RNA–Protein interactions for RNA: ENST00000249014.4

CDC42EP1-201, Transcript of CDC42 effector protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CDC42EP1, Length 2,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP1-201ENST00000249014 TP53AIP1Q9HCN2 124 aa11.48□□□□□ -0.57
CDC42EP1-201ENST00000249014 HYDINQ4G0P3 5121 aa11.46□□□□□ -0.57
CDC42EP1-201ENST00000249014 PRO0628Q9UI54 55 aa11.46□□□□□ -0.57
CDC42EP1-201ENST00000249014 KRTAP10-1P60331 282 aa11.45□□□□□ -0.58
CDC42EP1-201ENST00000249014 SPINK6Q6UWN8 80 aa11.45□□□□□ -0.58
CDC42EP1-201ENST00000249014 MRPL34Q9BQ48 92 aaKnown RBP11.45□□□□□ -0.58
CDC42EP1-201ENST00000249014 NDUFS5O43920 106 aa11.44□□□□□ -0.58
CDC42EP1-201ENST00000249014 Q6ZSA8 131 aa11.44□□□□□ -0.58
CDC42EP1-201ENST00000249014 FAT2Q9NYQ8 4349 aa11.43□□□□□ -0.58
CDC42EP1-201ENST00000249014 CD164Q04900 197 aa11.42□□□□□ -0.58
CDC42EP1-201ENST00000249014 SSBP3-AS1Q7Z2R9 100 aa11.42□□□□□ -0.58
CDC42EP1-201ENST00000249014 LRP1BQ9NZR2 4599 aa11.41□□□□□ -0.58
CDC42EP1-201ENST00000249014 Q1T7F1 81 aa11.38□□□□□ -0.59
CDC42EP1-201ENST00000249014 PCOTHQ58A44 107 aa11.38□□□□□ -0.59
CDC42EP1-201ENST00000249014 KRTAP13-2Q52LG2 175 aa11.37□□□□□ -0.59
CDC42EP1-201ENST00000249014 IGLV7-46A0A075B6I9 117 aa11.35□□□□□ -0.59
CDC42EP1-201ENST00000249014 Q5W150 140 aa11.29□□□□□ -0.6
CDC42EP1-201ENST00000249014 KRTAP1-4P0C5Y4 121 aa11.27□□□□□ -0.6
CDC42EP1-201ENST00000249014 BRK1Q8WUW1 75 aa11.27□□□□□ -0.6
CDC42EP1-201ENST00000249014 VPS13BQ7Z7G8 4022 aa11.26□□□□□ -0.61
CDC42EP1-201ENST00000249014 KRTAP13-3Q3SY46 172 aa11.26□□□□□ -0.61
CDC42EP1-201ENST00000249014 PSPHP1O15172 72 aa11.26□□□□□ -0.61
CDC42EP1-201ENST00000249014 COA5Q86WW8 74 aa11.25□□□□□ -0.61
CDC42EP1-201ENST00000249014 C8orf87E5RJ46 101 aa11.24□□□□□ -0.61
CDC42EP1-201ENST00000249014 C1orf195Q5TG92 126 aa11.24□□□□□ -0.61
CDC42EP1-201ENST00000249014 Q8N9P0 234 aaPredicted RBP11.23□□□□□ -0.61
CDC42EP1-201ENST00000249014 LINC00313P59037 77 aa11.2□□□□□ -0.62
CDC42EP1-201ENST00000249014 LOC101927531A0A1B0GV80 90 aa11.18□□□□□ -0.62
CDC42EP1-201ENST00000249014 V9GYY9 64 aa11.18□□□□□ -0.62
CDC42EP1-201ENST00000249014 A8MUN3 132 aa11.18□□□□□ -0.62
CDC42EP1-201ENST00000249014 SACSQ9NZJ4 4579 aa11.16□□□□□ -0.62
CDC42EP1-201ENST00000249014 PKHD1P08F94 4074 aa11.16□□□□□ -0.62
CDC42EP1-201ENST00000249014 PLA2G1BP04054 148 aaKnown RBP11.13□□□□□ -0.63
CDC42EP1-201ENST00000249014 HRES1P13985 223 aa11.12□□□□□ -0.63
CDC42EP1-201ENST00000249014 Q5VV11 94 aa11.11□□□□□ -0.63
CDC42EP1-201ENST00000249014 LIMD2Q9BT23 127 aa11.11□□□□□ -0.63
CDC42EP1-201ENST00000249014 KRTAP16-1A8MUX0 517 aa11.1□□□□□ -0.63
CDC42EP1-201ENST00000249014 RETNLBQ9BQ08 111 aa11.09□□□□□ -0.63
CDC42EP1-201ENST00000249014 TYMSOSQ8TAI1 123 aa11.08□□□□□ -0.64
CDC42EP1-201ENST00000249014 FAM229AH3BQW9 127 aa11.06□□□□□ -0.64
CDC42EP1-201ENST00000249014 PRR15LQ9BU68 103 aa11.05□□□□□ -0.64
CDC42EP1-201ENST00000249014 C4orf48Q5BLP8 95 aa11.04□□□□□ -0.64
CDC42EP1-201ENST00000249014 SPINK1P00995 79 aa11.01□□□□□ -0.65
CDC42EP1-201ENST00000249014 SPAG11AQ6PDA7 123 aa11.01□□□□□ -0.65
CDC42EP1-201ENST00000249014 PRR26Q8N8Z3 221 aa10.99□□□□□ -0.65
CDC42EP1-201ENST00000249014 IGKV2-30P06310 120 aa10.99□□□□□ -0.65
CDC42EP1-201ENST00000249014 CHKB-CPT1BH3BT56 60 aa10.98□□□□□ -0.65
CDC42EP1-201ENST00000249014 SMR3BP02814 79 aaPredicted RBP10.97□□□□□ -0.65
CDC42EP1-201ENST00000249014 DYNC1H1Q14204 4646 aaKnown RBP10.97□□□□□ -0.65
CDC42EP1-201ENST00000249014 LINC01558Q9Y6Z2 57 aa10.96□□□□□ -0.66
CDC42EP1-201ENST00000249014 A8MU10 97 aa10.95□□□□□ -0.66
CDC42EP1-201ENST00000249014 Q75L30 129 aa10.94□□□□□ -0.66
CDC42EP1-201ENST00000249014 ACYP2P14621 99 aa10.93□□□□□ -0.66
CDC42EP1-201ENST00000249014 LINC00304Q8N9R0 145 aa10.93□□□□□ -0.66
CDC42EP1-201ENST00000249014 DMAC1Q96GE9 116 aa10.93□□□□□ -0.66
CDC42EP1-201ENST00000249014 A0A1B0GVY2 172 aa10.92□□□□□ -0.66
CDC42EP1-201ENST00000249014 RPS29P62273 56 aaKnown RBP10.87□□□□□ -0.67
CDC42EP1-201ENST00000249014 IGKV2D-30A0A075B6S6 120 aa10.86□□□□□ -0.67
CDC42EP1-201ENST00000249014 SEC61GP60059 68 aa10.86□□□□□ -0.67
CDC42EP1-201ENST00000249014 FAT1Q14517 4588 aa10.86□□□□□ -0.67
CDC42EP1-201ENST00000249014 APOBP04114 4563 aaKnown RBP10.85□□□□□ -0.67
CDC42EP1-201ENST00000249014 KRTAP10-4P60372 401 aaPredicted RBP10.85□□□□□ -0.67
CDC42EP1-201ENST00000249014 A6NED7 52 aa10.83□□□□□ -0.68
CDC42EP1-201ENST00000249014 LCA10Q71F78 164 aa10.82□□□□□ -0.68
CDC42EP1-201ENST00000249014 RYR2Q92736 4967 aa10.81□□□□□ -0.68
CDC42EP1-201ENST00000249014 PMAIP1Q13794 54 aa10.77□□□□□ -0.68
CDC42EP1-201ENST00000249014 PKHD1L1Q86WI1 4243 aa10.76□□□□□ -0.69
CDC42EP1-201ENST00000249014 KMT2CQ8NEZ4 4911 aaKnown RBP10.76□□□□□ -0.69
CDC42EP1-201ENST00000249014 SPINK7P58062 85 aa10.74□□□□□ -0.69
CDC42EP1-201ENST00000249014 CDC42SE1Q9NRR8 79 aa10.71□□□□□ -0.69
CDC42EP1-201ENST00000249014 C9orf92A6NGG3 77 aa10.7□□□□□ -0.7
CDC42EP1-201ENST00000249014 C7orf65Q6ZTY9 151 aa10.7□□□□□ -0.7
CDC42EP1-201ENST00000249014 SPTSSBQ8NFR3 76 aa10.66□□□□□ -0.7
CDC42EP1-201ENST00000249014 ATP11AUNQ6ZP68 121 aa10.63□□□□□ -0.71
CDC42EP1-201ENST00000249014 C20orf166-AS1Q96NR2 134 aa10.63□□□□□ -0.71
CDC42EP1-201ENST00000249014 A8MUU9 505 aa10.62□□□□□ -0.71
CDC42EP1-201ENST00000249014 Q8N1X5 172 aa10.6□□□□□ -0.71
CDC42EP1-201ENST00000249014 A0A1B0GU69 56 aa10.59□□□□□ -0.71
CDC42EP1-201ENST00000249014 FLG2Q5D862 2391 aaPredicted RBP10.54□□□□□ -0.72
CDC42EP1-201ENST00000249014 A6NN06 94 aa10.49□□□□□ -0.73
CDC42EP1-201ENST00000249014 LRP1Q07954 4544 aaKnown RBP10.48□□□□□ -0.73
CDC42EP1-201ENST00000249014 RYR3Q15413 4870 aa10.46□□□□□ -0.73
CDC42EP1-201ENST00000249014 TNXBP22105 4242 aa10.44□□□□□ -0.74
CDC42EP1-201ENST00000249014 KTN1-AS1Q86SY8 53 aa10.44□□□□□ -0.74
CDC42EP1-201ENST00000249014 KRTAP3-1Q9BYR8 98 aa10.43□□□□□ -0.74
CDC42EP1-201ENST00000249014 HSPG2P98160 4391 aa10.42□□□□□ -0.74
CDC42EP1-201ENST00000249014 FAT3Q8TDW7 4589 aa10.42□□□□□ -0.74
CDC42EP1-201ENST00000249014 KRTAP10-8P60410 259 aa10.41□□□□□ -0.74
CDC42EP1-201ENST00000249014 Q5VSD8 79 aa10.4□□□□□ -0.74
CDC42EP1-201ENST00000249014 SPATA8Q6RVD6 105 aa10.38□□□□□ -0.75
CDC42EP1-201ENST00000249014 UQCR11O14957 56 aa10.36□□□□□ -0.75
CDC42EP1-201ENST00000249014 MIR22HGQ0VDD5 57 aa10.33□□□□□ -0.76
CDC42EP1-201ENST00000249014 KRTAP17-1Q9BYP8 105 aa10.33□□□□□ -0.76
CDC42EP1-201ENST00000249014 RBM12B-AS1Q9P1G2 102 aa10.3□□□□□ -0.76
CDC42EP1-201ENST00000249014 RYR1P21817 5038 aa10.28□□□□□ -0.76
CDC42EP1-201ENST00000249014 COX6B2Q6YFQ2 88 aa10.24□□□□□ -0.77
CDC42EP1-201ENST00000249014 DMBT1Q9UGM3 2413 aaPredicted RBP10.23□□□□□ -0.77
CDC42EP1-201ENST00000249014 RPL37P61927 97 aaKnown RBP10.18□□□□□ -0.78
CDC42EP1-201ENST00000249014 KIAA1109Q2LD37 5005 aa10.17□□□□□ -0.78
CDC42EP1-201ENST00000249014 XP32Q5T750 250 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms