RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 IGKV4-1P06312 121 aa3.57□□□□□ -1.84
CD44-204ENST00000279452 DEFB116Q30KQ4 102 aa3.57□□□□□ -1.84
CD44-204ENST00000279452 OBSCN-AS1Q96MR7 158 aa3.57□□□□□ -1.84
CD44-204ENST00000279452 H3BT86 120 aa3.56□□□□□ -1.84
CD44-204ENST00000279452 C5orf47Q569G3 176 aa3.56□□□□□ -1.84
CD44-204ENST00000279452 Q96NJ1 140 aa3.56□□□□□ -1.84
CD44-204ENST00000279452 PCOTHQ58A44 107 aa3.55□□□□□ -1.84
CD44-204ENST00000279452 LOC110117498A0A087WWA1 95 aa3.54□□□□□ -1.84
CD44-204ENST00000279452 PDE6GP18545 87 aa3.54□□□□□ -1.84
CD44-204ENST00000279452 DSCR10P59022 87 aa3.54□□□□□ -1.84
CD44-204ENST00000279452 SEC61GP60059 68 aa3.54□□□□□ -1.84
CD44-204ENST00000279452 Q6ZQT0 140 aa3.54□□□□□ -1.84
CD44-204ENST00000279452 IGHV6-1A0A0B4J1U7 121 aa3.53□□□□□ -1.84
CD44-204ENST00000279452 K7EP34 96 aa3.53□□□□□ -1.84
CD44-204ENST00000279452 RPL37P61927 97 aaKnown RBP3.53□□□□□ -1.84
CD44-204ENST00000279452 ATP11AUNQ6ZP68 121 aa3.52□□□□□ -1.85
CD44-204ENST00000279452 GTF2H5Q6ZYL4 71 aa3.52□□□□□ -1.85
CD44-204ENST00000279452 J3KT08 172 aa3.51□□□□□ -1.85
CD44-204ENST00000279452 LINC00313P59037 77 aa3.51□□□□□ -1.85
CD44-204ENST00000279452 LINC00472Q9H8W2 130 aa3.51□□□□□ -1.85
CD44-204ENST00000279452 A0A1B0GW54 56 aa3.5□□□□□ -1.85
CD44-204ENST00000279452 NDUFB1O75438 58 aa3.5□□□□□ -1.85
CD44-204ENST00000279452 SCGB1A1P11684 91 aa3.5□□□□□ -1.85
CD44-204ENST00000279452 NREPQ16612 68 aa3.5□□□□□ -1.85
CD44-204ENST00000279452 LCE1DQ5T752 114 aa3.5□□□□□ -1.85
CD44-204ENST00000279452 A0A1B0GVX0 72 aa3.49□□□□□ -1.85
CD44-204ENST00000279452 Q75L30 129 aa3.49□□□□□ -1.85
CD44-204ENST00000279452 KRTAP4-1Q9BYQ7 146 aa3.49□□□□□ -1.85
CD44-204ENST00000279452 C8orf87E5RJ46 101 aa3.48□□□□□ -1.85
CD44-204ENST00000279452 KRTAP4-7Q9BYR0 210 aa3.48□□□□□ -1.85
CD44-204ENST00000279452 NOTCH2NLQ7Z3S9 236 aa3.47□□□□□ -1.85
CD44-204ENST00000279452 C20orf166-AS1Q96NR2 134 aa3.47□□□□□ -1.85
CD44-204ENST00000279452 PRO0461Q9UI25 63 aa3.47□□□□□ -1.85
CD44-204ENST00000279452 RNF213Q63HN8 5207 aa3.47□□□□□ -1.85
CD44-204ENST00000279452 A8MUU9 505 aa3.46□□□□□ -1.86
CD44-204ENST00000279452 A8MWP4 228 aa3.46□□□□□ -1.86
CD44-204ENST00000279452 F8W1H4 67 aa3.45□□□□□ -1.86
CD44-204ENST00000279452 BPY2O14599 106 aa3.45□□□□□ -1.86
CD44-204ENST00000279452 COX6B2Q6YFQ2 88 aa3.45□□□□□ -1.86
CD44-204ENST00000279452 C8orf17Q9NRJ1 99 aa3.45□□□□□ -1.86
CD44-204ENST00000279452 MUC17Q685J3 4493 aa3.45□□□□□ -1.86
CD44-204ENST00000279452 IGKV3D-7A0A0C4DH55 119 aa3.44□□□□□ -1.86
CD44-204ENST00000279452 KRTAP16-1A8MUX0 517 aa3.44□□□□□ -1.86
CD44-204ENST00000279452 LCE4AQ5TA78 99 aa3.44□□□□□ -1.86
CD44-204ENST00000279452 Q6ZVQ6 151 aa3.44□□□□□ -1.86
CD44-204ENST00000279452 UBL5Q9BZL1 73 aa3.44□□□□□ -1.86
CD44-204ENST00000279452 A0A1B0GV90 55 aa3.43□□□□□ -1.86
CD44-204ENST00000279452 K7EQZ3 153 aa3.43□□□□□ -1.86
CD44-204ENST00000279452 ETDBQ3ZM63 59 aa3.43□□□□□ -1.86
CD44-204ENST00000279452 PRR15Q8IV56 129 aa3.43□□□□□ -1.86
CD44-204ENST00000279452 V9GYY9 64 aa3.43□□□□□ -1.86
CD44-204ENST00000279452 MUC2Q02817 5179 aa3.42□□□□□ -1.86
CD44-204ENST00000279452 NDUFS5O43920 106 aa3.42□□□□□ -1.86
CD44-204ENST00000279452 Q8N9L7 120 aa3.42□□□□□ -1.86
CD44-204ENST00000279452 LINC00846Q9NV44 126 aa3.42□□□□□ -1.86
CD44-204ENST00000279452 KRTAP4-9Q9BYQ8 210 aa3.41□□□□□ -1.86
CD44-204ENST00000279452 MMP24-AS1A0A0U1RRL7 71 aa3.4□□□□□ -1.87
CD44-204ENST00000279452 hDV103S1A0JD37 113 aa3.4□□□□□ -1.87
CD44-204ENST00000279452 WFDC13Q8IUB5 93 aa3.4□□□□□ -1.87
CD44-204ENST00000279452 MRPL34Q9BQ48 92 aaKnown RBP3.4□□□□□ -1.87
CD44-204ENST00000279452 FAM236DA0A1B0GTK5 79 aa3.39□□□□□ -1.87
CD44-204ENST00000279452 FAM236CP0DP71 79 aa3.39□□□□□ -1.87
CD44-204ENST00000279452 TMEM254Q8TBM7 123 aa3.39□□□□□ -1.87
CD44-204ENST00000279452 ZCCHC13Q8WW36 166 aaKnown RBP3.39□□□□□ -1.87
CD44-204ENST00000279452 M0R2T5 61 aa3.38□□□□□ -1.87
CD44-204ENST00000279452 CASC2Q6XLA1 102 aa3.38□□□□□ -1.87
CD44-204ENST00000279452 Q8N9P0 234 aaPredicted RBP3.38□□□□□ -1.87
CD44-204ENST00000279452 K7ERU9 68 aa3.37□□□□□ -1.87
CD44-204ENST00000279452 HCG22E2RYF7 251 aa3.36□□□□□ -1.87
CD44-204ENST00000279452 KRTAP19-2Q3LHN2 52 aa3.36□□□□□ -1.87
CD44-204ENST00000279452 RBM12B-AS1Q9P1G2 102 aa3.36□□□□□ -1.87
CD44-204ENST00000279452 ACYP1P07311 99 aa3.35□□□□□ -1.87
CD44-204ENST00000279452 SPINK7P58062 85 aa3.35□□□□□ -1.87
CD44-204ENST00000279452 MT1HP80294 61 aa3.35□□□□□ -1.87
CD44-204ENST00000279452 CXCL6P80162 114 aa3.34□□□□□ -1.87
CD44-204ENST00000279452 KRTAP4-2Q9BYR5 136 aa3.34□□□□□ -1.87
CD44-204ENST00000279452 IGKV2D-30A0A075B6S6 120 aa3.33□□□□□ -1.88
CD44-204ENST00000279452 KRTAP9-7A8MTY7 169 aa3.33□□□□□ -1.88
CD44-204ENST00000279452 IGKV2-30P06310 120 aa3.33□□□□□ -1.88
CD44-204ENST00000279452 FAT4Q6V0I7 4981 aa3.32□□□□□ -1.88
CD44-204ENST00000279452 FAM240AA0A1B0GVK7 77 aa3.32□□□□□ -1.88
CD44-204ENST00000279452 HRES1P13985 223 aa3.32□□□□□ -1.88
CD44-204ENST00000279452 HIST1H4AP62805 103 aaKnown RBP3.32□□□□□ -1.88
CD44-204ENST00000279452 ATP5EP2Q5VTU8 51 aa3.31□□□□□ -1.88
CD44-204ENST00000279452 H3BS24 57 aa3.3□□□□□ -1.88
CD44-204ENST00000279452 J3QR89 54 aa3.3□□□□□ -1.88
CD44-204ENST00000279452 Q5W150 140 aa3.29□□□□□ -1.88
CD44-204ENST00000279452 C7orf65Q6ZTY9 151 aa3.29□□□□□ -1.88
CD44-204ENST00000279452 SMIM20Q8N5G0 67 aa3.29□□□□□ -1.88
CD44-204ENST00000279452 KRTAP4-11Q9BYQ6 195 aa3.29□□□□□ -1.88
CD44-204ENST00000279452 KRTAP10-6P60371 365 aaPredicted RBP3.27□□□□□ -1.89
CD44-204ENST00000279452 KRTAP19-4Q3LI73 84 aa3.27□□□□□ -1.89
CD44-204ENST00000279452 LINC00643Q86TS7 51 aa3.27□□□□□ -1.89
CD44-204ENST00000279452 MPLKIPQ8TAP9 179 aa3.27□□□□□ -1.89
CD44-204ENST00000279452 TP53AIP1Q9HCN2 124 aa3.27□□□□□ -1.89
CD44-204ENST00000279452 PRO0628Q9UI54 55 aa3.27□□□□□ -1.89
CD44-204ENST00000279452 A0A087WVE0 104 aa3.26□□□□□ -1.89
CD44-204ENST00000279452 TRAV22A0A0B4J277 110 aa3.23□□□□□ -1.89
CD44-204ENST00000279452 C4orf26Q17RF5 130 aa3.23□□□□□ -1.89
CD44-204ENST00000279452 RPS28P62857 69 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms