RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 BSNQ9UPA5 3926 aa4.09□□□□□ -1.75
LIMCH1-201ENST00000313860 SETXQ7Z333 2677 aaKnown RBP4.09□□□□□ -1.75
LIMCH1-201ENST00000313860 LRRK2Q5S007 2527 aa4.08□□□□□ -1.76
LIMCH1-201ENST00000313860 ZANQ9Y493 2812 aa4.08□□□□□ -1.76
LIMCH1-201ENST00000313860 KRTAP10-1P60331 282 aa4.07□□□□□ -1.76
LIMCH1-201ENST00000313860 CELSR2Q9HCU4 2923 aa4.07□□□□□ -1.76
LIMCH1-201ENST00000313860 NIPBLQ6KC79 2804 aaeCLIP4.07□□□□□ -1.76
LIMCH1-201ENST00000313860 DMBT1Q9UGM3 2413 aaPredicted RBP4.07□□□□□ -1.76
LIMCH1-201ENST00000313860 INE1O15225 51 aa4.06□□□□□ -1.76
LIMCH1-201ENST00000313860 EPG5Q9HCE0 2579 aa4.06□□□□□ -1.76
LIMCH1-201ENST00000313860 KRTAP10-10P60014 251 aa4.05□□□□□ -1.76
LIMCH1-201ENST00000313860 UTP20O75691 2785 aaKnown RBP4.04□□□□□ -1.76
LIMCH1-201ENST00000313860 SETD2Q9BYW2 2564 aaPredicted RBP4.04□□□□□ -1.76
LIMCH1-201ENST00000313860 KRTAP15-1Q3LI76 137 aa4.03□□□□□ -1.76
LIMCH1-201ENST00000313860 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
LIMCH1-201ENST00000313860 KRTAP10-2P60368 255 aa4.03□□□□□ -1.76
LIMCH1-201ENST00000313860 CFAP46Q8IYW2 2715 aa4.03□□□□□ -1.76
LIMCH1-201ENST00000313860 NF1P21359 2839 aa4.03□□□□□ -1.76
LIMCH1-201ENST00000313860 NBEAL2Q6ZNJ1 2754 aa4.03□□□□□ -1.76
LIMCH1-201ENST00000313860 FBN2P35556 2912 aa4.02□□□□□ -1.77
LIMCH1-201ENST00000313860 GCN1Q92616 2671 aaKnown RBP4.02□□□□□ -1.77
LIMCH1-201ENST00000313860 ABCA12Q86UK0 2595 aa4□□□□□ -1.77
LIMCH1-201ENST00000313860 CSMD2Q7Z408 3487 aa4□□□□□ -1.77
LIMCH1-201ENST00000313860 CUBNO60494 3623 aa3.98□□□□□ -1.77
LIMCH1-201ENST00000313860 IGF2RP11717 2491 aa3.98□□□□□ -1.77
LIMCH1-201ENST00000313860 KRTAP1-5Q9BYS1 174 aa3.98□□□□□ -1.77
LIMCH1-201ENST00000313860 KRTAP10-7P60409 375 aaPredicted RBP3.98□□□□□ -1.77
LIMCH1-201ENST00000313860 KRTAP13-2Q52LG2 175 aa3.98□□□□□ -1.77
LIMCH1-201ENST00000313860 TEX15Q9BXT5 2789 aa3.98□□□□□ -1.77
LIMCH1-201ENST00000313860 CHD8Q9HCK8 2581 aa3.97□□□□□ -1.77
LIMCH1-201ENST00000313860 OTOGQ6ZRI0 2925 aa3.96□□□□□ -1.78
LIMCH1-201ENST00000313860 FLNCQ14315 2725 aa3.94□□□□□ -1.78
LIMCH1-201ENST00000313860 CENPEQ02224 2701 aa3.94□□□□□ -1.78
LIMCH1-201ENST00000313860 VPS13CQ709C8 3753 aa3.93□□□□□ -1.78
LIMCH1-201ENST00000313860 POLQO75417 2590 aa3.92□□□□□ -1.78
LIMCH1-201ENST00000313860 SPTBN4Q9H254 2564 aa3.92□□□□□ -1.78
LIMCH1-201ENST00000313860 XP32Q5T750 250 aa3.92□□□□□ -1.78
LIMCH1-201ENST00000313860 MTORP42345 2549 aa3.92□□□□□ -1.78
LIMCH1-201ENST00000313860 KRTAP10-6P60371 365 aaPredicted RBP3.91□□□□□ -1.78
LIMCH1-201ENST00000313860 UNC79Q9P2D8 2635 aa3.91□□□□□ -1.78
LIMCH1-201ENST00000313860 NBPF19A0A087WUL8 3843 aa3.9□□□□□ -1.79
LIMCH1-201ENST00000313860 RPS29P62273 56 aaKnown RBP3.89□□□□□ -1.79
LIMCH1-201ENST00000313860 TPRXLQ17RH7 258 aa3.88□□□□□ -1.79
LIMCH1-201ENST00000313860 KRTAP13-4Q3LI77 160 aa3.87□□□□□ -1.79
LIMCH1-201ENST00000313860 KRTAP1-3Q8IUG1 177 aa3.85□□□□□ -1.79
LIMCH1-201ENST00000313860 ITPR3Q14573 2671 aa3.85□□□□□ -1.79
LIMCH1-201ENST00000313860 KRTAP1-1Q07627 177 aa3.83□□□□□ -1.8
LIMCH1-201ENST00000313860 VWFP04275 2813 aa3.82□□□□□ -1.8
LIMCH1-201ENST00000313860 HIVEP1P15822 2718 aa3.81□□□□□ -1.8
LIMCH1-201ENST00000313860 TENM2Q9NT68 2774 aa3.81□□□□□ -1.8
LIMCH1-201ENST00000313860 UBR5O95071 2799 aaPredicted RBP3.81□□□□□ -1.8
LIMCH1-201ENST00000313860 KRTAP7-1Q8IUC3 87 aa3.81□□□□□ -1.8
LIMCH1-201ENST00000313860 SRRM2Q9UQ35 2752 aaKnown RBP3.8□□□□□ -1.8
LIMCH1-201ENST00000313860 PKD1L1Q8TDX9 2849 aa3.8□□□□□ -1.8
LIMCH1-201ENST00000313860 AKAP9Q99996 3911 aa3.8□□□□□ -1.8
LIMCH1-201ENST00000313860 BAHCC1Q9P281 2608 aa3.79□□□□□ -1.8
LIMCH1-201ENST00000313860 TEP1Q99973 2627 aaKnown RBP3.78□□□□□ -1.8
LIMCH1-201ENST00000313860 KRTAP10-5P60370 271 aa3.76□□□□□ -1.81
LIMCH1-201ENST00000313860 FLNAP21333 2647 aaKnown RBP3.76□□□□□ -1.81
LIMCH1-201ENST00000313860 HELZ2Q9BYK8 2649 aaKnown RBP3.76□□□□□ -1.81
LIMCH1-201ENST00000313860 USP24Q9UPU5 2620 aa3.74□□□□□ -1.81
LIMCH1-201ENST00000313860 FASNP49327 2511 aaKnown RBP3.74□□□□□ -1.81
LIMCH1-201ENST00000313860 STAB2Q8WWQ8 2551 aa3.73□□□□□ -1.81
LIMCH1-201ENST00000313860 IGSF10Q6WRI0 2623 aa3.7□□□□□ -1.82
LIMCH1-201ENST00000313860 PDZD2O15018 2839 aa3.69□□□□□ -1.82
LIMCH1-201ENST00000313860 TENM3Q9P273 2699 aa3.69□□□□□ -1.82
LIMCH1-201ENST00000313860 KRTAP12-1P59990 96 aa3.68□□□□□ -1.82
LIMCH1-201ENST00000313860 KRTAP13-3Q3SY46 172 aa3.68□□□□□ -1.82
LIMCH1-201ENST00000313860 TENM1Q9UKZ4 2725 aa3.67□□□□□ -1.82
LIMCH1-201ENST00000313860 FBN1P35555 2871 aaKnown RBP3.65□□□□□ -1.83
LIMCH1-201ENST00000313860 NBEAL1Q6ZS30 2694 aa3.65□□□□□ -1.83
LIMCH1-201ENST00000313860 COL7A1Q02388 2944 aa3.64□□□□□ -1.83
LIMCH1-201ENST00000313860 ZNF469Q96JG9 3925 aaPredicted RBP3.64□□□□□ -1.83
LIMCH1-201ENST00000313860 KRTAP13-1Q8IUC0 172 aa3.63□□□□□ -1.83
LIMCH1-201ENST00000313860 ATRQ13535 2644 aa3.63□□□□□ -1.83
LIMCH1-201ENST00000313860 NOTCH1P46531 2555 aa3.63□□□□□ -1.83
LIMCH1-201ENST00000313860 ANK3Q12955 4377 aaKnown RBP3.63□□□□□ -1.83
LIMCH1-201ENST00000313860 TENM4Q6N022 2769 aa3.62□□□□□ -1.83
LIMCH1-201ENST00000313860 HECTD1Q9ULT8 2610 aa3.62□□□□□ -1.83
LIMCH1-201ENST00000313860 ALMS1Q8TCU4 4167 aa3.62□□□□□ -1.83
LIMCH1-201ENST00000313860 MGAM2Q2M2H8 2515 aa3.61□□□□□ -1.83
LIMCH1-201ENST00000313860 ITPR2Q14571 2701 aa3.6□□□□□ -1.83
LIMCH1-201ENST00000313860 FLNBO75369 2602 aaKnown RBP3.58□□□□□ -1.84
LIMCH1-201ENST00000313860 COL6A5A8TX70 2615 aa3.57□□□□□ -1.84
LIMCH1-201ENST00000313860 MEGF8Q7Z7M0 2845 aa3.56□□□□□ -1.84
LIMCH1-201ENST00000313860 KMT2BQ9UMN6 2715 aaPredicted RBP3.56□□□□□ -1.84
LIMCH1-201ENST00000313860 MAST4O15021 2626 aa3.55□□□□□ -1.84
LIMCH1-201ENST00000313860 NSD1Q96L73 2696 aaPredicted RBP3.55□□□□□ -1.84
LIMCH1-201ENST00000313860 CSMD3Q7Z407 3707 aa3.54□□□□□ -1.84
LIMCH1-201ENST00000313860 STAB1Q9NY15 2570 aa3.53□□□□□ -1.85
LIMCH1-201ENST00000313860 TRRAPQ9Y4A5 3859 aa3.52□□□□□ -1.85
LIMCH1-201ENST00000313860 KRTAP10-4P60372 401 aaPredicted RBP3.51□□□□□ -1.85
LIMCH1-201ENST00000313860 KRTAP10-12P60413 245 aa3.47□□□□□ -1.85
LIMCH1-201ENST00000313860 DNAH1Q9P2D7 4330 aa3.47□□□□□ -1.85
LIMCH1-201ENST00000313860 TGP01266 2768 aa3.45□□□□□ -1.86
LIMCH1-201ENST00000313860 KRTAP1-4P0C5Y4 121 aa3.44□□□□□ -1.86
LIMCH1-201ENST00000313860 DNAH10Q8IVF4 4471 aa3.41□□□□□ -1.86
LIMCH1-201ENST00000313860 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
LIMCH1-201ENST00000313860 LYSTQ99698 3801 aa3.39□□□□□ -1.87
LIMCH1-201ENST00000313860 ANK2Q01484 3957 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms