RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 A0A087X002 238 aa14.02□□□□□ -0.16
TRIM54-201ENST00000296098 FAM229BQ4G0N7 80 aa14□□□□□ -0.17
TRIM54-201ENST00000296098 CYP4F30PQ9H0H9 118 aa14□□□□□ -0.17
TRIM54-201ENST00000296098 MRPL34Q9BQ48 92 aaKnown RBP14□□□□□ -0.17
TRIM54-201ENST00000296098 KRTAP13-2Q52LG2 175 aa13.99□□□□□ -0.17
TRIM54-201ENST00000296098 NDUFS5O43920 106 aa13.98□□□□□ -0.17
TRIM54-201ENST00000296098 NOTCH2NLQ7Z3S9 236 aa13.98□□□□□ -0.17
TRIM54-201ENST00000296098 PRR4Q16378 134 aa13.97□□□□□ -0.17
TRIM54-201ENST00000296098 LRP1BQ9NZR2 4599 aa13.95□□□□□ -0.18
TRIM54-201ENST00000296098 SPANXA2-OT1Q8N9U9 137 aa13.94□□□□□ -0.18
TRIM54-201ENST00000296098 KRTAP1-4P0C5Y4 121 aa13.91□□□□□ -0.18
TRIM54-201ENST00000296098 C8orf87E5RJ46 101 aa13.86□□□□□ -0.19
TRIM54-201ENST00000296098 LINC00336Q6ZUF6 198 aa13.82□□□□□ -0.2
TRIM54-201ENST00000296098 MPLKIPQ8TAP9 179 aa13.82□□□□□ -0.2
TRIM54-201ENST00000296098 C1orf195Q5TG92 126 aa13.81□□□□□ -0.2
TRIM54-201ENST00000296098 LIMD2Q9BT23 127 aa13.8□□□□□ -0.2
TRIM54-201ENST00000296098 SACSQ9NZJ4 4579 aa13.79□□□□□ -0.2
TRIM54-201ENST00000296098 PCOTHQ58A44 107 aa13.78□□□□□ -0.2
TRIM54-201ENST00000296098 PLA2G1BP04054 148 aaKnown RBP13.78□□□□□ -0.2
TRIM54-201ENST00000296098 VPS13BQ7Z7G8 4022 aa13.76□□□□□ -0.21
TRIM54-201ENST00000296098 IGLV7-46A0A075B6I9 117 aa13.76□□□□□ -0.21
TRIM54-201ENST00000296098 LINC00313P59037 77 aa13.74□□□□□ -0.21
TRIM54-201ENST00000296098 TYMSOSQ8TAI1 123 aa13.73□□□□□ -0.21
TRIM54-201ENST00000296098 KRTAP13-3Q3SY46 172 aa13.71□□□□□ -0.22
TRIM54-201ENST00000296098 Q5W150 140 aa13.71□□□□□ -0.22
TRIM54-201ENST00000296098 LOC101927531A0A1B0GV80 90 aa13.7□□□□□ -0.22
TRIM54-201ENST00000296098 C4orf48Q5BLP8 95 aa13.7□□□□□ -0.22
TRIM54-201ENST00000296098 PKHD1P08F94 4074 aa13.69□□□□□ -0.22
TRIM54-201ENST00000296098 A0A1B0GVY2 172 aa13.68□□□□□ -0.22
TRIM54-201ENST00000296098 Q1T7F1 81 aa13.68□□□□□ -0.22
TRIM54-201ENST00000296098 SPINK1P00995 79 aa13.64□□□□□ -0.23
TRIM54-201ENST00000296098 Q8N9P0 234 aaPredicted RBP13.64□□□□□ -0.23
TRIM54-201ENST00000296098 SMR3BP02814 79 aaPredicted RBP13.61□□□□□ -0.23
TRIM54-201ENST00000296098 COA5Q86WW8 74 aa13.61□□□□□ -0.23
TRIM54-201ENST00000296098 KRTAP16-1A8MUX0 517 aa13.59□□□□□ -0.23
TRIM54-201ENST00000296098 FAM229AH3BQW9 127 aa13.59□□□□□ -0.23
TRIM54-201ENST00000296098 PRR26Q8N8Z3 221 aa13.59□□□□□ -0.23
TRIM54-201ENST00000296098 DYNC1H1Q14204 4646 aaKnown RBP13.57□□□□□ -0.24
TRIM54-201ENST00000296098 LINC00304Q8N9R0 145 aa13.56□□□□□ -0.24
TRIM54-201ENST00000296098 V9GYY9 64 aa13.54□□□□□ -0.24
TRIM54-201ENST00000296098 RPS29P62273 56 aaKnown RBP13.52□□□□□ -0.24
TRIM54-201ENST00000296098 SPAG11AQ6PDA7 123 aa13.5□□□□□ -0.25
TRIM54-201ENST00000296098 RETNLBQ9BQ08 111 aa13.49□□□□□ -0.25
TRIM54-201ENST00000296098 KRTAP10-4P60372 401 aaPredicted RBP13.48□□□□□ -0.25
TRIM54-201ENST00000296098 PSPHP1O15172 72 aa13.46□□□□□ -0.25
TRIM54-201ENST00000296098 HRES1P13985 223 aa13.44□□□□□ -0.26
TRIM54-201ENST00000296098 PRO0628Q9UI54 55 aa13.44□□□□□ -0.26
TRIM54-201ENST00000296098 IGKV2-30P06310 120 aa13.43□□□□□ -0.26
TRIM54-201ENST00000296098 BRK1Q8WUW1 75 aa13.43□□□□□ -0.26
TRIM54-201ENST00000296098 APOBP04114 4563 aaKnown RBP13.43□□□□□ -0.26
TRIM54-201ENST00000296098 RYR2Q92736 4967 aa13.42□□□□□ -0.26
TRIM54-201ENST00000296098 A8MUN3 132 aa13.39□□□□□ -0.27
TRIM54-201ENST00000296098 Q5VV11 94 aa13.32□□□□□ -0.28
TRIM54-201ENST00000296098 DMAC1Q96GE9 116 aa13.31□□□□□ -0.28
TRIM54-201ENST00000296098 PRR15LQ9BU68 103 aa13.31□□□□□ -0.28
TRIM54-201ENST00000296098 FAT1Q14517 4588 aa13.31□□□□□ -0.28
TRIM54-201ENST00000296098 ACYP2P14621 99 aa13.3□□□□□ -0.28
TRIM54-201ENST00000296098 IGKV2D-30A0A075B6S6 120 aa13.28□□□□□ -0.28
TRIM54-201ENST00000296098 PKHD1L1Q86WI1 4243 aa13.25□□□□□ -0.29
TRIM54-201ENST00000296098 KMT2CQ8NEZ4 4911 aaKnown RBP13.23□□□□□ -0.29
TRIM54-201ENST00000296098 LINC01558Q9Y6Z2 57 aa13.22□□□□□ -0.29
TRIM54-201ENST00000296098 CHKB-CPT1BH3BT56 60 aa13.18□□□□□ -0.3
TRIM54-201ENST00000296098 Q75L30 129 aa13.18□□□□□ -0.3
TRIM54-201ENST00000296098 C9orf92A6NGG3 77 aa13.15□□□□□ -0.3
TRIM54-201ENST00000296098 C7orf65Q6ZTY9 151 aa13.13□□□□□ -0.31
TRIM54-201ENST00000296098 C20orf166-AS1Q96NR2 134 aa13.11□□□□□ -0.31
TRIM54-201ENST00000296098 A8MUU9 505 aa13.1□□□□□ -0.31
TRIM54-201ENST00000296098 Q5VSD8 79 aa13.05□□□□□ -0.32
TRIM54-201ENST00000296098 A6NED7 52 aa13.02□□□□□ -0.33
TRIM54-201ENST00000296098 Q8N1X5 172 aa12.99□□□□□ -0.33
TRIM54-201ENST00000296098 FLG2Q5D862 2391 aaPredicted RBP12.97□□□□□ -0.33
TRIM54-201ENST00000296098 A8MU10 97 aa12.96□□□□□ -0.34
TRIM54-201ENST00000296098 KRTAP10-8P60410 259 aa12.95□□□□□ -0.34
TRIM54-201ENST00000296098 HSPG2P98160 4391 aa12.92□□□□□ -0.34
TRIM54-201ENST00000296098 LCA10Q71F78 164 aa12.9□□□□□ -0.34
TRIM54-201ENST00000296098 SPINK7P58062 85 aa12.88□□□□□ -0.35
TRIM54-201ENST00000296098 CDC42SE1Q9NRR8 79 aa12.86□□□□□ -0.35
TRIM54-201ENST00000296098 RYR3Q15413 4870 aa12.85□□□□□ -0.35
TRIM54-201ENST00000296098 TNXBP22105 4242 aa12.85□□□□□ -0.35
TRIM54-201ENST00000296098 A0A1B0GU69 56 aa12.83□□□□□ -0.36
TRIM54-201ENST00000296098 LRP1Q07954 4544 aaKnown RBP12.82□□□□□ -0.36
TRIM54-201ENST00000296098 FAT3Q8TDW7 4589 aa12.8□□□□□ -0.36
TRIM54-201ENST00000296098 RYR1P21817 5038 aa12.78□□□□□ -0.36
TRIM54-201ENST00000296098 KRTAP17-1Q9BYP8 105 aa12.76□□□□□ -0.37
TRIM54-201ENST00000296098 ATP11AUNQ6ZP68 121 aa12.74□□□□□ -0.37
TRIM54-201ENST00000296098 SPTSSBQ8NFR3 76 aa12.74□□□□□ -0.37
TRIM54-201ENST00000296098 KRTAP3-1Q9BYR8 98 aa12.68□□□□□ -0.38
TRIM54-201ENST00000296098 PMAIP1Q13794 54 aa12.67□□□□□ -0.38
TRIM54-201ENST00000296098 MT1HL1P0DM35 61 aa12.62□□□□□ -0.39
TRIM54-201ENST00000296098 RPL37P61927 97 aaKnown RBP12.62□□□□□ -0.39
TRIM54-201ENST00000296098 XP32Q5T750 250 aa12.59□□□□□ -0.39
TRIM54-201ENST00000296098 COX6B2Q6YFQ2 88 aa12.59□□□□□ -0.39
TRIM54-201ENST00000296098 KIAA1109Q2LD37 5005 aa12.58□□□□□ -0.4
TRIM54-201ENST00000296098 DMBT1Q9UGM3 2413 aaPredicted RBP12.55□□□□□ -0.4
TRIM54-201ENST00000296098 UQCR11O14957 56 aa12.55□□□□□ -0.4
TRIM54-201ENST00000296098 SEC61GP60059 68 aa12.54□□□□□ -0.4
TRIM54-201ENST00000296098 SPATA8Q6RVD6 105 aa12.52□□□□□ -0.41
TRIM54-201ENST00000296098 A6NN06 94 aa12.51□□□□□ -0.41
TRIM54-201ENST00000296098 MIR22HGQ0VDD5 57 aa12.49□□□□□ -0.41
TRIM54-201ENST00000296098 MYCBP2O75592 4640 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms