RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 KRTAP7-1Q8IUC3 87 aa7.13□□□□□ -1.27
USP38-201ENST00000307017 DMBT1Q9UGM3 2413 aaPredicted RBP7.13□□□□□ -1.27
USP38-201ENST00000307017 MAST4O15021 2626 aa7.1□□□□□ -1.27
USP38-201ENST00000307017 ZZEF1O43149 2961 aa7.09□□□□□ -1.27
USP38-201ENST00000307017 LCE6AA0A183 80 aa7.08□□□□□ -1.28
USP38-201ENST00000307017 KRTAP10-8P60410 259 aa7.07□□□□□ -1.28
USP38-201ENST00000307017 FLNBO75369 2602 aaKnown RBP7.05□□□□□ -1.28
USP38-201ENST00000307017 KRTAP13-2Q52LG2 175 aa7.04□□□□□ -1.28
USP38-201ENST00000307017 DMDP11532 3685 aa7.04□□□□□ -1.28
USP38-201ENST00000307017 TNRC18O15417 2968 aaPredicted RBP7.03□□□□□ -1.28
USP38-201ENST00000307017 COL6A5A8TX70 2615 aa7.03□□□□□ -1.28
USP38-201ENST00000307017 TACC2O95359 2948 aa7□□□□□ -1.29
USP38-201ENST00000307017 UNC79Q9P2D8 2635 aa7□□□□□ -1.29
USP38-201ENST00000307017 DMXL1Q9Y485 3027 aa6.99□□□□□ -1.29
USP38-201ENST00000307017 APCP25054 2843 aa6.99□□□□□ -1.29
USP38-201ENST00000307017 SMG1Q96Q15 3661 aaKnown RBP6.98□□□□□ -1.29
USP38-201ENST00000307017 SPENQ96T58 3664 aaKnown RBP6.97□□□□□ -1.29
USP38-201ENST00000307017 TNP1P09430 55 aa6.96□□□□□ -1.3
USP38-201ENST00000307017 CUBNO60494 3623 aa6.96□□□□□ -1.3
USP38-201ENST00000307017 HELZ2Q9BYK8 2649 aaKnown RBP6.95□□□□□ -1.3
USP38-201ENST00000307017 SVEP1Q4LDE5 3571 aa6.95□□□□□ -1.3
USP38-201ENST00000307017 TEP1Q99973 2627 aaKnown RBP6.94□□□□□ -1.3
USP38-201ENST00000307017 NBPF19A0A087WUL8 3843 aa6.93□□□□□ -1.3
USP38-201ENST00000307017 HIVEP1P15822 2718 aa6.88□□□□□ -1.31
USP38-201ENST00000307017 Q6ZRN7 208 aaPredicted RBP6.87□□□□□ -1.31
USP38-201ENST00000307017 ASB16-AS1Q495Z4 193 aa6.86□□□□□ -1.31
USP38-201ENST00000307017 NOTCH1P46531 2555 aa6.85□□□□□ -1.31
USP38-201ENST00000307017 STAB2Q8WWQ8 2551 aa6.85□□□□□ -1.31
USP38-201ENST00000307017 BAHCC1Q9P281 2608 aa6.83□□□□□ -1.32
USP38-201ENST00000307017 STAB1Q9NY15 2570 aa6.82□□□□□ -1.32
USP38-201ENST00000307017 H0YAA0 97 aa6.82□□□□□ -1.32
USP38-201ENST00000307017 ITPR1Q14643 2758 aa6.81□□□□□ -1.32
USP38-201ENST00000307017 UTP20O75691 2785 aaKnown RBP6.8□□□□□ -1.32
USP38-201ENST00000307017 NSD1Q96L73 2696 aaPredicted RBP6.8□□□□□ -1.32
USP38-201ENST00000307017 UBR5O95071 2799 aaPredicted RBP6.79□□□□□ -1.32
USP38-201ENST00000307017 SETXQ7Z333 2677 aaKnown RBP6.78□□□□□ -1.32
USP38-201ENST00000307017 KRTAP13-1Q8IUC0 172 aa6.77□□□□□ -1.33
USP38-201ENST00000307017 KRTAP10-10P60014 251 aa6.77□□□□□ -1.33
USP38-201ENST00000307017 ZNF292O60281 2723 aa6.74□□□□□ -1.33
USP38-201ENST00000307017 ITPR2Q14571 2701 aa6.74□□□□□ -1.33
USP38-201ENST00000307017 CELSR2Q9HCU4 2923 aa6.65□□□□□ -1.34
USP38-201ENST00000307017 CELSR1Q9NYQ6 3014 aa6.65□□□□□ -1.34
USP38-201ENST00000307017 XP32Q5T750 250 aa6.63□□□□□ -1.35
USP38-201ENST00000307017 KMT2BQ9UMN6 2715 aaPredicted RBP6.63□□□□□ -1.35
USP38-201ENST00000307017 ZFHX3Q15911 3703 aa6.62□□□□□ -1.35
USP38-201ENST00000307017 RPS29P62273 56 aaKnown RBP6.59□□□□□ -1.35
USP38-201ENST00000307017 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
USP38-201ENST00000307017 CRCT1Q9UGL9 99 aa6.58□□□□□ -1.36
USP38-201ENST00000307017 IGSF10Q6WRI0 2623 aa6.52□□□□□ -1.37
USP38-201ENST00000307017 KRTAP1-4P0C5Y4 121 aa6.52□□□□□ -1.37
USP38-201ENST00000307017 KRTAP12-2P59991 146 aa6.51□□□□□ -1.37
USP38-201ENST00000307017 FBN2P35556 2912 aa6.5□□□□□ -1.37
USP38-201ENST00000307017 MUC3AQ02505 3323 aa6.5□□□□□ -1.37
USP38-201ENST00000307017 DCHS2Q6V1P9 2916 aa6.49□□□□□ -1.37
USP38-201ENST00000307017 CSMD2Q7Z408 3487 aa6.48□□□□□ -1.37
USP38-201ENST00000307017 PP632Q6XCG6 107 aa6.44□□□□□ -1.38
USP38-201ENST00000307017 VPS13CQ709C8 3753 aa6.39□□□□□ -1.39
USP38-201ENST00000307017 HRNRQ86YZ3 2850 aaPredicted RBP6.39□□□□□ -1.39
USP38-201ENST00000307017 CSMD3Q7Z407 3707 aa6.36□□□□□ -1.39
USP38-201ENST00000307017 NF1P21359 2839 aa6.34□□□□□ -1.39
USP38-201ENST00000307017 TGP01266 2768 aa6.31□□□□□ -1.4
USP38-201ENST00000307017 ZANQ9Y493 2812 aa6.31□□□□□ -1.4
USP38-201ENST00000307017 TPRXLQ17RH7 258 aa6.31□□□□□ -1.4
USP38-201ENST00000307017 KRTAP13-3Q3SY46 172 aa6.25□□□□□ -1.41
USP38-201ENST00000307017 BSNQ9UPA5 3926 aa6.24□□□□□ -1.41
USP38-201ENST00000307017 MXRA5Q9NR99 2828 aa6.22□□□□□ -1.41
USP38-201ENST00000307017 NIPBLQ6KC79 2804 aaeCLIP6.21□□□□□ -1.41
USP38-201ENST00000307017 TENM1Q9UKZ4 2725 aa6.21□□□□□ -1.42
USP38-201ENST00000307017 FLNCQ14315 2725 aa6.2□□□□□ -1.42
USP38-201ENST00000307017 TENM2Q9NT68 2774 aa6.17□□□□□ -1.42
USP38-201ENST00000307017 KRTAP12-1P59990 96 aa6.16□□□□□ -1.42
USP38-201ENST00000307017 VWFP04275 2813 aa6.16□□□□□ -1.42
USP38-201ENST00000307017 KRTAP15-1Q3LI76 137 aa6.12□□□□□ -1.43
USP38-201ENST00000307017 KRTAP13-4Q3LI77 160 aa6.12□□□□□ -1.43
USP38-201ENST00000307017 TRRAPQ9Y4A5 3859 aa6.1□□□□□ -1.43
USP38-201ENST00000307017 TENM4Q6N022 2769 aa6.08□□□□□ -1.44
USP38-201ENST00000307017 PKD1L1Q8TDX9 2849 aa6.08□□□□□ -1.44
USP38-201ENST00000307017 KRTAP3-1Q9BYR8 98 aa6.06□□□□□ -1.44
USP38-201ENST00000307017 PDZD2O15018 2839 aa6.05□□□□□ -1.44
USP38-201ENST00000307017 AKAP9Q99996 3911 aa6□□□□□ -1.45
USP38-201ENST00000307017 ANK3Q12955 4377 aaKnown RBP6□□□□□ -1.45
USP38-201ENST00000307017 KRTAP10-6P60371 365 aaPredicted RBP5.98□□□□□ -1.45
USP38-201ENST00000307017 KRTAP21-3Q3LHN1 58 aa5.92□□□□□ -1.46
USP38-201ENST00000307017 TENM3Q9P273 2699 aa5.9□□□□□ -1.47
USP38-201ENST00000307017 SRRM2Q9UQ35 2752 aaKnown RBP5.89□□□□□ -1.47
USP38-201ENST00000307017 HUWE1Q7Z6Z7 4374 aaKnown RBP5.84□□□□□ -1.47
USP38-201ENST00000307017 FBN1P35555 2871 aaKnown RBP5.77□□□□□ -1.49
USP38-201ENST00000307017 ZNF469Q96JG9 3925 aaPredicted RBP5.77□□□□□ -1.49
USP38-201ENST00000307017 MEGF8Q7Z7M0 2845 aa5.77□□□□□ -1.49
USP38-201ENST00000307017 LORP23490 312 aaPredicted RBP5.75□□□□□ -1.49
USP38-201ENST00000307017 FBN3Q75N90 2809 aa5.73□□□□□ -1.49
USP38-201ENST00000307017 OTOGQ6ZRI0 2925 aa5.73□□□□□ -1.49
USP38-201ENST00000307017 KRTAP10-5P60370 271 aa5.7□□□□□ -1.5
USP38-201ENST00000307017 COL7A1Q02388 2944 aa5.68□□□□□ -1.5
USP38-201ENST00000307017 KRTAP10-7P60409 375 aaPredicted RBP5.68□□□□□ -1.5
USP38-201ENST00000307017 KRTAP10-12P60413 245 aa5.65□□□□□ -1.51
USP38-201ENST00000307017 FRAS1Q86XX4 4008 aa5.64□□□□□ -1.51
USP38-201ENST00000307017 KRTAP4-5Q9BYR2 181 aa5.63□□□□□ -1.51
USP38-201ENST00000307017 LCE3AQ5TA76 89 aa5.63□□□□□ -1.51
USP38-201ENST00000307017 KRTAP3-3Q9BYR6 98 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms