RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 DMXL2Q8TDJ6 3036 aa7.4□□□□□ -1.23
TRIM56-201ENST00000306085 VPS13AQ96RL7 3174 aa7.37□□□□□ -1.23
TRIM56-201ENST00000306085 WDFY4Q6ZS81 3184 aa7.36□□□□□ -1.23
TRIM56-201ENST00000306085 XIRP2A4UGR9 3374 aa7.36□□□□□ -1.23
TRIM56-201ENST00000306085 REV3LO60673 3130 aa7.35□□□□□ -1.23
TRIM56-201ENST00000306085 RANBP2P49792 3224 aaKnown RBP7.34□□□□□ -1.23
TRIM56-201ENST00000306085 A0A1B0GVY2 172 aa7.31□□□□□ -1.24
TRIM56-201ENST00000306085 Q6ZRN7 208 aaPredicted RBP7.3□□□□□ -1.24
TRIM56-201ENST00000306085 KRTAP13-2Q52LG2 175 aa7.29□□□□□ -1.24
TRIM56-201ENST00000306085 NBEAQ8NFP9 2946 aa7.27□□□□□ -1.25
TRIM56-201ENST00000306085 TACC2O95359 2948 aa7.27□□□□□ -1.25
TRIM56-201ENST00000306085 H0YAA0 97 aa7.24□□□□□ -1.25
TRIM56-201ENST00000306085 ZANQ9Y493 2812 aa7.24□□□□□ -1.25
TRIM56-201ENST00000306085 CELSR3Q9NYQ7 3312 aa7.24□□□□□ -1.25
TRIM56-201ENST00000306085 PRO2289Q9P1D8 64 aa7.22□□□□□ -1.25
TRIM56-201ENST00000306085 TNRC18O15417 2968 aaPredicted RBP7.2□□□□□ -1.26
TRIM56-201ENST00000306085 VWFP04275 2813 aa7.19□□□□□ -1.26
TRIM56-201ENST00000306085 LAMA1P25391 3075 aa7.19□□□□□ -1.26
TRIM56-201ENST00000306085 ZZEF1O43149 2961 aa7.16□□□□□ -1.26
TRIM56-201ENST00000306085 HTTP42858 3142 aa7.14□□□□□ -1.27
TRIM56-201ENST00000306085 DCHS2Q6V1P9 2916 aa7.14□□□□□ -1.27
TRIM56-201ENST00000306085 KRTAP10-10P60014 251 aa7.14□□□□□ -1.27
TRIM56-201ENST00000306085 UNC80Q8N2C7 3258 aa7.12□□□□□ -1.27
TRIM56-201ENST00000306085 MKI67P46013 3256 aaKnown RBP7.1□□□□□ -1.27
TRIM56-201ENST00000306085 KRTAP7-1Q8IUC3 87 aa7.09□□□□□ -1.27
TRIM56-201ENST00000306085 KRTAP13-1Q8IUC0 172 aa7.08□□□□□ -1.28
TRIM56-201ENST00000306085 PKD1L1Q8TDX9 2849 aa7.06□□□□□ -1.28
TRIM56-201ENST00000306085 TENM4Q6N022 2769 aa7.03□□□□□ -1.28
TRIM56-201ENST00000306085 ATMQ13315 3056 aa7.03□□□□□ -1.28
TRIM56-201ENST00000306085 CELSR1Q9NYQ6 3014 aa7.02□□□□□ -1.29
TRIM56-201ENST00000306085 XP32Q5T750 250 aa7.02□□□□□ -1.29
TRIM56-201ENST00000306085 COL6A3P12111 3177 aa7.01□□□□□ -1.29
TRIM56-201ENST00000306085 TENM2Q9NT68 2774 aa7□□□□□ -1.29
TRIM56-201ENST00000306085 FBN2P35556 2912 aa6.99□□□□□ -1.29
TRIM56-201ENST00000306085 DNAH14Q0VDD8 3507 aa6.98□□□□□ -1.29
TRIM56-201ENST00000306085 BOD1L1Q8NFC6 3051 aa6.97□□□□□ -1.29
TRIM56-201ENST00000306085 CFAP47Q6ZTR5 3102 aa6.95□□□□□ -1.3
TRIM56-201ENST00000306085 KRTAP12-2P59991 146 aa6.93□□□□□ -1.3
TRIM56-201ENST00000306085 LAMA3Q16787 3333 aa6.93□□□□□ -1.3
TRIM56-201ENST00000306085 ADGRG4Q8IZF6 3080 aa6.92□□□□□ -1.3
TRIM56-201ENST00000306085 DMXL1Q9Y485 3027 aa6.89□□□□□ -1.31
TRIM56-201ENST00000306085 MXRA5Q9NR99 2828 aa6.89□□□□□ -1.31
TRIM56-201ENST00000306085 VCANP13611 3396 aa6.87□□□□□ -1.31
TRIM56-201ENST00000306085 TPRXLQ17RH7 258 aa6.8□□□□□ -1.32
TRIM56-201ENST00000306085 SPEGQ15772 3267 aa6.8□□□□□ -1.32
TRIM56-201ENST00000306085 COL7A1Q02388 2944 aa6.79□□□□□ -1.32
TRIM56-201ENST00000306085 USP34Q70CQ2 3546 aa6.79□□□□□ -1.32
TRIM56-201ENST00000306085 BRCA2P51587 3418 aa6.77□□□□□ -1.32
TRIM56-201ENST00000306085 KRTAP15-1Q3LI76 137 aa6.74□□□□□ -1.33
TRIM56-201ENST00000306085 KRTAP13-4Q3LI77 160 aa6.73□□□□□ -1.33
TRIM56-201ENST00000306085 KRTAP1-4P0C5Y4 121 aa6.71□□□□□ -1.34
TRIM56-201ENST00000306085 ZFHX4Q86UP3 3567 aa6.68□□□□□ -1.34
TRIM56-201ENST00000306085 HRNRQ86YZ3 2850 aaPredicted RBP6.65□□□□□ -1.35
TRIM56-201ENST00000306085 SZT2Q5T011 3432 aa6.63□□□□□ -1.35
TRIM56-201ENST00000306085 KRTAP13-3Q3SY46 172 aa6.63□□□□□ -1.35
TRIM56-201ENST00000306085 MEGF8Q7Z7M0 2845 aa6.59□□□□□ -1.35
TRIM56-201ENST00000306085 INE1O15225 51 aa6.57□□□□□ -1.36
TRIM56-201ENST00000306085 KRTAP12-1P59990 96 aa6.55□□□□□ -1.36
TRIM56-201ENST00000306085 CDH23Q9H251 3354 aa6.55□□□□□ -1.36
TRIM56-201ENST00000306085 CRCT1Q9UGL9 99 aa6.52□□□□□ -1.37
TRIM56-201ENST00000306085 OTOGQ6ZRI0 2925 aa6.5□□□□□ -1.37
TRIM56-201ENST00000306085 SPTBN5Q9NRC6 3674 aaKnown RBP6.49□□□□□ -1.37
TRIM56-201ENST00000306085 FBN3Q75N90 2809 aa6.49□□□□□ -1.37
TRIM56-201ENST00000306085 MYO15AQ9UKN7 3530 aa6.42□□□□□ -1.38
TRIM56-201ENST00000306085 ZFHX3Q15911 3703 aa6.42□□□□□ -1.38
TRIM56-201ENST00000306085 NBPF19A0A087WUL8 3843 aa6.4□□□□□ -1.38
TRIM56-201ENST00000306085 WDFY3Q8IZQ1 3526 aa6.39□□□□□ -1.39
TRIM56-201ENST00000306085 EYSQ5T1H1 3165 aa6.35□□□□□ -1.39
TRIM56-201ENST00000306085 LOC400499M0QZD8 3231 aa6.34□□□□□ -1.39
TRIM56-201ENST00000306085 ASPMQ8IZT6 3477 aa6.34□□□□□ -1.4
TRIM56-201ENST00000306085 KRTAP21-3Q3LHN1 58 aa6.25□□□□□ -1.41
TRIM56-201ENST00000306085 FBN1P35555 2871 aaKnown RBP6.25□□□□□ -1.41
TRIM56-201ENST00000306085 LAMA5O15230 3695 aa6.22□□□□□ -1.41
TRIM56-201ENST00000306085 SMG1Q96Q15 3661 aaKnown RBP6.22□□□□□ -1.41
TRIM56-201ENST00000306085 KRTAP10-12P60413 245 aa6.2□□□□□ -1.42
TRIM56-201ENST00000306085 DMDP11532 3685 aa6.12□□□□□ -1.43
TRIM56-201ENST00000306085 SPENQ96T58 3664 aaKnown RBP6.1□□□□□ -1.43
TRIM56-201ENST00000306085 KRTAP3-1Q9BYR8 98 aa6.1□□□□□ -1.43
TRIM56-201ENST00000306085 RELNP78509 3460 aa6.07□□□□□ -1.44
TRIM56-201ENST00000306085 CSMD1Q96PZ7 3565 aa6.06□□□□□ -1.44
TRIM56-201ENST00000306085 KRTAP10-6P60371 365 aaPredicted RBP6.05□□□□□ -1.44
TRIM56-201ENST00000306085 KRTAP10-5P60370 271 aa6.04□□□□□ -1.44
TRIM56-201ENST00000306085 DCHS1Q96JQ0 3298 aa6.03□□□□□ -1.44
TRIM56-201ENST00000306085 KRTAP12-3P60328 96 aa5.99□□□□□ -1.45
TRIM56-201ENST00000306085 KRTAP23-1A1A580 65 aa5.93□□□□□ -1.46
TRIM56-201ENST00000306085 LCE3AQ5TA76 89 aa5.84□□□□□ -1.47
TRIM56-201ENST00000306085 CUBNO60494 3623 aa5.82□□□□□ -1.48
TRIM56-201ENST00000306085 VPS13CQ709C8 3753 aa5.77□□□□□ -1.49
TRIM56-201ENST00000306085 TRRAPQ9Y4A5 3859 aa5.76□□□□□ -1.49
TRIM56-201ENST00000306085 CSMD3Q7Z407 3707 aa5.76□□□□□ -1.49
TRIM56-201ENST00000306085 KRTAP3-2Q9BYR7 98 aa5.72□□□□□ -1.49
TRIM56-201ENST00000306085 KRTAP3-3Q9BYR6 98 aa5.68□□□□□ -1.5
TRIM56-201ENST00000306085 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
TRIM56-201ENST00000306085 SVEP1Q4LDE5 3571 aa5.61□□□□□ -1.51
TRIM56-201ENST00000306085 ALMS1Q8TCU4 4167 aa5.61□□□□□ -1.51
TRIM56-201ENST00000306085 MUC3AQ02505 3323 aa5.58□□□□□ -1.52
TRIM56-201ENST00000306085 LORP23490 312 aaPredicted RBP5.55□□□□□ -1.52
TRIM56-201ENST00000306085 CSMD2Q7Z408 3487 aa5.52□□□□□ -1.53
TRIM56-201ENST00000306085 AKAP9Q99996 3911 aa5.47□□□□□ -1.53
TRIM56-201ENST00000306085 MT1HL1P0DM35 61 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms