RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 PLAC4Q8WY50 150 aa4.74□□□□□ -1.65
VPS41-202ENST00000310301 A0A087X002 238 aa4.73□□□□□ -1.65
VPS41-202ENST00000310301 NOTCH2NLQ7Z3S9 236 aa4.73□□□□□ -1.65
VPS41-202ENST00000310301 CRYBG3Q68DQ2 2970 aa4.71□□□□□ -1.66
VPS41-202ENST00000310301 MXRA5Q9NR99 2828 aa4.7□□□□□ -1.66
VPS41-202ENST00000310301 C20orf166-AS1Q96NR2 134 aa4.7□□□□□ -1.66
VPS41-202ENST00000310301 LAMA1P25391 3075 aa4.68□□□□□ -1.66
VPS41-202ENST00000310301 DMBT1Q9UGM3 2413 aaPredicted RBP4.68□□□□□ -1.66
VPS41-202ENST00000310301 RPS29P62273 56 aaKnown RBP4.68□□□□□ -1.66
VPS41-202ENST00000310301 PDZD2O15018 2839 aa4.68□□□□□ -1.66
VPS41-202ENST00000310301 NBEAL2Q6ZNJ1 2754 aa4.67□□□□□ -1.66
VPS41-202ENST00000310301 VCANP13611 3396 aa4.67□□□□□ -1.66
VPS41-202ENST00000310301 CELSR2Q9HCU4 2923 aa4.67□□□□□ -1.66
VPS41-202ENST00000310301 BOD1L1Q8NFC6 3051 aa4.66□□□□□ -1.66
VPS41-202ENST00000310301 SPTBN5Q9NRC6 3674 aaKnown RBP4.65□□□□□ -1.66
VPS41-202ENST00000310301 A8MUU9 505 aa4.64□□□□□ -1.67
VPS41-202ENST00000310301 ZANQ9Y493 2812 aa4.64□□□□□ -1.67
VPS41-202ENST00000310301 FREM2Q5SZK8 3169 aa4.64□□□□□ -1.67
VPS41-202ENST00000310301 USP34Q70CQ2 3546 aa4.63□□□□□ -1.67
VPS41-202ENST00000310301 ADGRG4Q8IZF6 3080 aa4.63□□□□□ -1.67
VPS41-202ENST00000310301 NF1P21359 2839 aa4.61□□□□□ -1.67
VPS41-202ENST00000310301 A0A1B0GVY2 172 aa4.61□□□□□ -1.67
VPS41-202ENST00000310301 KRTAP11-1Q8IUC1 163 aa4.6□□□□□ -1.67
VPS41-202ENST00000310301 OTOGQ6ZRI0 2925 aa4.6□□□□□ -1.67
VPS41-202ENST00000310301 FLG2Q5D862 2391 aaPredicted RBP4.59□□□□□ -1.67
VPS41-202ENST00000310301 CFAP47Q6ZTR5 3102 aa4.59□□□□□ -1.68
VPS41-202ENST00000310301 HRNRQ86YZ3 2850 aaPredicted RBP4.59□□□□□ -1.68
VPS41-202ENST00000310301 FBN2P35556 2912 aa4.57□□□□□ -1.68
VPS41-202ENST00000310301 C10orf95Q9H7T3 257 aa4.57□□□□□ -1.68
VPS41-202ENST00000310301 DCHS2Q6V1P9 2916 aa4.56□□□□□ -1.68
VPS41-202ENST00000310301 TENM2Q9NT68 2774 aa4.55□□□□□ -1.68
VPS41-202ENST00000310301 KRTAP7-1Q8IUC3 87 aa4.54□□□□□ -1.68
VPS41-202ENST00000310301 FBN3Q75N90 2809 aa4.52□□□□□ -1.69
VPS41-202ENST00000310301 CELSR3Q9NYQ7 3312 aa4.51□□□□□ -1.69
VPS41-202ENST00000310301 TENM3Q9P273 2699 aa4.51□□□□□ -1.69
VPS41-202ENST00000310301 TNP1P09430 55 aa4.48□□□□□ -1.69
VPS41-202ENST00000310301 TENM1Q9UKZ4 2725 aa4.48□□□□□ -1.69
VPS41-202ENST00000310301 KRTAP13-1Q8IUC0 172 aa4.48□□□□□ -1.69
VPS41-202ENST00000310301 KRTAP13-2Q52LG2 175 aa4.48□□□□□ -1.69
VPS41-202ENST00000310301 TPRXLQ17RH7 258 aa4.45□□□□□ -1.7
VPS41-202ENST00000310301 H0YAA0 97 aa4.42□□□□□ -1.7
VPS41-202ENST00000310301 DCHS1Q96JQ0 3298 aa4.41□□□□□ -1.7
VPS41-202ENST00000310301 P0C880 135 aa4.41□□□□□ -1.7
VPS41-202ENST00000310301 PP632Q6XCG6 107 aa4.4□□□□□ -1.7
VPS41-202ENST00000310301 LOC400499M0QZD8 3231 aa4.4□□□□□ -1.71
VPS41-202ENST00000310301 KRTAP1-4P0C5Y4 121 aa4.39□□□□□ -1.71
VPS41-202ENST00000310301 KRTAP10-8P60410 259 aa4.38□□□□□ -1.71
VPS41-202ENST00000310301 PKD1L1Q8TDX9 2849 aa4.35□□□□□ -1.71
VPS41-202ENST00000310301 FBN1P35555 2871 aaKnown RBP4.35□□□□□ -1.71
VPS41-202ENST00000310301 MYO15AQ9UKN7 3530 aa4.33□□□□□ -1.72
VPS41-202ENST00000310301 DNAH14Q0VDD8 3507 aa4.32□□□□□ -1.72
VPS41-202ENST00000310301 VWFP04275 2813 aa4.32□□□□□ -1.72
VPS41-202ENST00000310301 SPEGQ15772 3267 aa4.32□□□□□ -1.72
VPS41-202ENST00000310301 XP32Q5T750 250 aa4.31□□□□□ -1.72
VPS41-202ENST00000310301 TGP01266 2768 aa4.31□□□□□ -1.72
VPS41-202ENST00000310301 CELSR1Q9NYQ6 3014 aa4.29□□□□□ -1.72
VPS41-202ENST00000310301 NBPF19A0A087WUL8 3843 aa4.29□□□□□ -1.72
VPS41-202ENST00000310301 MUC3AQ02505 3323 aa4.28□□□□□ -1.73
VPS41-202ENST00000310301 KRTAP13-3Q3SY46 172 aa4.27□□□□□ -1.73
VPS41-202ENST00000310301 ZFHX3Q15911 3703 aa4.26□□□□□ -1.73
VPS41-202ENST00000310301 RELNP78509 3460 aa4.24□□□□□ -1.73
VPS41-202ENST00000310301 ANK3Q12955 4377 aaKnown RBP4.24□□□□□ -1.73
VPS41-202ENST00000310301 KRTAP10-10P60014 251 aa4.14□□□□□ -1.75
VPS41-202ENST00000310301 LAMA5O15230 3695 aa4.13□□□□□ -1.75
VPS41-202ENST00000310301 KRTAP12-2P59991 146 aa4.13□□□□□ -1.75
VPS41-202ENST00000310301 MT1HL1P0DM35 61 aa4.11□□□□□ -1.75
VPS41-202ENST00000310301 KRTAP4-5Q9BYR2 181 aa4.09□□□□□ -1.75
VPS41-202ENST00000310301 SMG1Q96Q15 3661 aaKnown RBP4.09□□□□□ -1.76
VPS41-202ENST00000310301 DMDP11532 3685 aa4.07□□□□□ -1.76
VPS41-202ENST00000310301 PRO2289Q9P1D8 64 aa4.05□□□□□ -1.76
VPS41-202ENST00000310301 WDFY3Q8IZQ1 3526 aa4.03□□□□□ -1.76
VPS41-202ENST00000310301 KRTAP13-4Q3LI77 160 aa4.03□□□□□ -1.76
VPS41-202ENST00000310301 KRTAP12-1P59990 96 aa4.02□□□□□ -1.77
VPS41-202ENST00000310301 ALMS1Q8TCU4 4167 aa4.02□□□□□ -1.77
VPS41-202ENST00000310301 MEGF8Q7Z7M0 2845 aa4.01□□□□□ -1.77
VPS41-202ENST00000310301 KRTAP10-4P60372 401 aaPredicted RBP4.01□□□□□ -1.77
VPS41-202ENST00000310301 ASPMQ8IZT6 3477 aa4□□□□□ -1.77
VPS41-202ENST00000310301 CSMD1Q96PZ7 3565 aa3.98□□□□□ -1.77
VPS41-202ENST00000310301 SRRM2Q9UQ35 2752 aaKnown RBP3.97□□□□□ -1.77
VPS41-202ENST00000310301 ZFHX4Q86UP3 3567 aa3.97□□□□□ -1.77
VPS41-202ENST00000310301 DNHD1Q96M86 4753 aa3.95□□□□□ -1.78
VPS41-202ENST00000310301 COL7A1Q02388 2944 aa3.95□□□□□ -1.78
VPS41-202ENST00000310301 CSMD2Q7Z408 3487 aa3.93□□□□□ -1.78
VPS41-202ENST00000310301 KRTAP15-1Q3LI76 137 aa3.91□□□□□ -1.78
VPS41-202ENST00000310301 TRRAPQ9Y4A5 3859 aa3.91□□□□□ -1.78
VPS41-202ENST00000310301 KRTAP3-1Q9BYR8 98 aa3.91□□□□□ -1.78
VPS41-202ENST00000310301 BSNQ9UPA5 3926 aa3.89□□□□□ -1.79
VPS41-202ENST00000310301 HUWE1Q7Z6Z7 4374 aaKnown RBP3.88□□□□□ -1.79
VPS41-202ENST00000310301 INE1O15225 51 aa3.88□□□□□ -1.79
VPS41-202ENST00000310301 AKAP9Q99996 3911 aa3.84□□□□□ -1.79
VPS41-202ENST00000310301 DNAH9Q9NYC9 4486 aa3.84□□□□□ -1.8
VPS41-202ENST00000310301 SPENQ96T58 3664 aaKnown RBP3.84□□□□□ -1.8
VPS41-202ENST00000310301 KRTAP10-6P60371 365 aaPredicted RBP3.83□□□□□ -1.8
VPS41-202ENST00000310301 DNAH11Q96DT5 4516 aa3.82□□□□□ -1.8
VPS41-202ENST00000310301 DNAH1Q9P2D7 4330 aa3.79□□□□□ -1.8
VPS41-202ENST00000310301 DNAH10Q8IVF4 4471 aa3.72□□□□□ -1.81
VPS41-202ENST00000310301 CUBNO60494 3623 aa3.72□□□□□ -1.81
VPS41-202ENST00000310301 PLECQ15149 4684 aaKnown RBP3.7□□□□□ -1.82
VPS41-202ENST00000310301 BIRC6Q9NR09 4857 aa3.7□□□□□ -1.82
VPS41-202ENST00000310301 DNAH5Q8TE73 4624 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms