□□ -0.82
RTN4-201ENST00000317610 K7ERS5 55 aa9.92□□□□□ -0.82
RTN4-201ENST00000317610 FAT3Q8TDW7 4589 aa9.91□□□□□ -0.82
RTN4-201ENST00000317610 KRTAP3-3Q9BYR6 98 aa9.87□□□□□ -0.83
RTN4-201ENST00000317610 KRTAP10-6P60371 365 aaPredicted RBP9.86□□□□□ -0.83
RTN4-201ENST00000317610 TNXBP22105 4242 aa9.82□□□□□ -0.84
RTN4-201ENST00000317610 RPL37P61927 97 aaKnown RBP9.79□□□□□ -0.84
RTN4-201ENST00000317610 KRTAP3-2Q9BYR7 98 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms