RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 ASH1LQ9NR48 2969 aaKnown RBP6.81□□□□□ -1.32
VAMP4-201ENST00000236192 MYO15AQ9UKN7 3530 aa6.8□□□□□ -1.32
VAMP4-201ENST00000236192 SETXQ7Z333 2677 aaKnown RBP6.79□□□□□ -1.32
VAMP4-201ENST00000236192 SPTBN5Q9NRC6 3674 aaKnown RBP6.78□□□□□ -1.32
VAMP4-201ENST00000236192 DMXL1Q9Y485 3027 aa6.77□□□□□ -1.33
VAMP4-201ENST00000236192 WDFY3Q8IZQ1 3526 aa6.77□□□□□ -1.33
VAMP4-201ENST00000236192 USP24Q9UPU5 2620 aa6.76□□□□□ -1.33
VAMP4-201ENST00000236192 M0R2T5 61 aa6.76□□□□□ -1.33
VAMP4-201ENST00000236192 KRTAP10-1P60331 282 aa6.75□□□□□ -1.33
VAMP4-201ENST00000236192 KRTAP10-2P60368 255 aa6.74□□□□□ -1.33
VAMP4-201ENST00000236192 HRNRQ86YZ3 2850 aaPredicted RBP6.73□□□□□ -1.33
VAMP4-201ENST00000236192 CSMD1Q96PZ7 3565 aa6.72□□□□□ -1.33
VAMP4-201ENST00000236192 STAB2Q8WWQ8 2551 aa6.71□□□□□ -1.33
VAMP4-201ENST00000236192 UBR5O95071 2799 aaPredicted RBP6.7□□□□□ -1.34
VAMP4-201ENST00000236192 KRTAP10-8P60410 259 aa6.7□□□□□ -1.34
VAMP4-201ENST00000236192 ZNF292O60281 2723 aa6.67□□□□□ -1.34
VAMP4-201ENST00000236192 KRTAP12-2P59991 146 aa6.67□□□□□ -1.34
VAMP4-201ENST00000236192 ZFHX4Q86UP3 3567 aa6.66□□□□□ -1.34
VAMP4-201ENST00000236192 NOTCH1P46531 2555 aa6.66□□□□□ -1.34
VAMP4-201ENST00000236192 ATMQ13315 3056 aa6.62□□□□□ -1.35
VAMP4-201ENST00000236192 CFAP46Q8IYW2 2715 aa6.6□□□□□ -1.35
VAMP4-201ENST00000236192 KRTAP1-4P0C5Y4 121 aa6.59□□□□□ -1.35
VAMP4-201ENST00000236192 COL6A5A8TX70 2615 aa6.58□□□□□ -1.36
VAMP4-201ENST00000236192 TNP1P09430 55 aa6.58□□□□□ -1.36
VAMP4-201ENST00000236192 LOC400499M0QZD8 3231 aa6.57□□□□□ -1.36
VAMP4-201ENST00000236192 SMG1Q96Q15 3661 aaKnown RBP6.56□□□□□ -1.36
VAMP4-201ENST00000236192 KRTAP3-1Q9BYR8 98 aa6.56□□□□□ -1.36
VAMP4-201ENST00000236192 KRTAP12-1P59990 96 aa6.55□□□□□ -1.36
VAMP4-201ENST00000236192 MAST4O15021 2626 aa6.54□□□□□ -1.36
VAMP4-201ENST00000236192 COL12A1Q99715 3063 aa6.54□□□□□ -1.36
VAMP4-201ENST00000236192 STAB1Q9NY15 2570 aa6.54□□□□□ -1.36
VAMP4-201ENST00000236192 FLNBO75369 2602 aaKnown RBP6.54□□□□□ -1.36
VAMP4-201ENST00000236192 MGAM2Q2M2H8 2515 aa6.52□□□□□ -1.37
VAMP4-201ENST00000236192 TEP1Q99973 2627 aaKnown RBP6.52□□□□□ -1.37
VAMP4-201ENST00000236192 KRTAP13-4Q3LI77 160 aa6.51□□□□□ -1.37
VAMP4-201ENST00000236192 XP32Q5T750 250 aa6.5□□□□□ -1.37
VAMP4-201ENST00000236192 KRTAP10-6P60371 365 aaPredicted RBP6.47□□□□□ -1.37
VAMP4-201ENST00000236192 TGP01266 2768 aa6.47□□□□□ -1.37
VAMP4-201ENST00000236192 DMDP11532 3685 aa6.46□□□□□ -1.37
VAMP4-201ENST00000236192 HIVEP1P15822 2718 aa6.45□□□□□ -1.38
VAMP4-201ENST00000236192 ZANQ9Y493 2812 aa6.43□□□□□ -1.38
VAMP4-201ENST00000236192 FBN2P35556 2912 aa6.43□□□□□ -1.38
VAMP4-201ENST00000236192 DCHS2Q6V1P9 2916 aa6.41□□□□□ -1.38
VAMP4-201ENST00000236192 NSD1Q96L73 2696 aaPredicted RBP6.4□□□□□ -1.38
VAMP4-201ENST00000236192 PRO2289Q9P1D8 64 aa6.38□□□□□ -1.39
VAMP4-201ENST00000236192 SPENQ96T58 3664 aaKnown RBP6.38□□□□□ -1.39
VAMP4-201ENST00000236192 HECTD1Q9ULT8 2610 aa6.38□□□□□ -1.39
VAMP4-201ENST00000236192 NF1P21359 2839 aa6.37□□□□□ -1.39
VAMP4-201ENST00000236192 ASPMQ8IZT6 3477 aa6.36□□□□□ -1.39
VAMP4-201ENST00000236192 KMT2BQ9UMN6 2715 aaPredicted RBP6.35□□□□□ -1.39
VAMP4-201ENST00000236192 CELSR2Q9HCU4 2923 aa6.35□□□□□ -1.39
VAMP4-201ENST00000236192 INE1O15225 51 aa6.35□□□□□ -1.39
VAMP4-201ENST00000236192 NIPBLQ6KC79 2804 aaeCLIP6.35□□□□□ -1.39
VAMP4-201ENST00000236192 EYSQ5T1H1 3165 aa6.33□□□□□ -1.4
VAMP4-201ENST00000236192 MXRA5Q9NR99 2828 aa6.32□□□□□ -1.4
VAMP4-201ENST00000236192 SVEP1Q4LDE5 3571 aa6.31□□□□□ -1.4
VAMP4-201ENST00000236192 ALMS1Q8TCU4 4167 aa6.3□□□□□ -1.4
VAMP4-201ENST00000236192 FLNCQ14315 2725 aa6.3□□□□□ -1.4
VAMP4-201ENST00000236192 Q5VSD8 79 aa6.29□□□□□ -1.4
VAMP4-201ENST00000236192 IGSF10Q6WRI0 2623 aa6.28□□□□□ -1.4
VAMP4-201ENST00000236192 LAMA5O15230 3695 aa6.27□□□□□ -1.41
VAMP4-201ENST00000236192 KRTAP3-2Q9BYR7 98 aa6.26□□□□□ -1.41
VAMP4-201ENST00000236192 CELSR1Q9NYQ6 3014 aa6.21□□□□□ -1.42
VAMP4-201ENST00000236192 ITPR2Q14571 2701 aa6.2□□□□□ -1.42
VAMP4-201ENST00000236192 RELNP78509 3460 aa6.19□□□□□ -1.42
VAMP4-201ENST00000236192 CRYBG3Q68DQ2 2970 aa6.16□□□□□ -1.42
VAMP4-201ENST00000236192 KRTAP3-3Q9BYR6 98 aa6.16□□□□□ -1.42
VAMP4-201ENST00000236192 TENM3Q9P273 2699 aa6.13□□□□□ -1.43
VAMP4-201ENST00000236192 TENM2Q9NT68 2774 aa6.12□□□□□ -1.43
VAMP4-201ENST00000236192 SRRM2Q9UQ35 2752 aaKnown RBP6.1□□□□□ -1.43
VAMP4-201ENST00000236192 PDZD2O15018 2839 aa6.03□□□□□ -1.44
VAMP4-201ENST00000236192 CUBNO60494 3623 aa5.97□□□□□ -1.45
VAMP4-201ENST00000236192 VPS13CQ709C8 3753 aa5.89□□□□□ -1.47
VAMP4-201ENST00000236192 BSNQ9UPA5 3926 aa5.89□□□□□ -1.47
VAMP4-201ENST00000236192 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
VAMP4-201ENST00000236192 PKD1L1Q8TDX9 2849 aa5.86□□□□□ -1.47
VAMP4-201ENST00000236192 MUC3AQ02505 3323 aa5.86□□□□□ -1.47
VAMP4-201ENST00000236192 VWFP04275 2813 aa5.84□□□□□ -1.47
VAMP4-201ENST00000236192 ANK3Q12955 4377 aaKnown RBP5.82□□□□□ -1.48
VAMP4-201ENST00000236192 NBPF19A0A087WUL8 3843 aa5.81□□□□□ -1.48
VAMP4-201ENST00000236192 TENM4Q6N022 2769 aa5.78□□□□□ -1.48
VAMP4-201ENST00000236192 CSMD2Q7Z408 3487 aa5.77□□□□□ -1.49
VAMP4-201ENST00000236192 A0A1B0GVY2 172 aa5.77□□□□□ -1.49
VAMP4-201ENST00000236192 TENM1Q9UKZ4 2725 aa5.77□□□□□ -1.49
VAMP4-201ENST00000236192 AKAP9Q99996 3911 aa5.73□□□□□ -1.49
VAMP4-201ENST00000236192 COL7A1Q02388 2944 aa5.72□□□□□ -1.49
VAMP4-201ENST00000236192 FBN1P35555 2871 aaKnown RBP5.71□□□□□ -1.5
VAMP4-201ENST00000236192 MEGF8Q7Z7M0 2845 aa5.69□□□□□ -1.5
VAMP4-201ENST00000236192 FBN3Q75N90 2809 aa5.68□□□□□ -1.5
VAMP4-201ENST00000236192 KRTAP21-3Q3LHN1 58 aa5.65□□□□□ -1.51
VAMP4-201ENST00000236192 OTOGQ6ZRI0 2925 aa5.6□□□□□ -1.51
VAMP4-201ENST00000236192 HUWE1Q7Z6Z7 4374 aaKnown RBP5.6□□□□□ -1.51
VAMP4-201ENST00000236192 TRRAPQ9Y4A5 3859 aa5.58□□□□□ -1.52
VAMP4-201ENST00000236192 KRTAP10-10P60014 251 aa5.54□□□□□ -1.52
VAMP4-201ENST00000236192 LORP23490 312 aaPredicted RBP5.51□□□□□ -1.53
VAMP4-201ENST00000236192 CSMD3Q7Z407 3707 aa5.5□□□□□ -1.53
VAMP4-201ENST00000236192 DNAH10Q8IVF4 4471 aa5.48□□□□□ -1.53
VAMP4-201ENST00000236192 DNAH8Q96JB1 4490 aa5.48□□□□□ -1.53
VAMP4-201ENST00000236192 LCE3AQ5TA76 89 aa5.46□□□□□ -1.54
VAMP4-201ENST00000236192 DNAH11Q96DT5 4516 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms